Typing tool
|
Complete norovirus genomes
MW661252 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 2..5101 ORF2: 5082..6704 ORF3: 6704..7510LOCUS MW661252 7596 bp RNA linear VRL 28-SEP-2021 DEFINITION Norovirus GII isolate BMH15-063 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MW661252 VERSION MW661252.1 DBLINK BioProject: PRJNA396739 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7596) AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and Weedmark,K. TITLE Genomic Analysis of Human Noroviruses Using Hybrid Illumina-Nanopore Data JOURNAL Unpublished REFERENCE 2 (bases 1 to 7596) AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and Weedmark,K. TITLE Direct Submission JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada, 251 SIR FREDERICK BANTING, Ottawa ON, Canada COMMENT ##Assembly-Data-START## Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23 Sequencing Technology :: Illumina; Nanopore ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7596 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="BMH15-063" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Canada: Ottawa" /collection_date="2015-04-10" /note="Viral RNA extracted from fecal samples; genotype: GII.4_Sydney_2012_GII.P31(GII.Pe)" gene 2..5101 /gene="ORF1" CDS 2..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QSD58375.1" /translation="MKMASNDASAAAVANSNNDIVKSSSDGVFSNMAVTFKRALGARP KQPPPKETPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGC LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRNDVAGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRFHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 2..991 /gene="ORF1" /product="p48" mat_peptide 992..2089 /gene="ORF1" /product="NTPase" mat_peptide 2090..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6704 /gene="ORF2" CDS 5082..6704 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QSD58376.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHQNEPQQWMLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" gene 6704..7510 /gene="ORF3" CDS 6704..7510 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QSD58377.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQVEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRDAVPARGSSSKSP NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 aatgaagatg gcgtctaacg acgcttccgc tgccgctgtt gccaacagca acaacgacat 61 cgtaaaatct tcaagtgacg gtgtgttttc taacatggct gtcactttta agcgggccct 121 cggggcgcgg cctaaacagc cgcccccgaa ggaaacacca cccagacccc cgcgaccacc 181 cacaccagaa ttggtcaaaa agatccctcc tcccccaccc aacggggagg atgaactagt 241 ggtctcttac agcgccaaag atggtgtttc cggactgcct gagctcacca ctgtcagaca 301 accggaagaa accaacacgg cgttcagtgt ccccccactc aaccaaaggg agagcaggga 361 cgccaaggag ccactaactg gaacaattat tgaaatgtgg gatggagaaa tctaccacta 421 cggcctgtac gtggaacgag gtcttatact tggtgtgcac aaaccaccgg cagccatcag 481 ccttgccaag gtcgagctgg caccgctctc tttgttttgg agacctgtgt acacccccca 541 gtatctcatc tctccagaca ctcttaggag attacatgga gagacattcc cctacactgc 601 atttgacaac aattgctacg ccttttgttg ttgggtatta gacctgaacg actcatggct 661 aagcaggaga atgattcaga gaacaacagg tttcttcagg ccgtaccagg attggaacag 721 gaaacccctc cccactatgg atgattccaa attaaagaag gtagccaaca tattcttgtg 781 cactttgtct tcactattca ccagacccat taaggacata atagggaagt tgaaacctct 841 taacatcctt aacattctgg ctacatgtga ttggaccttc gcaggcatag tggaatcctt 901 aatactcttg gcagaactct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat 961 cgcccccttg ctaggtgatt atgaactgca aggacctgag gaccttgcag tggaactggt 1021 cccaatagtg atggggggga taggtttggt gctaggattt accaaagaga aaatcggaaa 1081 gatgctatca tccgctgcat ccactttaag agcttgtaaa gaccttggtg catacggatt 1141 ggaaatctta aaattggtca tgaagtggtt tttcccaaag aaagaggaag caaatgagtt 1201 ggctatagtg agatccatcg aggatgcagt actagacctc gaggcaattg