Typing tool
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Typing tool
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Complete norovirus genomes
| MW661252 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 2..5101
ORF2: 5082..6704
ORF3: 6704..7510
LOCUS MW661252 7596 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH15-063 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MW661252
VERSION MW661252.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7596)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7596)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7596
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH15-063"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Canada: Ottawa"
/collection_date="2015-04-10"
/note="Viral RNA extracted from fecal samples;
genotype: GII.4_Sydney_2012_GII.P31(GII.Pe)"
gene 2..5101
/gene="ORF1"
CDS 2..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58375.1"
/translation="MKMASNDASAAAVANSNNDIVKSSSDGVFSNMAVTFKRALGARP
KQPPPKETPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE
ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM
SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGC
LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRNDVAGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRFHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 2..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6704
/gene="ORF2"
CDS 5082..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58376.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHQNEPQQWMLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6704..7510
/gene="ORF3"
CDS 6704..7510
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58377.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQVEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRDAVPARGSSSKSP
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 aatgaagatg gcgtctaacg acgcttccgc tgccgctgtt gccaacagca acaacgacat
61 cgtaaaatct tcaagtgacg gtgtgttttc taacatggct gtcactttta agcgggccct
121 cggggcgcgg cctaaacagc cgcccccgaa ggaaacacca cccagacccc cgcgaccacc
181 cacaccagaa ttggtcaaaa agatccctcc tcccccaccc aacggggagg atgaactagt
241 ggtctcttac agcgccaaag atggtgtttc cggactgcct gagctcacca ctgtcagaca
301 accggaagaa accaacacgg cgttcagtgt ccccccactc aaccaaaggg agagcaggga
361 cgccaaggag ccactaactg gaacaattat tgaaatgtgg gatggagaaa tctaccacta
421 cggcctgtac gtggaacgag gtcttatact tggtgtgcac aaaccaccgg cagccatcag
481 ccttgccaag gtcgagctgg caccgctctc tttgttttgg agacctgtgt acacccccca
541 gtatctcatc tctccagaca ctcttaggag attacatgga gagacattcc cctacactgc
601 atttgacaac aattgctacg ccttttgttg ttgggtatta gacctgaacg actcatggct
661 aagcaggaga atgattcaga gaacaacagg tttcttcagg ccgtaccagg attggaacag
721 gaaacccctc cccactatgg atgattccaa attaaagaag gtagccaaca tattcttgtg
781 cactttgtct tcactattca ccagacccat taaggacata atagggaagt tgaaacctct
841 taacatcctt aacattctgg ctacatgtga ttggaccttc gcaggcatag tggaatcctt
901 aatactcttg gcagaactct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat
961 cgcccccttg ctaggtgatt atgaactgca aggacctgag gaccttgcag tggaactggt
1021 cccaatagtg atggggggga taggtttggt gctaggattt accaaagaga aaatcggaaa
1081 gatgctatca tccgctgcat ccactttaag agcttgtaaa gaccttggtg catacggatt
1141 ggaaatctta aaattggtca tgaagtggtt tttcccaaag aaagaggaag caaatgagtt
1201 ggctatagtg agatccatcg aggatgcagt actagacctc gaggcaattg aaaacaacca
1261 catgaccacc ctactcaagg acaaagacag cttggcaacc tacatgagaa cccttgacct
1321 tgaggaggag aaagccagaa aactctcaac caaatctgct tcacccgata ttgtgggcac
1381 aatcaactct ctcctggcaa gaatcgctgc tgcacgctcc ctagtgcatc gggcgaaaga
1441 agagctctcc agcaggccta gacctgtcgt tgtgatgata tcgggaagac cagggatagg
