Typing tool
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Typing tool
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Complete norovirus genomes
| MW445537 | GI.3 | |
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| GI.P13 |
ORF1: 1..5399
ORF2: 5383..7017
ORF3: 7017..7664
LOCUS MW445537 7684 bp RNA linear VRL 12-JAN-2021
DEFINITION Norovirus GI isolate 18N239 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MW445537
VERSION MW445537.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7684)
AUTHORS Li,Y.
TITLE Source tracing, variation and entropy analysis of a norovirus
strain of GI.3 GI(P13)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7684)
AUTHORS Li,Y.
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2021) Virus Laboratory for Infectious Diseases,
Xi'an CDC, Xiying Road, Xi'an, Shannxi 710054, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Illumina Msiqe v. MAY-2019
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7684
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="18N239"
/isolation_source="Anal swab"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="19-Oct-2018"
/note="genotype: GI.3[P13]"
gene <1..5399
/gene="ORF1"
CDS <1..5399
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QQL02663.1"
/translation="ASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGETTT
KIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQES
TARAWCDLSKEEKEEIMRNNERLFDAGGVTPSTLPSTFERTDSSSVTDEQQPVTWSSN
GGVDLGINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAIYIG
QGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYASI
TNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVLS
AINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDISS
FIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG
QYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYMNV
LDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMMCG
PPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKIT
EDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGKGV
MKTTTLNRLLIQATALAMERQDEFQLQGVVYNFDEDRVAAFTNLARANGLGLISMATL
GKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQHQA
ISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPILE
GKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTANKEGKNKG
KTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTPPK
NDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEI
FGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVVCG
VHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFWKS
NPQPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVET
VTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAHA
NSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCAL
SEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDGPI
SVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETMVPHTQRK
VQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTG
DRDLLPDYVNDDGV"
mat_peptide <1..1214
/gene="ORF1"
/product="p48"
mat_peptide 1215..2303
/gene="ORF1"
/product="NTPase"
mat_peptide 2304..2903
/gene="ORF1"
/product="p22"
mat_peptide 2904..3323
/gene="ORF1"
/product="VPg"
mat_peptide 3324..3866
/gene="ORF1"
/product="Pro"
mat_peptide 3867..5396
/gene="ORF1"
/product="RdRp"
