Typing tool
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Typing tool
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Complete norovirus genomes
| MW661262 | GII.3 | |
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| GII.P21 |
ORF1: 1..5100
ORF2: 5081..6727
ORF3: 6727..7491
LOCUS MW661262 7578 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH19-095 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MW661262
VERSION MW661262.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7578)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7578)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7578
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH19-095"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: British Columbia"
/collection_date="2019"
/note="Viral RNA extracted from fecal samples;
genotype: GII.3_GII.P21(GII.Pb)"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58405.1"
/translation="MKMASNDASAAAAAKSNNDNEKSSSDGVLSNMAVTFKRALGARP
KQPPPSDKPPKPPRPPTPELVKAIPPPPPNGEDEPIISYNVKGGVSGLPELSTVTQLE
ENSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLNRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVVLCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEKNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLAAYMRTLDMEEEKARKLST
KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKKIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSSPVHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPTPTTFNFDRNKVIAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNISVKKCQLVYGGGTYTLESDGKGNVHVEKVNNTSVQTNNELSGVLHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRTNIQNLWSKPQVEDLEETNNEEGC
PKPKNDEEFVVSSGDIKSEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEAMLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNVTPVYTGALKDELVKTDKIYGVVKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFRISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQIFWTKGP
NHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..990
/gene="ORF1"
/product="p48"
mat_peptide 991..2088
/gene="ORF1"
/product="NTPase"
mat_peptide 2089..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6727
/gene="ORF2"
CDS 5081..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58406.1"
/translation="MKMASSDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDTTTRAHEAKVDTTSGRFTPKLGSLEISTESSDFDQSQP
TRFTPVGIGVDHEADFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6727..7491
/gene="ORF3"
CDS 6727..7491
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58407.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNTGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRPTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ccaaaagcaa caacgacaac
61 gaaaaatctt caagtgacgg agtattatct aatatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc gcccccgagt gacaaaccac caaaaccccc gagaccaccc
181 acaccagagt tggttaaggc aattccccct cccccaccca acggggagga cgaaccaatc
241 atctcttaca acgttaaagg gggtgtttct ggtttgcctg agctctcaac tgtcacccaa
301 ctggaagaga actctacagc attcagcgtt ccccctctta gtcagaggga gaacagagat
361 gcaaaggaac cattgactgg aaccatcctg gagatgtggg acggggagat ttaccactat
421 ggcttatacg tagaacgagg gttagtgctt ggtgtacaca aaccaccagc agccatcagc
481 cttgctaagg ttgagctgac ccctttgtct ttgtattgga gaccagtgta caccccacag
541 tacctcatct cccctgacac tctcagaaag ttgcatgggg agacgttccc ttatacagcc
601 tttgacaaca actgttatgc cttctgctgt tgggtgcttg acctgaatga ttcatggctg
661 aacagaagga tgatacagag gacaacaggc ttcttccggc cctaccagga ttggaacagg
721 aaacccctcc ccacgatgga tgactccaaa gtgaaaaagg tggccaatgt tgtcctatgt
781 gctctctcat cattgttcac aagaccaatt aaggacatta ttgggaagtt aaaaccccta
841 aacattctca acatcttagc cacatgtgat tggacttttg caggcatagt agaatccctg
901 atccttttgg ctgaactttt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
961 gctcccttac taggtgatta tgaactacag ggacccgagg acctcgctgt ggaactcgta
