Typing tool
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Typing tool
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Complete norovirus genomes
| MW661250 | GII.6 | |
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| GII.P7 |
ORF1: 1..5061
ORF2: 5042..6685
ORF3: 6685..7458
LOCUS MW661250 7505 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH14-056 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MW661250
VERSION MW661250.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7505)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7505)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH14-056"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: Ottawa"
/collection_date="2014-02-04"
/note="Viral RNA extracted from fecal samples;
genotype: GII.6_GII.P7"
gene <1..5061
/gene="ORF1"
CDS <1..5061
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58369.1"
/translation="FGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGAVPKGTKA
PSGDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEHENTPYT
VPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELT
PISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSI
SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL
HLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQGPEDLAVELVP
VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE
METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLMAFMKTLDLEEEKARKLSTKSSSPDI
VGTINAILARIAAARSLLHKAKEEMFSRIRPAVVMISGRPGIGKTHMARHLAKSIANT
MSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCD
RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG
QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER
RDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLEDLKVAL
RDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQARARYY
VSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEVAQGRWEIEP
KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR
YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDF
QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG
VKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGE
MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI
VVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKF
WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEA
KKTVMNVLEQIIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQA
SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL
MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME
VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL
SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE
GPLVITEDLTGLTFLRRSVARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS
QRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLST
WEGDRNLAPEGVNEDGVE"
mat_peptide <1..969
/gene="ORF1"
/product="p48"
mat_peptide 970..2067
/gene="ORF1"
/product="NTPase"
mat_peptide 2068..2586
/gene="ORF1"
/product="p22"
mat_peptide 2587..2985
/gene="ORF1"
/product="VPg"
mat_peptide 2986..3528
/gene="ORF1"
/product="Pro"
mat_peptide 3529..5058
/gene="ORF1"
/product="RdRp"
gene 5042..6685
/gene="ORF2"
CDS 5042..6685