gene 5383..7017
/gene="ORF2"
CDS 5383..7017
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QQL02664.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFSSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7017..7664
/gene="ORF3"
CDS 7017..7664
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QQL02665.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKALTEIGLSNPNYGSSVSTRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSIAPRYFNIDRLPLFANMRK"
ORIGIN
1 tggcgtctaa cgacgctatt gccgttgctg atgtcagcaa taacaatgct aacaccaaca
61 atgaaaacat aggatctcgc cttatggcaa agatccgtgg gcgtataggc ccacaacgtg
121 gtgaaacaac cacaaagatc aaagatgcca acatggcgct cgacctttta cgccggtcac
181 aaacaccatc cccatgtcgg caaactaatg acagcgcccc caaggctcaa agggaccgtc
241 ccccgcggac cgcttcagag gtaaaaaggg cgctggggtg ggatgctgaa ccagaacacc
301 aagaaagcac agctagggca tggtgtgacc tctcaaaaga ggagaaggaa gagataatgc
361 gtaacaatga gaggcttttt gatgctggag gtgtcactcc atcgacccta cccagcacat
421 ttgagaggac tgattcaagc agtgttactg acgagcaaca acctgtgaca tggtcttcta
481 atggaggggt tgaccttggt atcaatgaat tgaccacagt tcgtggcccg ttttggaata
541 tgtgccccct cccaccacta gaagcccgta atagtggccc tgctaaggaa ccccttatag
601 gtgacatggt cgagttctat gaaggacaca tattccatta tgccatttac atcggacagg
661 gcaagactat tggagtccac tcaccacagg ccgctttttc catacccaga ataaccatcc
721 acccactggt ggcttggtgg cgtgtgtgtt acatccccac tagccaacaa cgccttacct
781 acgaacagct taaggagttg gagaatgaac catggcccta tgcctcaatc accaacaact
841 gttatgagtt ctgctgtaaa gtgatggcac ttgatgatac ctggctccaa agaagactgg
901 ttactagtgg aaaattcaac caccctacac aggactggtc acaggacacc ccagacttcc
961 atcaggattc gaagcttgaa atggtaaggg acgctgtctt gtcggccatc aacggtcttg
1021 tatcacaacc ctttaagaac atcctgtcca aaattaaacc attaaatgtg cttaatcttt
1081 tatcaaactg tgattggacc ttcatgggcg tcgtggaact ggtagtgctc ctggcagaac
1141 tgtttgatgt gttctggacc ccaccagaca tttcaagctt cattgcatcc ttactacctg
1201 attttcatct acaaggccca gaagacctag ccagggattt agtccccctc atattaggtg
1261 gcataggctt agcaattggt tttacgagag acaaaataac aaaagtgatg aagagtgccg
1321 ttgatgggct gcggtcagca acacagctcg gacaatatgg actggagata ttctcaatta
1381 tcaagaaata cttctttgga ggggaccaaa cagaaaagac cctgcgaggc attgaagatg
1441 cggtgataga catggaagtg ttgtccagta ccaatgtgac acaactggtc aaagataaga
1501 agttagccaa agcttacatg aatgtactgg acaatgagga ggaaaaagca agaaagctct
1561 cagtccgtag tgctgaccca catatagtga cctctgtcaa caacttgata tcacgcattt
1621 ctatggcaag atcagctctg gctaaagccc aagctgagtt gacgtcccgc ccacgaccag
1681 tggttataat gatgtgtggt cctcctggta taggaaagac taaggccgct gagcacctag
1741 ctggccgact agctgctgaa atcagacctg gaggtaaagt tggccttgtg ccccgggagt
1801 ccatagacca ttgggatgga tatcatggcg aggacgtcct gctctgggat gactatggca
1861 tgtcaaagat aacagaggat tgtaataagt tacaggccat agctgatact gcaccactgt
1921 cacttaattg tgacagaata gaaaacaaag gcatgcaatt ctcttctgat gcaataatta
1981 taaccaccaa tgcccctggc ccagccccag tcgactttgt caacttaggc cccgtgtgca
2041 gacgagtgga ctttttagtt tactgttctg cacccgagat tgaacaaacg cggagggctc
2101 atccaggtga taccaatgcc atcaaggatc tgttcaaaaa ggacttctca cacttgaaaa
2161 tggaactggc tccacagggc ggctttgata gtcagggcaa cacacctttt gggaagggtg
2221 tcatgaaaac cacaaccctc aataggctat tgatacaggc cacagcatta gccatggagc
2281 gacaagatga attccaactc cagggggtcg tctacaactt tgacgaggat agagtggccg