aaaacaacca 1261 catgaccacc ctactcaagg acaaagacag cttggcaacc tacatgagaa cccttgacct 1321 tgaggaggag aaagccagaa aactctcaac caaatctgct tcacccgata ttgtgggcac 1381 aatcaactct ctcctggcaa gaatcgctgc tgcacgctcc ctagtgcatc gggcgaaaga 1441 agagctctcc agcaggccta gacctgtcgt tgtgatgata tcgggaagac cagggatagg 1501 gaaaactcac cttgccaggg agctggccaa gaagatcgcg gcctccctca caggggacca 1561 gcgtgtgggc cttatcccac gcaatggtgt cgaccactgg gacgcataca agggcgaaag 1621 agttgtccta tgggacgact atggaatgag caaccccatc cacgatgctc tcaggttgca 1681 ggagcttgct gacacttgcc ccctcacgct aaattgtgac agaattgaga acaaagggaa 1741 agtctttgac agtgatgcca taattatcac caccaacctg gccaacccag caccactaga 1801 ttatgtcaac tttgaagcgt gctcgagacg cattgacttc ctcgtgtacg cagaagcccc 1861 tgaggtagag aaggcaaagc gcgacttccc aggccaacct gacatgtgga agaacgcttt 1921 cagtcctgac ttctcacaca taaaactttc attggctcca cagggtggtt ttgacaagaa 1981 cggcaacacc ccgcatggaa aaggagtcat gaagaccctc accactggct ccctcatcgc 2041 ccgagcatca gggttactcc atgagaggct agatgaatat gaactgcaag gcccagccct 2101 caccactttc aactttgacc gcaacaagat acttgctttt agacaacttg ctgctgaaaa 2161 caagtatggg ttgatggaca caatgagagt tggaaaacag cttaaggatg tcaagaccat 2221 gtcagacctc aaacaagcac tcaagaacat cgcgatcaag aagtgccaga tagtgtacaa 2281 tggtggcacc tacacacttg aggccgatgg caagggtagt gtaaaagttg acaaagtgca 2341 aagtgccact gtgcagacca acaatgaact agccggtgcc ctacaccacc taaggtgcgc 2401 tagaatcaga tattatgtta agtgcgtcca ggaggcactg tattccatca tccaaatcgc 2461 tggggctgca ttcgtcacca cgcgcatcgc caagcgcatg aatatacaga atctctggtc 2521 caagccacag gtggaagaca cagaagagat ggccaacaaa gatggttgcc taaaacccaa 2581 agatgatgaa gagtttgtcg tctcatccga cgacatcaaa actgagggca agaaagggaa 2641 gaacaagtcc ggccgtggca agaagcacac agccttttca agcaaagggc tcagtgatga 2701 ggagtacgat gagtacaaga gaatcagaga agaaaggaat ggcaagtact ccatagaaga 2761 gtaccttcag gacagagaca ggtactacga ggaggtggcc attgccaggg caaccgaaga 2821 ggacttctgt gaagaagaag aggccaaaat ccggcagaga attttcagac caacaaggaa 2881 acaacgcaaa gaagagaggg cctctctcgg cttggtcaca ggctctgaaa tcaggaagag 2941 aaacccagaa gacttcaaac ccaagggaaa gctgtgggct gacgatgaca gaagtgttga 3001 ctacaatgag aaactcaact ttgaggcacc accaagcatc tggtcacgga tagtcaactt 3061 tggttcaggc tggggcttct gggtctcccc cagtctgttt ataacatcaa cccatgtcat 3121 accccaaggt gcaaaagagt tcttcggagt ccctatcaag caaatccaga tacacaaatc 3181 aggtgaattc tgccggttga gattcccaaa gccaatcaga aatgatgtgg cgggtatgat 3241 tctagaagaa ggtgcgcccg aggggaccgt ggccacatta ctcatcaaga gaccaactgg 3301 agagctcatg cctctggcag ccagaatggg gacccatgcg accatgaaaa ttcaggggcg 3361 cacagttgga gggcaaatgg gtatgctcct gacaggatcc aacgccaaga gtatggacct 3421 aggcacaaca ccaggcgact gcggctgccc ctacatctat aagaggggga atgactacgt 3481 ggtcataggg gtccatacgg ccgctgcccg tgggggaaac actgtcatat gtgccaccca 3541 ggggagtgag ggagaagcca cacttgaagg aggtgacagt aaagggacat actgtggcgc 3601 accaatcttg ggaccaggga gtgctccgaa gctcagtacc aagactaagt tttggagatc 3661 atccacaaca ccactcccac ctggcaccta cgaaccagcc tacctcggtg gcaaagaccc 3721 tagagtcaaa ggtggccctt cattgcaaca agttatgagg gaccagctga agccattcac 3781 agaacccaga ggcaaaccac caagaccaaa tgtgttggaa gctgccaaga aaaccatcat 3841 caatgttctt gagcaaacaa ttgatccacc ccaaaaatgg tcatttgcgc aagcttgcgc 3901 atcccttgac aaaaccacct ccagtggcca cccgcaccac atgcggaaaa acgactgttg 3961 gaatggggag tccttcacag gaaaattggc tgatcaagcc tccaaagcca acttaatgtt 4021 tgaagaggga aagaacatga ctccagtcta cacaggtgca cttaaagatg agttggtaaa 4081 gaccgataaa gtttatggta aggtcaagaa gagacttctg tggggttcag atctggcgac 4141 catgatacgg tgcgcccgag cttttggagg ccttatggat gaactcaagg cgcactgtgt 4201 cacacttcct gtcagagttg gtatgaacat gaatgaggat ggccccatca tctttgagaa 4261 gcactccaga tatagatttc actatgatgc tgattattcc cggtgggact caacacaaca 4321 aagggatgtg ctagcagcag cactagaaat catggttaag ttttctccag aaccacacct 4381 ggcccagata gttgcagaag acctcctttc ccctagcgta atggatgtag