Typing tool
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Typing tool
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Complete norovirus genomes
| MW305742 | GII.17 | |
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| GII.P13 |
ORF1: 1..805
ORF2: 786..2411
ORF3: 2411..3190
LOCUS MW305742 3240 bp RNA linear VRL 18-JUL-2024
DEFINITION Norovirus GII isolate PNV004409 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MW305742
VERSION MW305742.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3240)
AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P.,
Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y.,
Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N.,
Ushijima,H. and Parra,G.I.
TITLE Genome-wide analyses of human noroviruses provide insights on
evolutionary dynamics and evidence of coexisting viral populations
evolving under recombination constraints
JOURNAL PLoS Pathog 17 (7), e1009744 (2021)
PUBMED 34255807
REFERENCE 2 (bases 1 to 3240)
AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P.,
Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E.,
Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H.,
Green,K.Y. and Parra,G.I.
TITLE Direct Submission
JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug
Administration, 10903 New Hampshire Avenue, Silver Spring, MD
20993, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: High-performance Integrated Virtual
Environment (HIVE) v. 2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3240
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="PNV004409"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Peru"
/collection_date="02-Mar-2008"
/note="genotype: GII.17"
gene <1..805
/gene="ORF1"
CDS <1..805
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QPJ59560.1"
/translation="SRWDSTQQRAVLASALEIMVRFSAEPQLAQIVAEDLLSPSVVDV
GDFKITINEGLPSGVPCTSQWNSISHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDE
IVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWF
GKLDQSSILRQLYWTKGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKL
VISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..802
/gene="ORF1"
/product="RdRp"
gene 786..2411
/gene="ORF2"
CDS 786..2411
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QPJ59561.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAALAAAVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNRPSERMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKISADVQSSHQDRWHMQLTNLNGTPFDPTDDVPAPLGTPDFTGLLF
GVASQRNVGGTGNNTTRAHEVVIATTSTQFVPKLGSINFGSESDDFQVGPPTKFTPVG
IKVETGHPFRQWDLPNYSGALTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGVSEGII
DCLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPL
VVPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2411..3190
/gene="ORF3"
CDS 2411..3190
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QPJ59562.1"
/translation="MAGAFIAGLAGDMLTSAVGSLANAGANAITQKVDFENNKQLQAA
SFQHDKDMLRAQVDATKQLQAEMIAIKQGILTAGGFSPADAARGAVGAPMTKVLDWSG
TRYWAPNSTKTTSYSGQFTSTPVHTPNFNSKPRPPAKTQPSSSSSGSVYSLSTQSTSL
PGPSSSGSSVSSVSIQSTKLSSASSMSRIADWVNQQRSLSPYMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ctccaggtgg gattccacac aacaacgggc ggttcttgca tcagcacttg aaatcatggt
61 gagattttct gctgagccac aattggcgca gatagtggct gaggacctgc tttcaccaag
121 tgtggttgat gtgggtgatt tcaaaattac aatcaatgag ggccttccat ccggcgtgcc
181 ttgcacgtcc cagtggaact caatctccca ctggttgctc acattgtgtg ccttatctga
241 agtgacagga ctaggtcctg acatcataca ggccaactcc atgtactctt tctatggtga
