Typing tool
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Typing tool
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Complete norovirus genomes
| MW661253 | GII.17 | |
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| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6710
ORF3: 6710..7489
LOCUS MW661253 7589 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH15-067, complete genome.
ACCESSION MW661253
VERSION MW661253.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7589)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7589)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7589
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH15-067"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: Ottawa"
/collection_date="2015-08-11"
/note="Viral RNA extracted from fecal samples;
genotype: GII.17_GII.P17"
gene 5..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58378.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGAR
PKQPPPGETKQTQKPPRPPTPELVKKIPPPPPNGEDEPKIAYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLEL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLKPLNILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
RTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEEK
GGCPKPRDEDDLTIDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPMNQIQVHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPKPNVLESAKRTIINVLEQTIDPPEKWSYVQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKLYGKIKKRLLWG
SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2638
/gene="ORF1"
/product="p22"
mat_peptide 2639..3037
/gene="ORF1"
/product="VPg"
mat_peptide 3038..3580
/gene="ORF1"
/product="Pro"
mat_peptide 3581..5110
/gene="ORF1"
/product="RdRp"
gene 5094..6710
/gene="ORF2"
CDS 5094..6710
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58379.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPKFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNHPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6710..7489
/gene="ORF3"
CDS 6710..7489
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58380.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSGSVHSMSTQLT
SLTSGSLSNASSASTKLTNSSSGSSQNRTAEWVNQQRSLGPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa
121 agccctcggg gcgcggccta agcagccgcc cccgggagaa acaaaacaaa cacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gaaaataccc ccacccccac ccaatggcga
241 ggatgaacca aagatagcgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
301 aaccgtggca cagcctgacg cacaaaacac agcctatagt gttcccccac ttagccagag
361 agaggtcggc gaagctaaag aaccgttgcc tggttccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgta ctcggagtac acaaaccacc
481 tgctgcaata agccttgcca aaattgaatt aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagctccaga aactcttaag aacttaagtg gagagacttt
601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagaactcaa
661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca gaccgtatca
721 ggattggaac agaaaaccct tgccaactat ggatgaaccg aaaatcaaga aggccgcgaa
781 tgctgttctg tgtgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
841 gcttaaacca ctgaacattc ttaatatact agcaacctgt gattggactt ttgcgggcat
901 agtggaatcc atgatccttc ttgctgaact ctttggggtg ttctggaccc ccccagatgt
961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
1021 cgtggaactt gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgta aggatctagg
1141 atcttatggg ttggagatac tcaaactggt catgaagtgg ttcttcccca agaaggagga
1201 ggccaacgaa ttagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca cccttctcaa ggacaaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag aaaaagcaag gaaactgtca accaaatcgg catcacccga
1381 catcgtgggc acaataaacg cattattggc aaggatagca gccgccaggt cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact
1561 gtcaggcgat caaaggattg gactgatacc tagaaatggc gtcgaccatt gggacgccta
1621 caaaggagag agggtggttc tgtgggatga ttatggcatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg acaggattga
1741 aaacaaagga aaagtgttcg acagtgacgc cataatcata acaaccaacc ttgcaaaccc
1801 agcaccactg gactacgtca acttcgaggc ctgttctaga cgcatagatt tcttggtgta
1861 tgcagacgca cctgacatcg agaaggctaa gcgtgatttc cctggccaac cagatatgtg
1921 gaaagaccat tacagaccag acttcacaca cattaaactt cagctggcac cacagggagg
1981 ctttgataaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtctc tgacgattgg
2041 ttctctgatc gccagggctt ctggcttgct ccacgagaga atggatgaat tcgagctcca
2101 gggctctgac ctgccaacct tcaatttcga ccgcaacaaa gtcgccgcct tcagacaatt
2161 agcagctgaa aacaaatatg gtcttatgga cacgctgagg gtcggcaacc aactgaaaag
2221 cgtcagaacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgcca
2281 gatagtgtat aatgggtgca cctataccat ggaatctgat gggaggaaca aggtcgtggt
2341 tgaaaaggtt caaaatgcaa cagttcaaac caacaatgaa cttgcaggag cactccacca
2401 cctgagatct gcaaggataa gatattatgt taaatgtttc caggaagcta tttactctct
2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatctc
2521 aaacctctgg tcgaagccac ccatcgaaga gggtgatgag cctgaagaaa aaggaggatg
2581 ccccaagccc agggatgaag atgatctcac tattgactct aaagacatta aggtggaagg
2641 gaagaagggc aagaacaaat ctggccgggg caagaaacac acagctttct catccaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagaa atggcaaata
2761 ctcaatagag gaatacctcc aagacaggga tagatactat gaagagcttg ccattgctaa