1021 cccgtagtaa tgggagggat aggtttggtg ctgggattca ccaaagagaa aatcggcaag
1081 atgctttctt ccgctgcttc aaccctgaga gcatgtaaag atctcggtgc atatgggttg
1141 gagatcctca aattggttat gaaatggttt ttcccaaaga aagaagagaa aaacgaattg
1201 gcaatggtga gatccatcga ggatgcggtg ctagatcttg aagccattga gaacaaccat
1261 atgacagctc tactcaagga taaagacagc cttgcagcct acatgaggac tcttgacatg
1321 gaagaggaga aggcgagaaa actttctacc aagtctgcct ctccggatat tgtgggcacg
1381 ataaatgccc tactgtcaag gattgcagct gcccggtctc tagtgcacag ggctaaggag
1441 gagctgtcaa gcaggccccg accggtcgtt gtaatgattt cagggaaacc gggtatagga
1501 aaaacccatc tagctagaga gttggcaaag aagatcgcct ccacacttac gggtgaccag
1561 agggtgggtc ttatcccacg taacggggtc gaccactggg atgcatacaa aggtgaaaga
1621 gttgttctat gggacgacta cgggatgagc agccctgtcc acgacgccct cagactccag
1681 gagctcgctg atacctgtcc tctcacactc aactgtgaca ggattgagaa caaaggtaaa
1741 gtctttgaca gtgacgtcat aataataacc accaatttag ccaacccagc accactggat
1801 tatgtcaact ttgaagcttg ctcgagacgc atagacttcc tcgtctatgc tgatgctcct
1861 gaagttgaga aggctaagcg ggacttccca ggccaaccag acatgtggaa agataccttc
1921 aaacccgact tctcacatat aaaattggca ttggccccgc aaggaggttt tgacaagaat
1981 ggcaacactc ctcatgggaa gggagtcatg aagaccctca ctgccagctc cctcgttgcc
2041 cgagcatcag ggctcctcca cgagagatta gacgagtatg agctgcaggg tccaactccc
2101 acaacattca acttcgaccg caacaaggtg attgctttta ggcagcttgc tgctgaaaac
2161 aagtacggtc ttgttgacac aatgagggtc gggtcacaac tcaagaatgt caaaactatg
2221 acagagctca agcaggccct caagaacatc tcagttaaga aatgtcagct cgtgtacggc
2281 gggggcacat acacacttga atctgatggc aaaggcaatg tgcatgtcga aaaggtaaac
2341 aacaccagtg tacaaactaa caacgagctc tccggggttt tgcaccatct caggtgtgct
2401 agaatcaggt actatgttaa gtgtgttcaa gaagctctct actccatcct acaaattgcc
2461 ggggctgcat tcataaccac gcgcattgca aagcgcacaa acatacaaaa cctctggtct
2521 aaaccacaag tagaagatct agaggagact aacaacgagg agggttgtcc aaagcctaaa
2581 aatgatgaag aatttgtcgt ctcctctggt gacatcaaat ctgagggtaa gaaaggaaag
2641 aacaagactg gccgtggtaa gaagcacaca gccttttcca gcaaaggact cagtgatgag
2701 gaatacgatg agtataagag aatcagggaa gagagaaatg gtaagtactc catagaggaa
2761 tacctacagg acagagacaa atactatgag gaggtggcca tagccagggc aactgaggaa
2821 gatttctgtg aagaagagga ggccaagatc cggcagagga tattcagacc aacaaggaaa
2881 caacgcaaag aggaaagagc ttctcttggt ttggtcacag gctctgagat caggaagaga
2941 aacccagatg acttcaagcc caaagggaaa ctatgggctg atgatgacag gagtgttgac
3001 tacaatgaga aactcagttt cgaggcccca ccaagcattt ggtcacgaat agtcaacttt
3061 ggatcagggt ggggcttttg ggtctcgccc agcctcttca taacatcaac ccatgtcatt
3121 ccccaaggcg cgcaggagtt ctttggagtg tccatcaaac aaatacaaat tcacaagtca
3181 ggtgagttct gccggcttag gttcccaaaa ccaatcagga cagatgttac aggcatgatc
3241 ttggaggaag gtgctccaga aggcactgtt gccacacttc tcatcaagag accaactggg
3301 gaactcatgc ccttggcagc caggatgggc acccacgcta ccatgaaaat tcagggtcgc
3361 actgttggtg gacagatggg catgctactc acagggtcta acgctaagag catggatttg
3421 ggcacaactc ctggcgattg tggttgtccc tatatctaca agagggggaa cgactacgtg
3481 gtcattggag ttcacactgc cgccgctcgt ggaggaaaca ccgtcatctg cgcaacccaa
3541 ggaaacgagg gtgaggccat gctagaaggt ggtgacaaca agggaactta ttgcggggca
3601 ccaatattag gccctggaaa tgcccccaaa ctcagtacca aaaccaaatt ttggaggtct
3661 tccaccaccc ccctgccacc cggaacctat gagccagctt atctgggtgg caaggaccct
3721 agagtgaaag gtggtccctc actgcaacag gttatgagag accaactaaa accattcact
3781 gagcccagag gcaaaccacc caaaccaagt gtgctagaag ctgccaagaa gactataatc
3841 aatgtgcttg aacaaacaat agacccacct caaaagtgga catacgcaca agcgtgtgca
3901 tcactagaca agaccacttc cagcggtcac cctcaccaca tgcggaaaaa cgattgctgg
3961 aatggggaat ctttcacagg aaaactggca gaccaagcat caaaggccaa tctaatgttt
4021 gaggaaggaa agaacgtgac tccagtgtac acaggagctc tgaaagatga gctagtcaaa
4081 actgacaaga tctatggggt agtcaagaag aggctcctgt ggggttcaga cctatcaacc
4141 atgatacggt gtgcacgagc ctttggtggg ctaatggacg agctcaaggc ccattgtgtc
4201 acactaccag tcagggttgg tatgaacatg aatgaggatg gacccataat atttgagaaa
4261 cactccagat acaaatacca ttatgatgca gattactccc gctgggactc aacacaacaa