1501 gaaaactcac cttgccaggg agctggccaa gaagatcgcg gcctccctca caggggacca
1561 gcgtgtgggc cttatcccac gcaatggtgt cgaccactgg gacgcataca agggcgaaag
1621 agttgtccta tgggacgact atggaatgag caaccccatc cacgatgctc tcaggttgca
1681 ggagcttgct gacacttgcc ccctcacgct aaattgtgac agaattgaga acaaagggaa
1741 agtctttgac agtgatgcca taattatcac caccaacctg gccaacccag caccactaga
1801 ttatgtcaac tttgaagcgt gctcgagacg cattgacttc ctcgtgtacg cagaagcccc
1861 tgaggtagag aaggcaaagc gcgacttccc aggccaacct gacatgtgga agaacgcttt
1921 cagtcctgac ttctcacaca taaaactttc attggctcca cagggtggtt ttgacaagaa
1981 cggcaacacc ccgcatggaa aaggagtcat gaagaccctc accactggct ccctcatcgc
2041 ccgagcatca gggttactcc atgagaggct agatgaatat gaactgcaag gcccagccct
2101 caccactttc aactttgacc gcaacaagat acttgctttt agacaacttg ctgctgaaaa
2161 caagtatggg ttgatggaca caatgagagt tggaaaacag cttaaggatg tcaagaccat
2221 gtcagacctc aaacaagcac tcaagaacat cgcgatcaag aagtgccaga tagtgtacaa
2281 tggtggcacc tacacacttg aggccgatgg caagggtagt gtaaaagttg acaaagtgca
2341 aagtgccact gtgcagacca acaatgaact agccggtgcc ctacaccacc taaggtgcgc
2401 tagaatcaga tattatgtta agtgcgtcca ggaggcactg tattccatca tccaaatcgc
2461 tggggctgca ttcgtcacca cgcgcatcgc caagcgcatg aatatacaga atctctggtc
2521 caagccacag gtggaagaca cagaagagat ggccaacaaa gatggttgcc taaaacccaa
2581 agatgatgaa gagtttgtcg tctcatccga cgacatcaaa actgagggca agaaagggaa
2641 gaacaagtcc ggccgtggca agaagcacac agccttttca agcaaagggc tcagtgatga
2701 ggagtacgat gagtacaaga gaatcagaga agaaaggaat ggcaagtact ccatagaaga
2761 gtaccttcag gacagagaca ggtactacga ggaggtggcc attgccaggg caaccgaaga
2821 ggacttctgt gaagaagaag aggccaaaat ccggcagaga attttcagac caacaaggaa
2881 acaacgcaaa gaagagaggg cctctctcgg cttggtcaca ggctctgaaa tcaggaagag
2941 aaacccagaa gacttcaaac ccaagggaaa gctgtgggct gacgatgaca gaagtgttga
3001 ctacaatgag aaactcaact ttgaggcacc accaagcatc tggtcacgga tagtcaactt
3061 tggttcaggc tggggcttct gggtctcccc cagtctgttt ataacatcaa cccatgtcat
3121 accccaaggt gcaaaagagt tcttcggagt ccctatcaag caaatccaga tacacaaatc
3181 aggtgaattc tgccggttga gattcccaaa gccaatcaga aatgatgtgg cgggtatgat
3241 tctagaagaa ggtgcgcccg aggggaccgt ggccacatta ctcatcaaga gaccaactgg
3301 agagctcatg cctctggcag ccagaatggg gacccatgcg accatgaaaa ttcaggggcg
3361 cacagttgga gggcaaatgg gtatgctcct gacaggatcc aacgccaaga gtatggacct
3421 aggcacaaca ccaggcgact gcggctgccc ctacatctat aagaggggga atgactacgt
3481 ggtcataggg gtccatacgg ccgctgcccg tgggggaaac actgtcatat gtgccaccca
3541 ggggagtgag ggagaagcca cacttgaagg aggtgacagt aaagggacat actgtggcgc
3601 accaatcttg ggaccaggga gtgctccgaa gctcagtacc aagactaagt tttggagatc
3661 atccacaaca ccactcccac ctggcaccta cgaaccagcc tacctcggtg gcaaagaccc
3721 tagagtcaaa ggtggccctt cattgcaaca agttatgagg gaccagctga agccattcac
3781 agaacccaga ggcaaaccac caagaccaaa tgtgttggaa gctgccaaga aaaccatcat
3841 caatgttctt gagcaaacaa ttgatccacc ccaaaaatgg tcatttgcgc aagcttgcgc
3901 atcccttgac aaaaccacct ccagtggcca cccgcaccac atgcggaaaa acgactgttg
3961 gaatggggag tccttcacag gaaaattggc tgatcaagcc tccaaagcca acttaatgtt
4021 tgaagaggga aagaacatga ctccagtcta cacaggtgca cttaaagatg agttggtaaa
4081 gaccgataaa gtttatggta aggtcaagaa gagacttctg tggggttcag atctggcgac
4141 catgatacgg tgcgcccgag cttttggagg ccttatggat gaactcaagg cgcactgtgt
4201 cacacttcct gtcagagttg gtatgaacat gaatgaggat ggccccatca tctttgagaa
4261 gcactccaga tatagatttc actatgatgc tgattattcc cggtgggact caacacaaca
4321 aagggatgtg ctagcagcag cactagaaat catggttaag ttttctccag aaccacacct
4381 ggcccagata gttgcagaag acctcctttc ccctagcgta atggatgtag gtgactttca
4441 aatatcaata agtgagggtc tcccctctgg ggtaccttgt acctcccagt ggaattccat
4501 cgcccactgg ctcctcactc tgtgtgcact ctctgaagtc acggacctgt cccctgacat