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58370.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVLGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRVQ"
gene 6685..7458
/gene="ORF3"
CDS 6685..7458
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58371.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKVKVNSDSASVYSSASFAPSQST
HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 tttggcagcc aaaactctgt caatgacagt atcaacaccg ccccttctaa taaagaagag
61 gttggtgcat tctccaacat taaagttggt tttaagaaaa tgctgggtgc cgttcccaag
121 gggaccaaag cacccagtgg tgatcagcac tgcccctcag ttaagattgg gaccaagaca
181 ttaacagttc cccctgagcc cccaaatggt gaagacaccg tgcagtttga tgcgaagtcg
241 gaaacagtgc gcgggctacc agacttgaca acggtgcaga atgaacacga aaacacacca
301 tacaccgtcc ccccattgag tgaaagggag cacagaccag ccactgaacc gcttcctggc
361 acaatactgg agatgtggga tggtgaattc taccattact ctgtgtacgt cagcggtggc
421 aaagccctag gggttcacaa gccccctgca gcgataagcc tcgcgacgat agagctcaca
481 cccatatctc tttattggag gcccgtttac acccccaact atctggtctg tccagacacg
541 ttgaaaggcc ttgctggtga gaagttcccc tacacggcct tcagcaacaa ctgttacaac
601 ttctgttgct gggtgcttga actcaatgac acgtggctta gcaggagaag catctctagg
661 actaccggct tcttcaaacc atatcagtct tggaatagga aaccccttcc aaccgttgat
721 gatggaaaga tcaagaaggt ggccaacgca attctctgcg cacttggatc actgttttca
781 aaaccaatca aggacctatt gggcaaactc aaaccattga acctgctgca cttgctcgca
841 tcatgtgact ggacgtttgc gggtatagta gagacagtca tcctaatggc ggaacttttc
901 aacatctttt ggacaccgcc agatgtttcc agtttcatag cctccctgat aggtgatttt
961 gaattgcaag ggcctgagga cctggctgtg gagcttgtcc ccgtggtcat gggtggcata
1021 ggaatggttc tcggctttac tgctgagaag ataggccgca tgctgtcatc cgctgcatca
1081 acactacggg catgcaaaga cttggggaat tatgcccttg acatattgaa actggttatg
1141 aagtggttct tcccaaagaa agaagagaaa gccgagatgg aaaccctaag ggcgattgag
1201 gatgccgtcc tggacatgga agctatagga aacaaccatc tcacaaccct cctcaaggac
1261 aaggatagcc tcatggcttt catgaagact ctagatctag aagaggagaa ggcaaggaag
1321 ctgtccacca aatcatcctc gccagacatc gtcggcacta ttaatgccat actggccaga
1381 atagctgctg ccaggtccct cttgcacaag gctaaagaag aaatgtttag caggattaga
1441 cccgcggttg tcatgatctc gggtagacct ggcattggca aaacccacat ggcaagacac
1501 ttggctaaga gtatcgccaa caccatgagc ggcgaccaga gagtaggact catcccacgc
1561 aacggggtcg atcattggga cgcctacagg ggagagaggg tggtcttatg ggatgattat
1621 ggcatgggaa accctgtcaa agatgcccta acactgcaag agttggccga cacctgccca
1681 gtaactctaa actgtgatag gatcgagaac aaggggaaga tgtttgacag tgatgtcatc
1741 ataatcacga ccaatctagt caacccggcg cccctcgatt atgtaaactt cgaggcgtgc
1801 tccagaaggg tcgactttct ggtctatgca gagtcaccag aaattgagaa ggttaagaga
1861 gatttccccg gccaacctga catgtggaag gaccatttta agccagactt ttcccacata
1921 aaactgaccc tagccccaca gggtggattt gataagaatg gcaacacccc gcatggtaag
1981 ggcaccatgc gatccctaac ccagggttcc ctgactgcaa gggttgcagg tcttgttcat
2041 gagaggagag acgagtttca gctccagggg aacgaccttc aaacatacaa ctttgatacc
2101 aacagggtct ctgcatttag gaagctggcc gcagacaaca agtatgggat catggagact
2161 atgagagtgg gcacagcgct taagagtgtc aagaccttgg aggatctgaa agttgcactg
2221 agggatgtga agttcaatga gtgtgagata atttacagaa actccaagta ccgagtctct