4321 agagcagtgc tagccgcagc cctggaaata atggtcaaat tctcaccaga accccacctg
4381 gcccaggtgg ttgcagaaga ccttttgtcc cccagtgtga tggacgtggg tgatttcagg
4441 atatcaatca acgagggatt accctctggc gttccttgca cttcacaatg gaattccatt
4501 gcccactggc tcctcacact atgtgcactg tctgaagtca caaacctgtc ccctgacatc
4561 atccaggcga actccctgtt ttccttttat ggtgatgatg aaatagtgag cacagacatc
4621 aaattagacc cagagaaatt gacagcaaag ctgagggaat acgggcttaa accaactcgc
4681 cctgacaaaa cagagggacc cttaattatc tctgaagatt tgaatggcct gaccttcttg
4741 cggagaacag tgacccgcga cccggccgga tggtttggca aactggacca aagttcaata
4801 ctcaggcaga tattctggac caaggggcca aaccatgagg acccctttga aacaatgata
4861 ccacactccc aaagacccat acaactgatg tcattacttg gtgaagctgc actacatggt
4921 ccatcattct acagtaaaat cagcaaattg gtcatttcag aactgaaaga gggtggaatg
4981 gatttttacg tgcccagaca agaaccaatg ttcaggtgga tgagattctc agatttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccgctcca tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat
5161 ggcgctagag ccagtggcgg gtgcagcgat agcagcaccc ctcactggtc agcaaaatat
5221 aattgatccc tggattatga ataattttgt gcaagctcct ggtggtgagt ttacagtgtc
5281 ccccagaaat tcccctggtg aagtccttct taatttggaa ttgggcccag aaataaatcc
5341 ctacttggcc catcttgcta gaatgtataa tggttatgca ggtggatttg aagtgcaggt
5401 ggtcctagct ggaaatgcgt ttacagcagg aaagataatc tttgcagcta ttccccccaa
5461 ttttccagtt gacaatttaa gtgcagcaca gatcacaatg tgcccacatg tgattgtgga
5521 tgtcagacag ttggaaccag tcaacctccc gatgcctgac gttcgcaata acttctttca
5581 ctataatcaa gggtctgatt cgaggttacg tctaattgca atgctatata cacctcttag
5641 agcaaacaat tctggggatg atgtttttac tgtgtcttgt agagtgctaa ccagacctag
5701 tcctgatttc tcatttaatt tccttgtgcc acctactgtg gaatcaaaaa caaaaccctt
5761 ctccctccct atcctgacta tctctgaaat gtccaactct aggttcccag taccaattga
5821 ttctctgcac accagtccta ctgagaatat tgttgttcag tgtcaaaatg ggcgcgtcac
5881 ccttgatggt gagttgatgg gcaccaccca actcttgcct agccaaatct gtgctttcag
5941 gggcgttctc accagatcaa cgagcagggc cagtgaccag gccgatacgg caactcctag
6001 attgtttaat tattattggc atatacaatt ggataatcta aatggaaccc cttatgatcc
6061 tgcagaagac ataccaggcc ccctagggac accagatttc cgtggcaaag tctttggcgt
6121 ggccagccag agaaatcctg ataccacgac tagggcacat gaagcaaagg tagacaccac
6181 atctggccgc ttcaccccaa agttaggctc attagagata tccactgaat ctagtgattt
6241 tgaccaaagc caaccaacaa gattcacccc agttggcatt ggagttgacc atgaggcaga
6301 ctttcaacaa tgggccctac ccgattacgc tggtcagttc acacacaaca tgaacttagc
6361 cccagctgtt gctcccaact tccctggtga acagctcctt ttcttccgct cacatttgcc
6421 atcttctggt gggcgatcca acgggattct agactgcctg gtcccccaag aatgggtaca
6481 gcacttctac caagagtcag ccccctctca gtctcaagtg gccttggtta ggtatgttaa
6541 tcctgacact ggtagagtgt tatttgaggc caagctacac aaattaggtt tcatgactat
6601 agctaagaat ggtgattctc caataactgt tcctccaaat ggatatttta ggtttgaatc
6661 ttgggtgaac cccttttata cacttgcccc catgggaact gggaatgggc gtagaaggat
6721 tcaataatgg ctggagcttt tatagcagga ttggctggtg atatgctcac aaatactgta
6781 ggatctttag ttaatacagg ggctaatgct attaatcaaa caattgattt tgaaaataat
6841 aaatatttgc aaaatgcttc ttttaatcat gataaggaga tgttgaatgc acaaattgag
6901 gcaacaaaga agttacaggc tgacatgatt gctatcaagc aaggggtctt gactgctggc
6961 ggcttctccc ctactgatgc agcccgtggg gcaattaatg cccccatgac aaaagtccta
7021 gattggaatg ggacgagata ctgggcacca ggtgccacct ccacaacctc gatgtcaggt
7081 ggctttacac atcaaactgt gcacagaccc acaccaaatt ttaaaacgaa ccaggctccc
7141 aaatccacac ccagcagtgg gtcttcagtg aggtcaaact caacccaaat cactagcctg
7201 agctcacact cgtccgggtc gtctcgatcc agcgggtcta cagttatcag ctcaatacca
7261 tcctctaaca ggactaggga ctgggtcaac caacaaaatt ttaatttgga accacacatg
7321 cctggatctc tcaggacagc ttttgtcact ccaccatcta gtacagcctc tagctcaggc
7381 acagtctcaa ctgtgcccaa aaatgttttg gactcctgga catctgcgtt taacacacgc
7441 agacagccgc tattcgcaca ccttcgcaga aggggggagt caaatgttta gtgaaaagat
7501 tattttaaat ttggtttaaa ttagatttaa tttggaatct tttaaaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaa
//