2341 ctttcaccaa tctagctcga gctaatggcc tggggctcat aagcatggca acattaggca
2401 agaagctgag aagtgttaag tccatggaag gcctgcgcaa tgcactactg ggatacaaga
2461 ttggagagtg cgatataatc tggaacacca gggtgtattc agttaagagc gacgggagca
2521 atgtcacaat taaagaaaag caggcaccat cctcacccca gcatcaagct atttccacag
2581 ctaccctggc gctctctaga ctgcgggctg ctagagccct tgcgtacgct tcctgtttac
2641 aaagtgcagt gttgtcaata cttcaggttg ccggctctgc cttagtggtg agcagggctg
2701 taaaacgcat gtttggcaca cgcaccgaac agcccattct ggagggtaag cataaagaac
2761 acaactgcag agtacaccgt gcagaggccg ctggtcatgg ccccattggc catgatggaa
2821 tcattgaacg ttatggtctg tgtgagagtg agcaggaagg agaagatgac caaactgtgg
2881 agttgcccac tgctaacaaa gaaggcaaga acaaaggcaa aaccaaaaag ggccgcggac
2941 ggaaatccaa cttcaatgca ttctctaggc gtggacttag tgatgaggaa tacgaggagt
3001 acaagaaagt aagagaagag aagggtggca actacagcat acaagagtac cttgaggacc
3061 gccaacgcta tgaagaagaa ctcgctgagg tacaagctgg tggagatggt ggaatcggcg
3121 aaactgaagc tgagatccgc caccgtgttt tctataaatc aaagtctggc ttgagaaaac
3181 aacggcaaga ggagcgccgc cagttaggcc tcgtgagcgg tactgaaatc cgcaaacgca
3241 aacccataga ctggactccc cccaaaaatg attggtcaga ggacactaga actgttaatt
3301 atgatgagca catcagcttt gaagcccccc cttcaatctg gagtagagta gttaaatttg
3361 gcagtggctg gggtttttgg gtgagttcaa cagtgttcat caccacaaca cacgttatac
3421 cacctggtgc taaagagatc tttggtgaga acattagcaa tattgccatc catagggttg
3481 gcgaattcac ccaattccgt ttctccaaga aaatgaggcc tgacctctct ggcatggtcc
3541 tggaagaggg atgccctgag ggcacagtgt gcaccataat gataaaaaga gactctggag
3601 aactgttgcc gctggctgtt cgtatgggag cagtggcctc aatgaagatc caagggaagc
3661 tcatgcatgg acagtcaggg atgttgctca ccggtgctaa tgccaagggc atggaccttg
3721 gtaccatacc tggggattgt ggagcgccct atatccataa aagagggaat gactgggtgg
3781 tttgtggggt gcatgcagca gccacgaaat caggcaatac cgtggtgtgc gccatacaag
3841 gtggtgaagg tgaagccacg ctagagggtg gcgatcaaaa taagggtcat tatgcaggac
3901 acccaatact aagatatggt agtggccctt cattgtcaac taaaacaaag ttttggaaat
3961 caaaccccca acctctaccc cctggtacat atgaaccagc ctacctcggt ggcaaagacc
4021 ccagggttga aggtggtcca tctttacagc aagtgttgcg agaccagcta aaaccatttg
4081 ctgaacctcg tggcaggttg cctgaagcag gattgctaga agctgcggtt gaaactgtca
4141 ccaatgcaat tgaacaggtc atggacacac ctgtggcatg gagttacagc gacgcctgca
4201 tgtccttgga caaaacaacc agttctggct accctcatca caaaaggaag aatgatgact
4261 ggaacgggag ttcatttgta agagaattgg gagaccaggc agcgcatgct aatagcatgt
4321 atgagcttgg caaatctatg aaaccagtgt acacagcagc actcaaggat gagcttgtta
4381 agccagacaa ggtgtacaat aaaattaaga aaaggctact ctggggggcg gacctcggca
4441 ccgtcatacg tgccgctagg gcttttgggc cattttgtga agcaataaag ccccatgtga
4501 ttaagttgcc cattaaagtg ggcatgaatg ccatagaaga tggaccccta atttatgcag
4561 aacactccaa atacaagtac cactttgatg ctgattacac agcatgggac tcaacacaaa
4621 acagggagat tatgatggag tcctttaaca ttatgtgtaa actcaccgct aatccctccc
4681 tggccgcagt ggtggcacag gacctgctct ctccttctga gatggatgtc ggtgattatg
4741 tgatcagtgt caaagatggt ctaccatctg gctttccatg cacctcacaa gtgaacagta
4801 tcaaccattg gatctacact ttgtgtgcct tatcagaggt tactggtttg gctcctgatg
4861 taatacagtc acagtcttac ttttcatttt atggtgatga tgaaatagtc tcaacagata
4921 ttgaatttga ttcaaacaga ctaacacagg tgctaaaaga gtatggttta aaacccacaa