2281 tccaatggta aaggttctgt ctctgttgac aaagttgagg accaaacatc ccagactgca
2341 aacgaagtgg gtgcagcact ccttagactc aggcaggcaa gagccagata ctatgtcagc
2401 tgcttccaag atctcgttta cactctaata caggtcgccg gagcatcatt cgttgtcaac
2461 aggatctcta aaaggttctg ctgggagaga tgggtcaaac caaccgagac ccaggaaacg
2521 agtgaatccg aaaaggaagt ggcccaaggc agatgggaga ttgagcccaa ggacacagag
2581 ccagaaggta agaagggtaa gaacaagaaa ggaagaggca agaaacacac agctttctcc
2641 agtaaaggcc tgagtgatga ggagtatgac gagttcaaga gaatcagaga agaaaggaac
2701 ggaaaatact ccattgagga atacctgcaa gaccgggatc gctactatga ggaagtggca
2761 gttgcccggg cgacagagga ggacttctgt gaagaggagg aggccaagat aagacaaaga
2821 atctttcgcc ccacgaagaa acagaggaag gaagaaaggg gggtgcttgg tttggtcact
2881 ggctcagaca tcaggaagag aagaccagac gattttcaac cgaagggtaa cctgtgggca
2941 gacgacacca ggagtgtgga ctacaacgag agacttgatt tcgaggcgcc tccgagtgtc
3001 tggtcgagaa tagtcccatt gggcactggc tggggcttct gggtctcatc aaacctcctg
3061 atcacaacga cacacgtcct gcctaagggg gttaaggaac tttttggagt tgaaatcaaa
3121 cagattcaaa tccataagtc tggagagttc tgcaggttca ggttcccgag accaattaga
3181 ccagatgtca cagggctcgt gttggaggaa ggcgctccag aaggcactgt ctgctccata
3241 ctcgtaaaga gacctacagg tgagatgatc cccttggcag tgaggatggg cacgcatgca
3301 tccatgaaaa tacagggtag gaccgtcggt ggccagatgg gaatgctcct cacaggggca
3361 aatgcgaaga acatggatct tggcaccggt cctggtgact gcggttgccc ttacatctac
3421 aaacgtggca atgatatagt tgtcgcgggt gtccacaccg cagcagcccg gggaggcaac
3481 actgtcatat gtgccactca agggcaagat ggggaagcag tccttgaggg aaatgagaac
3541 cttggcactt actgcggtgc cccaatcttg ggtccaggca aggcgcccaa acttagcacg
3601 aagaccaagt tctggcgctc atcaccagac gctttgccgc caggcactta tgagcctgcc
3661 tacttggggg gtaaggaccc cagagtggaa aaaggaccat ctctgcagca agtcatgagg
3721 gaccagctaa aacctttcac agaacccagg ggcaagccac ctagacctgc agtcttagaa
3781 gaggccaaaa agacagtgat gaatgttcta gagcaaatca ttgaccctgc taagccgtgg
3841 acctattccc aagcatgtgc ctcactggac aagaccactt ccagtggcag cccccatcat
3901 gtcaggaaaa atgaccattg gaatggggaa tccttcactg gcccccttgc agaccaagca
3961 tccaaagcca acctcatgta cgagcaggcc aaacatgtgc agcccgtata cacggccgca
4021 cttaaagatg aactagtcaa aactgacaag atctacaaga agataaagaa aaggctctta
4081 tgggggtcgg atcttggcac aatgatcagg tgtgccaggg cttttggcgg tctcatggat
4141 agcatgaagg caagttgcat agccctccca tgtagggtag gaatgaacat gaatgaagat
4201 ggtcccatta tatttgacaa acattctaag tataggtatc attatgatgc tgactattcc
4261 aggtgggact caacccagca aaggagcatt ctctcggccg ctatggaagt gatggtgcgg
4321 ttctctgccg aaccagagct ggcacaagtg gttgcagagg acctcctggc acccagccaa
4381 ctagatgttg gcgatttcgt catctcagtc caggagggtc tgccatcagg ggttccatgc
4441 acatcacaat ggaattcaat agcacactgg atccttacct tgagtgcaat ggcagaagtg
4501 tcgggtctct cgccagatgt tgttcaagcc cactcctgtt tctcattcta cggtgatgat
4561 gagatagtca gcactgacat caaccttgat cccatgaagt tgacacagaa actcagagag
4621 tatggcctgg tccccactcg acctgacaaa actgagggtc ccctcgtaat aactgaagac
4681 ctcaccggcc taacgttcct gcgtaggtca gttgcacggg acccagctgg gtggtttggg
4741 aaattggacc aggactcaat cctcagacag ttgtactgga caaggggccc caatcatgag
4801 aacccatatg agagcatggt ccctcattcc cagcgggcca cacagcttat ggcccttctc
4861 ggtgaggctt cactgcatgg cccccagttt tacaagaagg ttagcaagat ggtcattagt