gtgactttca 4441 aatatcaata agtgagggtc tcccctctgg ggtaccttgt acctcccagt ggaattccat 4501 cgcccactgg ctcctcactc tgtgtgcact ctctgaagtc acggacctgt cccctgacat 4561 cattcaggcc aactcccttt tctccttcta tggtgatgat gagattgtaa gcacagacat 4621 aaagttggac ccagagaagc tgacagcgaa actcaaggag tacgggctaa aaccaacccg 4681 ccccgacaaa actgaaggac cgcttgttat ctctgaagac ctggatggcc tgacattcct 4741 ccggagaact gtgacccgtg atccagctgg ctggtttgga aaactggaac aaagttcaat 4801 tctcaggcaa atgtactgga ctaggggccc caaccatgaa gatccatttg aaacaatgat 4861 accacactcc caaagaccca tacaattgat gtccttgctg ggcgaggctg cactccacgg 4921 cccggcattc tatagcaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat 4981 ggatttttac gtgcccagac aagagccaat gttcagatgg atgagattct cagatctgag 5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg 5101 acgccaaccc atctgatggg tccgcagcca acctcgtccc agaggtcaac aatgaggtta 5161 tggctctgga gcccgttgtt ggtgccgcca ttgcggcacc cgtagcgggc caacaaaatg 5221 taattgaccc ctggattaga aataattttg tgcaagcccc tggtggagag tttacagtgt 5281 cccctagaaa cgctccaggt gaaatactat ggagcgcgcc cttgggtcct gatctaaatc 5341 cctacctatc ccatttggcc agaatgtaca atggttatgc aggtggtttt gaagtgcagg 5401 taattctcgc ggggaacgcg ttcaccgccg ggaaggtcat atttgcagca gtcccaccaa 5461 attttccaac tgaaggcttg agccccagcc aggtcactat gttcccccat atagtagtag 5521 atgttaggca actagaacct gtgttgattc ccttacccga tgtcaggaat aatttttatc 5581 attacaatca atcaaatgac cccaccatta agttgatagc aatgttgtat acaccactta 5641 gggctaataa tgctggggac gatgttttca cagtttcttg ccgagttctc acgagaccat 5701 cccctgattt tgatttcata tttctagtgc cacccacagt tgagtcaaga actaaacctt 5761 tctctgtccc agttttaact gttgaggaga tgaccaattc aaggttcccc attcctttgg 5821 aaaagttgtt cacgggtccc agcagtgcct ttgttgtcca accacaaaac ggcaggtgca 5881 cgactgatgg cgtgctccta ggcactaccc aactgtctcc tgtcaacatc tgcaccttca 5941 gaggagatgt cacccatatc acaggtagtc gtaactacac aatgaatttg gcttctcaaa 6001 actggaacaa ttatgaccca acagaagaaa tcccagcccc cctaggaact ccagattttg 6061 tggggaagat tcaaggcgtg ctcacccaaa ccacaaggac agatggctca acacgcggcc 6121 acaaagctac agtgtacact gggagcgccg actttgcccc aaaactgggt agagttcaat 6181 ttgaaactga cacagaccat gactttgaag ctaaccaaaa cacaaagttc accccagttg 6241 gtgttatcca agatggtagc accacccacc aaaatgaacc ccaacagtgg atgctcccaa 6301 gttactcagg tagaaatact cataatgtgc atctggcccc cgctgtagcc cccacttttc 6361 cgggtgagca acttctcttc ttcagatcca ccatgcccgg atgcagcggg taccccaaca 6421 tggatttaga ctgtctgctt ccccaggaat gggtgcagta cttctaccaa gaggcagccc 6481 cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc agacacaggt agggttctgt 6541 ttgagtgtaa gcttcataaa tcaggctatg ttacagtggc tcacactggc caacatgatt 6601 tggttatccc ccccaatggt tattttaggt ttgattcctg ggtcaaccag ttttacacgc 6661 ttgcccccat gggaaatgga acggggcgca gacgtgcagt ataatggctg gagctttctt 6721 tgctggattg gcatctgatg tccttggctc tggactcggt tctcttatca atgctggggc 6781 tggggccatc aaccaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt 6841 ccaatttagc agcaatctac aacaggcttc cttccaacat gacaaagaga tgctccaagc 6901 acaagttgag gccaccaaaa agttacaaca ggaaatgatg aaagttaagc aggcaatgct 6961 cctagagggt gggttctctg agacagatgc agcccgcggg gcaatcaacg cccccatgac 7021 aaaagctttg gactggagcg ggacaaggta ctgggctccc gatgctagga ctacaacata 7081 caatgcaggc cgcttttcca cccctcaacc atcgggggca ctgccaggaa gaactaatct 7141 tagggatgct gtccctgctc ggggttcctc cagcaaatct cctaattctt ccactgctac 7201 ttctgtgtac tcaaatcaaa ctacttcaac gagacttggt tctacagctg gttctggtac 7261 cagtgtctcg agcttcccgt cgactgcgag gactaggagt tgggttgagg atcaaagcag 7321 gaatttgtca cctttcatga ggggggccca caacatatcg tttgtcaccc caccatctag 7381 cagatcctct agccaaggca cagtctcaac cgtgcctaaa gaggttttgg actcctggac 7441 tggcgctttc aacacgcgca ggcagccact cttcgctcac attcgtaagc gaggggagtc 7501 acgggcgtaa tgtgaaaaga caaaattgat tatctttctt tttctttagt gtcttttaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //