Typing tool
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Typing tool
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Complete norovirus genomes
| MW661246 | GII.2 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6710
ORF3: 6710..7489
LOCUS MW661246 7625 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH11-021, complete genome.
ACCESSION MW661246
VERSION MW661246.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7625)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7625)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7625
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH11-021"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: Ottawa"
/collection_date="2011-03-15"
/note="Viral RNA extracted from fecal samples;
genotype: GII.2_GII.P16"
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58357.1"
/translation="MKMASNDANVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQSAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKGGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTVDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEV
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHAAMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..997
/gene="ORF1"
/product="p48"
mat_peptide 998..2095
/gene="ORF1"
/product="NTPase"
mat_peptide 2096..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6710
/gene="ORF2"
CDS 5082..6710
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58358.1"
/translation="MKMASNDAAPSTDGAAGLVPESNSEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
VISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQVQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6710..7489
/gene="ORF3"
CDS 6710..7489
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58359.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctaa cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agtctgcccc gagggacaac tcacaaaagc ccccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 accagtcatt aggtatgagg ttaagggtgg gatctctggc ctgcccgagc tcacaacagt
301 cccccaacca gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg aaaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccccta
601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtattagacc tcaatgactc
661 atggcttaac aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cccctgccta ctgtggatga ctcaaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctctgata ttacttgctg agctctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg aagactacga gttgcaaggg ccagaagacc tcgccgttga
1021 gctcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcttcag cagcatcaac gctcagggct tgcaaagatc ttggtgccta
1141 tggcttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaaccct
1321 agacatggag gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 cgggacgatc aacgccctgc tggctcgaat agcagcggca aggtcactag tacacagggc
1441 caaggaggag ttatctagca ggataagacc agtagttgtt atgatatctg gcaaaccagg
1501 gataggtaaa actcatttgg ccagggaagt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcggactca taccgagaaa cggtgtggac cattgggatg catacaaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctttgcg
1681 catacaagaa ttggctgata cgtgtcccct taccttaaat tgcgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagttataat aattacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcttgttc caggagaatt gacttcctgg tgtacgccga
1861 ggcaccagat gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgcattcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga
1981 caagaatggc aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct
2041 gattgcccgt gcatcaggct tactgcatga gaggatggac gaatttgaac tccaaggccc
2101 cacagttacc accttcaatt tcgatcggaa cagaatcacc gcattcagac aattggctgc
2161 agaaaacaag tatgggttgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggtcaagaac acctctgtac agaccaacaa cgagttggcc ggagccctgc atcacctcaa
2401 acatgcccga atcaggtact atgtcaaatg tgtgcaagaa gcagtttact ctatcataca
2461 aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccaccattag accaaaatga atcagaggct aaggaagagg tccccaagtc
2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaagggct tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg aggtcaaaat ccgtcagagg atcttccgtc ccaccaggaa
2881 acaaaggaag gaagagaggg ccacactagg actagtgact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt
3061 tggttctggt tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca gccatgaaaa ttcagggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggt gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc
3601 acccattcta ggccccgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacacg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgcgatcc
3721 gcgtgttaag ggagggccct ccttgcagca ggtaatgaga gaccagttga aaccattcac
3781 tgaacccagg ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat
3841 caatgttctc gaacaaaccc tggaccctcc acaaaaatgg acgtacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gtaaattggc agaccaagca tcaaaagcaa atctgatgtt
4021 tgaggaaggg aagcacatga caccagtgta tacagcagcc cttaaggacg agctggtcaa
4081 gactgacaaa gtctatggaa agatcaagaa gagattgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat
4201 atcactccca gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca
4321 gagggcagta ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacagata gtcgctgagg atctgctggc ccccagtgtg gtagatgtgg gagactttaa
4441 aatttcaata aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat
4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggac cctgaaaagt tgaccaccaa attgaaggag tacggcctga aaccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ttgaacggac tcacttttct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagttcaat
4801 attgaggcag atgtactgga ctagagggcc aaatcatgaa gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg
4921 accctctttc tacagcaaaa tcagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggacttttac gtgccaaggc aggaacccat gttcaggtgg atgaggttct ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctactgat ggtgcagccg gcctcgtgcc agaaagtaac agtgaggtca
5161 tggctcttga acccgtggct ggtgccgcct tggcagcccc ggtcaccggt caaacaaata
5221 ttatagaccc ttggattaga gcaaattttg tccaggcccc caatggcgaa tttacagtct
5281 ctccccgtaa cgcccctggt gaagtgctac taaatctaga gttgggtcca gaattaaatc
5341 cttatctggc acatttagca agaatgtaca acgggtatgc cggtgggatg gaggtgcagg
5401 tcatgttggc tgggaacgcg ttcacagccg gcaagttggt cttcgccgcc gtgccacctc
5461 acttcccggt tgaaaacctt agtccacagc aaatcaccat gtttcctcat gtgattatag
5521 atgtaaggac cttggaacct gttttattac cacttcctga tgttaggaat aatttcttcc
5581 actataatca gaaagatgat cctaaaatga gaattgtggc tatgctttat acccccctta
5641 ggtcaaatgg ttcaggtgat gatgtgttca cagtttcctg cagggtgttg actagaccct
5701 cccctgattt tgacttcaca tatctggtgc caccaacagt ggaatctaaa acaaaaccat
5761 tcaccctccc aatcctcaca cttggggaac tttccaattc taggttccca gtgtccatag
5821 accagatgta caccagccct aatgaagtca tatcagtgca gtgtcaaaat ggtaggtgca
5881 cattggacgg ggagcttcag gggacaacac aactccaagt cagtggcatt tgtgctttca
5941 agggggaagt gaccgcccat ttgcatgaca atgatcacct atacaatgtc accatcacaa
6001 acttgaatgg gtcccctttt gacccctccg aggacgttcc tgcccctctg ggcgtgcctg
6061 atttccaggg aagggtcttt ggtgtcatct cccaaagaga caaacataat agccctgggc
6121 acaatgaacc agcaaacagg ggacacgacg ctgtggtccc tacttacaca gcacagtaca
6181 ctccaaaatt gggtcaggtt caaattggca catggcagac cgacgatctt acagtcaacc
6241 aaccagttaa attcacccca gttggactca atgacactga acattttaat caatgggtgg
6301 tccccagata cgctggtgcc ctaaacctca acacaaacct tgccccttct gttgctccag
6361 tattcccagg ggagcgcctg cttttcttca gatcatacgt tcccctcaag ggtggttatg
6421 gaaatccagc cattgattgc ctattaccac aagagtgggt gcaacacttc tatcaggagg
6481 ctgccccatc aatgagtgag gtggcccttg tcagatacat taacccggat actggtcggg
6541 cactgtttga ggccaagctc cacagagctg gtttcatgac agtctcgagc aacaccagtg
6601 ccccggtggt tgtgcctgcc aatgggtact tcagatttga ctcttgggtt aatcaattct
6661 attctctcgc ccccatggga actggaaatg ggcgtagaag ggttcaataa tggctggagc
6721 ctttgtagct ggtcttgcag gggacgtgct cagcaatggg ctcagttcat taattaatgc
6781 aggtgctaat gcaataaatc agagggcaga atttgatttt aatcagaaat tacagcaaaa
6841 ttctttcaat catgataagg agatgttgca ggcccagatc caggcaacta agcagctgca
6901 ggcagacatg atggctataa aacagggggt cctgacagct ggcggctttt cccctgctga
6961 tgcagccaga ggtgctgtga acgcgcccat gacacaggcg ctggattgga acggcacaag
7021 gtattgggca ccaggctcta tgaggaccac atcttattct ggaaaattta catcaaccgc
7081 cccagtgagg caggccgact tccagcacac ccaaagccgg ccttcgagtg gttcttctgt
7141 gtcctctttt gctactcagt cttcaaggcc aactctgacc acaaccactg ggtcctcaca
7201 tggcacagcc tcatcaaatt caactcgcag cacaagcctc tcccaatcaa cggtctctag
7261 agctacatct aggactagtg agtgggtcag agatcaaaat agaaatttgg aaccctacat
7321 gcatggtgcc ttacagacgg cctttgtcac cccaccttcc agcagggcgt ctgacgggac
7381 agtctcaacc gtcccaaaag gtgttttgga ctcctggaca cctgcgttca acacccgcag
7441 gcagccgctc tttgcacacc tccgtaagag gggggagtca catgcctagt gaaaaggtga
7501 aaatttgtta agagtaaatt gattttacct tttaaaaaaa aaaaaaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
7621 aaaaa
//