301 tgatgaaatt gtgagcactg acataaaatt ggacccagaa aagttaactg caaagctcag
361 agagtatggc ctcaagccca ctcgtcctga caaaactgaa gggccattgg tgattagtga
421 agacttgaac gggttgacat tccttcgccg cactgtgacc cgagatccag caggctggtt
481 tggaaaatta gatcaaagct ctatcctcag gcaattgtat tggacaaaag gacccaacca
541 tgaagacccc agtgaaacca tgataccaca tgcacagagg cccgtacaac tcatggcact
601 actaggagaa tcctccctac atggaccctc attttacagc aaagttagta aactggttat
661 atctgaactt aaggagggag gaatggattt ttatgtgccc agacaagagt caatgttcag
721 atggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg ctcccagttt
781 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gcgggcctcg
841 tcccagagat caacaccgag acccttcccc tagaaccagt ggctggtgca gctcttgctg
901 cggctgtcac tggtcaaaat aatataattg atccctggat tagaacaaat tttgtacaag
961 cacccaatgg ggagttcact gtttcaccta ggaattcccc aggagaaatc ctcctaaatt
1021 tagaattagg tcctgactta aatccttatt tggcacactt atctagaatg tacaatgggt
1081 atgctggtgg agtggaggtc caggttctcc tagcagggaa tgcgttcacc gctggaaaga
1141 tcctcttcgc tgccgtaccg ccaaatttcc cagttgaatt cttaagccct gcccaaatta
1201 ctatgctccc acatttgata gttgacgtca ggactcttga accaattatg atacccctcc
1261 ccgacgtgag aaacaccttc ttccattaca acaataggcc ctctgagcgt atgcgtttgg
1321 tggccatgtt gtacacaccc ctgagatcca atggctcagg tgatgatgtt ttcacagtct
1381 catgtagagt gttaactaga cccactccag attttgaatt cacctaccta gttccaccct
1441 cagtagagtc taagacaaag cctttctctc ttcccatctt aaccatctct gaattgacta
1501 attcaaggtt tccagcaccc attgattcat tgtttaccgc ccaaaataac aatcttaatg
1561 tccaatgtca aaatggtcgg tgcacactag atggtgagtt gcagggaacc acccagctgc
1621 tcccaactgg aatatgtgcc ttcagaggga aaatatcagc agatgtgcaa agcagccacc
1681 aagataggtg gcacatgcag ttgacaaatc tcaatggcac cccatttgat ccaacagatg
1741 atgtcccagc tccgcttggc actcctgact tcacaggtct actgtttgga gttgcaagcc
1801 aaagaaatgt tggtggaaca ggtaacaaca ctaccagagc ccacgaggta gtaatagcaa
1861 caactagcac acaatttgtg ccaaaattgg gttctattaa ttttgggagt gaaagtgacg
1921 attttcaagt gggcccacca accaaattca caccagttgg gatcaaagtt gaaaccgggc
1981 atcctttcag acaatgggac ctacctaact attctggagc actgaccctc aacatgaacc
2041 ttgccccacc tgttgcccca aacttcccag gtgagcagct gctcttcttt agatcaaatg
2101 ttccttgtgc tggtggtgtc agtgagggta ttattgactg cctgctgcct caagagtgga
2161 tacaacattt ctatcaggaa tccgctccat cccaatcaga tgtggcactg atcagatatg
2221 tcaaccctga cacgggccgc actctctttg aggcaaagct ccacaggact ggttacatta
2281 ctgttgctca ctctggtgat tatcctcttg ttgttccttc taatggctat tttagatttg
2341 attcctgggt aaatcaattt tactcactcg cccccatggg aactgggaat gggcgcagga
2401 gagtgcagta atggcaggag cttttatagc aggtcttgca ggtgacatgc tcacctctgc
2461 tgtaggctca ctggcgaatg ccggagcaaa tgccataaca cagaaagttg actttgaaaa
2521 caacaaacaa cttcaagcag cctcctttca acatgacaaa gatatgctcc gcgcacaagt
2581 ggatgcaact aagcagctgc aggcagaaat gattgccatc aaacagggga tcttgaccgc
2641 tggcggtttc tcccctgctg acgcagcaag aggggctgta ggagcaccca tgaccaaagt
2701 gcttgactgg tctggcacac gctattgggc accaaattct accaaaacaa caagttactc
2761 cgggcagttc acatcaacgc ctgtgcacac accaaatttt aacagtaaac ccaggcctcc
2821 tgccaaaacc cagccttctt cttcttcttc tggtagtgtt tatagtcttt caacccaatc
2881 aacttcactc cctggaccct cttcttcggg ttcatctgtt tcttctgtct caatacaatc
2941 aacaaaattg agttcagcct cttctatgag tagaatagca gattgggtta atcaacaaag
3001 gagcctcagc ccttacatga gcggggccct taatatttct catgtgacac ctccatcaag
3061 cagagcttca agttcgggaa cagtctcaac tgtgcccaaa gaagttttgg actcctggac
3121 atctgcattt aatacacgca gacagccgct cttcgcacac ctcagagtga ggggggagtc
3181 acgtgtttag tgaaaagaat caattagttt taattgggtt aaattttaat tggatctttt
//