4921 gagatcaaaa gtggtggtct ggaattctat gtgcccagac aagaggccat gttcagatgg
4981 atgagatttt ctgacctcag cacatgggag ggcgatcgca atcttgctcc cgagggtgtg
5041 aatgaagatg gcgtcgaatg acgctgctcc atcgaatgat ggtgctgcca acctcgtacc
5101 agaggccacc aatgaggtta tggcacttga gccggtggtg ggagcctcaa ttgctgctcc
5161 tgtcgtcggc caacaaaata taattgaccc ctggattaga gaaaattttg ttcaggcacc
5221 acagggtgag tttactgttt caccaaggaa ctcacctggt gagatgcttc taaatcttga
5281 attaggccct gagctcaatc cttatctgag tcacttgtcc cgcatgtata acggctatgc
5341 tggtggtatg caggttcagg tggtcctagc tgggaatgcg ttcacagctg gtaaaatcat
5401 ctttgccgcc gtcccaccac attttcctgt tgagaacatt agtgcagccc aaattacaat
5461 gtgcccccat gtaattgttg atgtgagaca gcttgagcca gtgcttttgc ccctccctga
5521 tataaggaat agattctttc attataatca ggaaaacacc cctcggatga gacttgtggc
5581 tatgttgtac acacccctta gagcaaattc tggtgaggat gtgtttacag tgtcttgcag
5641 agttctgacc cgccctgccc ccgactttga gttcacgttc ttggtgccac caactgtgga
5701 gtcaaagact aagcccttta cactccctat tctgactctt ggagaactgt ccaactccag
5761 attccccgct ccgatagata tgttgtacac tgaccctaat gaggcaattg tggtgcaacc
5821 acaaaatggc aggtgcactc tagatggaac acttcaaggg accacccaac tggtacccac
5881 ccaaatttgc tccttcaggg gcacgctaat tagccagacg tcgaggtctg cagattcaac
5941 agattcagcc ccacgggtga ggaaccaccc tctccacgtt cagctgaaga acctcgatgg
6001 gacaccatat gacccaacag atgaggtgcc agcagttttg ggtgccatag atttcaaagg
6061 aactgtgctt ggggtcgcta gtcaaagaaa caccacaggg agctctatag gagcaacccg
6121 cgcccatgaa gtgcacatag ataccacaaa ccctagatat accccaaagc ttggctctgt
6181 gttgatgcat tctgaatcca ctgattttga tgatggacag cctacccgct ttacccccat
6241 tggcatggga gccgatgatt ggcaccaatg ggaattgcct gagtattctg gtcaccttac
6301 tcttaacatg aatttggccc ccgcagttgc ccctgctttc cctggtgagc gcattctctt
6361 cttcagatca gtggtgccat ctgctggtgg ctatggatca ggtcacatag attgtctcat
6421 cccacaggag tgggttcagc atttctacca ggaggccgct ccatcacagt ctgcggtggc
6481 tcttatcaga tatgtcaacc ctgacactgg aagaaacatc tttgaggcaa aactgcatag
6541 agaagggttc atcactgtgg caaattctgg aaacaacccc atagttgtgc ccccaaatgg
6601 ttacttcagg tttgaggcct gggtcaatca attctacaca ctcaccccca tgggaattgg
6661 acaggggcgc agaagggttc aataatggca ggagctttct tagctggatt ggcaggtgac
6721 gccataacaa gtggtgtcgg gtccctaatc aatgctgggg ccaatgcaat taatcaaaag
6781 gtagagtatg attttaataa acagctccaa ttggcatcct tcaaacatga caaggagatg
6841 ttgcagtcac aagtactggc cactaaacag ctccagcagg aaatgatgaa cataaggcaa
6901 ggggtcttgt ccgctggcgg cttttccccc acagatgccg cgagaggtgc tgtgaacgcg
6961 ccgatgacaa aaattttgga ttggaatgga acaaggtact tcgccccaaa tagtatgaag
7021 acaaccagtt attcgggcca gttttccagc aaccctgtac ataggcaacc cactttaccc
7081 cgttctgacc ccccaaaagt caaggttaat agtgattctg ctagtgtgta tagttctgca
7141 tcttttgctc cttcacaatc aacccactca acggctttga ctgcggggtc tagctcatct
7201 aggacaacat cctcttctgc agcttccact ctatctagaa ccagtgactg ggtgagagga
7261 caaaatgaga ggcttagccc gtttatggat ggtgctctcc aaacaacttt tgtcacacca
7321 ccatcgagca aggcttcatc atatgggtcg gtctcaaccg ttcccaaagc tgttttggac
7381 tcctggactc ctatgttcaa tacccatagg cagcctctct tcgctcatgt gcgcaggcga
7441 ggggagtcac agatttagtg aaaagattga ttaggttttc tttctttctt cttttccttt
7501 tcttt
//