4561 cattcaggcc aactcccttt tctccttcta tggtgatgat gagattgtaa gcacagacat
4621 aaagttggac ccagagaagc tgacagcgaa actcaaggag tacgggctaa aaccaacccg
4681 ccccgacaaa actgaaggac cgcttgttat ctctgaagac ctggatggcc tgacattcct
4741 ccggagaact gtgacccgtg atccagctgg ctggtttgga aaactggaac aaagttcaat
4801 tctcaggcaa atgtactgga ctaggggccc caaccatgaa gatccatttg aaacaatgat
4861 accacactcc caaagaccca tacaattgat gtccttgctg ggcgaggctg cactccacgg
4921 cccggcattc tatagcaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat
4981 ggatttttac gtgcccagac aagagccaat gttcagatgg atgagattct cagatctgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg
5101 acgccaaccc atctgatggg tccgcagcca acctcgtccc agaggtcaac aatgaggtta
5161 tggctctgga gcccgttgtt ggtgccgcca ttgcggcacc cgtagcgggc caacaaaatg
5221 taattgaccc ctggattaga aataattttg tgcaagcccc tggtggagag tttacagtgt
5281 cccctagaaa cgctccaggt gaaatactat ggagcgcgcc cttgggtcct gatctaaatc
5341 cctacctatc ccatttggcc agaatgtaca atggttatgc aggtggtttt gaagtgcagg
5401 taattctcgc ggggaacgcg ttcaccgccg ggaaggtcat atttgcagca gtcccaccaa
5461 attttccaac tgaaggcttg agccccagcc aggtcactat gttcccccat atagtagtag
5521 atgttaggca actagaacct gtgttgattc ccttacccga tgtcaggaat aatttttatc
5581 attacaatca atcaaatgac cccaccatta agttgatagc aatgttgtat acaccactta
5641 gggctaataa tgctggggac gatgttttca cagtttcttg ccgagttctc acgagaccat
5701 cccctgattt tgatttcata tttctagtgc cacccacagt tgagtcaaga actaaacctt
5761 tctctgtccc agttttaact gttgaggaga tgaccaattc aaggttcccc attcctttgg
5821 aaaagttgtt cacgggtccc agcagtgcct ttgttgtcca accacaaaac ggcaggtgca
5881 cgactgatgg cgtgctccta ggcactaccc aactgtctcc tgtcaacatc tgcaccttca
5941 gaggagatgt cacccatatc acaggtagtc gtaactacac aatgaatttg gcttctcaaa
6001 actggaacaa ttatgaccca acagaagaaa tcccagcccc cctaggaact ccagattttg
6061 tggggaagat tcaaggcgtg ctcacccaaa ccacaaggac agatggctca acacgcggcc
6121 acaaagctac agtgtacact gggagcgccg actttgcccc aaaactgggt agagttcaat
6181 ttgaaactga cacagaccat gactttgaag ctaaccaaaa cacaaagttc accccagttg
6241 gtgttatcca agatggtagc accacccacc aaaatgaacc ccaacagtgg atgctcccaa
6301 gttactcagg tagaaatact cataatgtgc atctggcccc cgctgtagcc cccacttttc
6361 cgggtgagca acttctcttc ttcagatcca ccatgcccgg atgcagcggg taccccaaca
6421 tggatttaga ctgtctgctt ccccaggaat gggtgcagta cttctaccaa gaggcagccc
6481 cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc agacacaggt agggttctgt
6541 ttgagtgtaa gcttcataaa tcaggctatg ttacagtggc tcacactggc caacatgatt
6601 tggttatccc ccccaatggt tattttaggt ttgattcctg ggtcaaccag ttttacacgc
6661 ttgcccccat gggaaatgga acggggcgca gacgtgcagt ataatggctg gagctttctt
6721 tgctggattg gcatctgatg tccttggctc tggactcggt tctcttatca atgctggggc
6781 tggggccatc aaccaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt
6841 ccaatttagc agcaatctac aacaggcttc cttccaacat gacaaagaga tgctccaagc
6901 acaagttgag gccaccaaaa agttacaaca ggaaatgatg aaagttaagc aggcaatgct
6961 cctagagggt gggttctctg agacagatgc agcccgcggg gcaatcaacg cccccatgac
7021 aaaagctttg gactggagcg ggacaaggta ctgggctccc gatgctagga ctacaacata
7081 caatgcaggc cgcttttcca cccctcaacc atcgggggca ctgccaggaa gaactaatct
7141 tagggatgct gtccctgctc ggggttcctc cagcaaatct cctaattctt ccactgctac
7201 ttctgtgtac tcaaatcaaa ctacttcaac gagacttggt tctacagctg gttctggtac
7261 cagtgtctcg agcttcccgt cgactgcgag gactaggagt tgggttgagg atcaaagcag
7321 gaatttgtca cctttcatga ggggggccca caacatatcg tttgtcaccc caccatctag
7381 cagatcctct agccaaggca cagtctcaac cgtgcctaaa gaggttttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagccact cttcgctcac attcgtaagc gaggggagtc
7501 acgggcgtaa tgtgaaaaga caaaattgat tatctttctt tttctttagt gtcttttaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//