4981 gacctgataa aactgatggt ccgatcagtg taaggcaaca ggttgatggc ttggttttcc
5041 ttcggcgcac catctcgaag gatgccatcg ggtaccaggg tcggcttgat cgcaattcca
5101 ttgagagaca gctctggtgg acccgagggc ccaatcatga tgatccattt gaaaccatgg
5161 tcccacacac acagaggaag gtccaactaa tatccctatt aggtgaggcc gcactccatg
5221 gtgagaaatt ttatagaaag atagccagta gggtgatcca ggaggttaaa gaaggaggat
5281 tggaaattta catccctggg tggcaggcca tgttccgctg gatgcgattc catgatttga
5341 gtttgtggac aggagaccgc gatctcctgc ccgattatgt aaatgatgat ggcgtctaag
5401 gacgccccaa caaacatgga tggcaccagt ggtgccggcc agctggtacc agaggcaaat
5461 acagctgagc ctatatcaat ggagccagtg gctggggcag cgacagctgc cgcaaccgct
5521 ggccaagtta atatgattga cccctggatt atgaataatt atgtgcaagc cccacaaggt
5581 gaattcacca tatcaccaaa caacacacca ggtgatattc tatttgattt acaattaggc
5641 cctcacctca acccctttct atcccatttg gctcaaatgt acaatgggtg ggtaggtaac
5701 atgaaagtga aagtcctatt ggcaggtaat gctttcacgg caggaaaaat tattattagt
5761 tgtatacccc ctggctttgt ctcacagaat atatctatag cccaagctac aatgttcccc
5821 cacgttatag ctgatgtcag ggtcctggag cccattgagg tcccattgga ggatgtgagg
5881 aatgtgttat tccacaataa tgataacaca ccaaccatga gactggtatg catgctctac
5941 acccccttgc gtgccagcgg aagctcatct gggacagacc cctttgtgat tgctgggcgt
6001 gtgttgacct gccctagccc tgattttagc ttcttatttt tagtgcctcc taatgtagaa
6061 caaaagacta aaccttttag tgttccagat ctcccactca atgttctatc aaattcaagg
6121 gtgccgtcac tgataaaatt catgatggtg tcacaggacc atggacagat ggtgcaattt
6181 cagaatggca gggtcacact ggatggacag ctccagggca ccacaccaac atcggccagc
6241 cagctctgca agatgcgggg gacggtttac catgcctccg gtggtcaagg gctcaattta
6301 actgagattg atggcactcc ctatcatgca tttgaaagcc cagcccccat tggtttccct
6361 gacataggag acagtgattg gcatattaac gcttcacccg ccaccgcttt cagcagtggc
6421 gaaagcgtca aaagactaga tatggaacag ggctcttcat ttgccccaca tttgggtact
6481 gtacactata ctaatgccag ctatgaagct aacactgacc tgatctgctc attggagtgg
6541 ctgtccccgc ctagcggagg cactccaaac aaggtcaacc cttgggccat tccacggtat
6601 ggttcaactt taactgaagc tgctcagcta gcaccaccaa tttacccccc tggatttgga
6661 gaagctatag ttttctttat gtcagatttt cctatagcaa atggtcaaga tgggttaaga
6721 gtgccctgca ctatacccca agaatttgta acccattttg tcaatgaaca agcaccaacc
6781 cgtggggaag ctgccctcct tcattatgtt gaccccgaca cacaccgcaa tttgggtgag
6841 tttaagttat accctgaagg atttatgact tgtgtgccaa attctagtgg tagtggcccc
6901 caaacgctgc ctatcaatgg agtctttact tttgtctctt gggtttcccg tttctatcaa
6961 ttaaagcctg tgggaacgac cggaccggtt cgtaggctag gaatcaggag atcataatgg
7021 cccaggcaat atttggagca atagctgcga cggctgctgg tagcgctgtg ggtgcaggca
7081 ttcaggctgg tactgaggcc gcactccaac atcagcggtt ccagcaggat ctaacgttgc
7141 agagtaacac tttcaaacat gacaaagaaa tgctagggct acaggttggt gcctccactg
7201 ctcttttgca aaacagcctc aacactcgct acaacatgct cacaaatgct ggtctctcgt
7261 cctcagatgc agcacgcgtg gtggttggcg cgccagctac acgtgttgtt gactggaacg
7321 gcaccagggt gtcagcacca caatctacag ctaccacgtt gaggtctggt gggttcatga
7381 caatcccaac tctgtacaag ggcaaacaac agcagaaagc tctaactgaa attggcttat
7441 ctaacccaaa ttatggttca tctgtgtcta ctagggtcgc tgattgggtt tcctctcaaa
7501 attcttctcg ctcatccttg ggcccgtatc accccagtgc tttgcagaca acatgggtga
7561 ccccacccgg ttctagttct acttctacta tttcttctgt ttctattgca cctagatatt
7621 ttaatattga taggttgcct ctattcgcaa atatgaggaa ataattttgt aatatgaaat
7681 gtgg
//