2821 ggccactgag gaagacttct gtgaagagga ggaaatcaaa attcgccaga gaatcttccg
2881 acccactagg aagcagcgga aagaggaaag ggccacactt gggcttgtca caggatcgga
2941 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagtgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gatggggatt ctgggtttct ccaagtctct tcataacttc
3121 aacacacgtc ataccaaaag ggatcactga ggcctttgga gtgcccatga accaaatcca
3181 agttcacaaa tctggagaat tttgccgctt gcggtttcca aaaccaatca gaccagacgt
3241 gagtgggatg atcttggaag agggtgcccc tgaaggcact gttgtgtcca ttctcatcaa
3301 gaggacaaca ggggagctga tgcctctcgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacagtgg gtggtcagat gggtatgctc ctcactggct cgaatgctaa
3421 gagcatggat ctaggcacaa caccaggtga ttgcgggtgc ccatacatat acaaaagggg
3481 caatgacttc gtggtcattg gggtgcacac tgcagcagct cgtggaggca atacggtcat
3541 atgtgccaca cagggaagtg aaggtgaagc cactctcgaa ggaggtgaca acaagggcac
3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaaaacaaa
3661 attctggagg tcttctaatg caccgcttcc cccaggtact tatgaaccag catatcttgg
3721 tggaagagac ccccgtgtga agggaggccc atccctgcaa caggttatga gagaccaact
3781 taaacctttc acagagccca gagggaagcc accaaagcca aatgtcctag aatcagcaaa
3841 gaggactatc atcaatgttc tggaacaaac cattgacccc cctgaaaagt ggtcatatgt
3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcatc acgtccggaa
3961 gaatgactat tggagtggtg aatccttcac ggggaaactt gcagaccagg cctcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaaactgaca aactttatgg caagatcaag aaaagactcc tgtggggctc
4141 tgacctatcc accatgattc gatgcgccag agcatttggt ggtctcatgg atgagttcaa
4201 agcaaattgt attacactcc ctatcagagt tggtatgaac atgaatgaag atggccccat
4261 aatatttgaa aaacactcta ggtacagata ccactatgat gccgattact cccgctggga
4321 ctccacacag cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgacttc aaaattgcta ttaatgaagg cctaccatct ggcgtgcctt gcacttcaca
4501 atggaattct attgcccact ggttactcac cctgtgtgcc ctgtctgaag tgacaggact
4561 aggtcctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgaaattgt
4621 gagcacagac ataaaattgg acccagagaa attgactgca aagctcaaag aatatggcct
4681 taaacccact cggcccgaca aaactgaagg gccgctggtg attagtgagg acctgaatgg
4741 gttgactttc ctccgccgaa cagtcacccg cgatccagca ggttggtttg gaaagttgga
4801 ccaaaactct attctcaggc agctgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacagagacc tgtgcagctc atggcactac taggagaatc
4921 ctccctacat ggaccctcat tttacagcaa ggttagcaag ctggtcatat ctgaacttaa
4981 agagggggga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgcc ccatctaatg atggtgctgc tggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaacaa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5281 agttcacagt gtcacccaga aactctcctg gagaaatttt actaaaccta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaatg cgttcactgc cgggaagatc ctcttcgccg
5461 ccgtcccgcc aaatttccca gtggaattcc taagcccagc ccagattaca atgctcccac
5521 atataatagt agatgttaga actcttgaac caatcatgat cccactacct gatgttagga
5581 atacattctt ccattataac aaccagccca acagccgcat gagattagtg gctatgctct
5641 atacccccct tagatctaat ggctcaggtg atgatgtttt tactgtttct tgcagggttt
5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5761 agactaagcc tttttcctta cccattctaa ccctttctga gcttacaaat tcgaggttcc
5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttacaggta cagtgtcaaa
5881 atggcaggtg cacacttgat ggtgagttac aaggcacaac ccagttgctc ccttctggca
5941 tctgtgcatt cagaggacgg gtgacagcag aaactgacaa ccctgacaag tggcacatgc
6001 aactgcaaaa cctcaatggc acaacatatg acccaactga tgatgtgcca gccccactgg
6061 gtacacctga cttcaagggc gtcgtgtttg gggtagcaag ccaaagaaat gtgggtaacg
6121 atgcgcctgg ctcaaccagg gcccatgagg cggtgatttc gacctatagc cccaaatttg
6181 tccccaaatt aggctctgtc aattttaaaa gtaatgatga tgatttccaa ttgcagccga
6241 caagattcac accagtgggc atcaatgacg atggtaacca cccgttcaga caatgggaac
6301 taccagacta ttcaggggtg cttaccttga atatgaatct tgcccccccg gttgctccaa
6361 attttcctgg tgaacaatta ttattcttca gatccttcgt gccatgttca ggaggttata
6421 accaaggcat tatagattgt cttattcccc aagaatggat ccaacatttc tatcaggaat
6481 cagcaccctc ccagtcagat gtggccctga tcaggtatgt caaccctgac acgggacgca
6541 cactgtttga agcaaaattg cacaggtctg gctatatcac tgtggctcac tctggagact
6601 atcctcttgt tgttccggct aatggatact ttagatttga ttcttgggta aaccagtttt
6661 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtga tggctggagc
6721 tttcattgca ggattggcag gcgacatgct cacgtcatct gtgggctccc tggtgaacgc
6781 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6841 ttcctttcag catgataaag agatgcttca agcgcaggtg aaggcaacta aacagctgca
6901 atctgaaatg atagccctaa aacaaggggt tttggccgca ggcggctttt cccccactga
6961 tgcagcgagg ggagccatcg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
7021 gtactgggca cccaactcca caaagacaac tggttattcg gggcaattca cctcttcacc
7081 tgtgcacatg cctagcccaa atgctccaca atcaaaaccc gcaaagccca ggtctctagc
7141 tccttcctct tcttctggta gtgtccatag tatgtctacc caactaactt ctctaacatc
7201 tggctctctt agtaatgctt cttctgcctc tacaaaattg acaaattcaa gctctggctc
7261 ctctcaaaac agaacagcag agtgggtgaa ccaacagaga agtcttggcc ctttcatgag
7321 tggcgcactc aatatttcac atgtcacgcc accctcaagt agggcctcca gttctgggac
7381 ggtctcgacc gtgcccaagg aagttttgga ctcctggaca tctgcattta acacacgcag
7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat
7501 aattggctaa aatatgattt ctttaaaatt tggctaattt gtatctttta aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//