Typing tool
|
Complete norovirus genomes
MW305742 | GII.17 | ||
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GII.P13 |
ORF1: 1..805 ORF2: 786..2411 ORF3: 2411..3190LOCUS MW305742 3240 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate PNV004409 nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305742 VERSION MW305742.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3240) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 3240) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3240 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="PNV004409" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="02-Mar-2008" /note="genotype: GII.17" gene <1..805 /gene="ORF1" CDS <1..805 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ59560.1" /translation="SRWDSTQQRAVLASALEIMVRFSAEPQLAQIVAEDLLSPSVVDV GDFKITINEGLPSGVPCTSQWNSISHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDE IVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWF GKLDQSSILRQLYWTKGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKL VISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..802 /gene="ORF1" /product="RdRp" gene 786..2411 /gene="ORF2" CDS 786..2411 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59561.1" /translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAALAAAVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNRPSERMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT QLLPTGICAFRGKISADVQSSHQDRWHMQLTNLNGTPFDPTDDVPAPLGTPDFTGLLF GVASQRNVGGTGNNTTRAHEVVIATTSTQFVPKLGSINFGSESDDFQVGPPTKFTPVG IKVETGHPFRQWDLPNYSGALTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGVSEGII DCLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPL VVPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 2411..3190 /gene="ORF3" CDS 2411..3190 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59562.1" /translation="MAGAFIAGLAGDMLTSAVGSLANAGANAITQKVDFENNKQLQAA SFQHDKDMLRAQVDATKQLQAEMIAIKQGILTAGGFSPADAARGAVGAPMTKVLDWSG TRYWAPNSTKTTSYSGQFTSTPVHTPNFNSKPRPPAKTQPSSSSSGSVYSLSTQSTSL PGPSSSGSSVSSVSIQSTKLSSASSMSRIADWVNQQRSLSPYMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV" ORIGIN 1 ctccaggtgg gattccacac aacaacgggc ggttcttgca tcagcacttg aaatcatggt 61 gagattttct gctgagccac aattggcgca gatagtggct gaggacctgc tttcaccaag 121 tgtggttgat gtgggtgatt tcaaaattac aatcaatgag ggccttccat ccggcgtgcc 181 ttgcacgtcc cagtggaact caatctccca ctggttgctc acattgtgtg ccttatctga 241 agtgacagga ctaggtcctg acatcataca ggccaactcc atgtactctt tctatggtga 301 tgatgaaatt gtgagcactg acataaaatt ggacccagaa aagttaactg caaagctcag 361 agagtatggc ctcaagccca ctcgtcctga caaaactgaa gggccattgg tgattagtga 421 agacttgaac gggttgacat tccttcgccg cactgtgacc cgagatccag caggctggtt 481 tggaaaatta gatcaaagct ctatcctcag gcaattgtat tggacaaaag gacccaacca 541 tgaagacccc agtgaaacca tgataccaca tgcacagagg cccgtacaac tcatggcact 601 actaggagaa tcctccctac atggaccctc attttacagc aaagttagta aactggttat 661 atctgaactt aaggagggag gaatggattt ttatgtgccc agacaagagt caatgttcag 721 atggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg ctcccagttt 781 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gcgggcctcg 841 tcccagagat caacaccgag acccttcccc tagaaccagt ggctggtgca gctcttgctg 901 cggctgtcac tggtcaaaat aatataattg atccctggat tagaacaaat tttgtacaag 961 cacccaatgg ggagttcact gtttcaccta ggaattcccc aggagaaatc ctcctaaatt 1021 tagaattagg tcctgactta aatccttatt tggcacactt atctagaatg tacaatgggt 1081 atgctggtgg agtggaggtc caggttctcc tagcagggaa tgcgttcacc gctggaaaga 1141 tcctcttcgc tgccgtaccg ccaaatttcc cagttgaatt cttaagccct gcccaaatta 1201 ctatgctccc acatttgata gttgacgtca ggactcttga accaattatg atacccctcc 1261 ccgacgtgag aaacaccttc ttccattaca acaataggcc ctctgagcgt atgcgtttgg 1321 tggccatgtt gtacacaccc ctgagatcca atggctcagg tgatgatgtt ttcacagtct 1381 catgtagagt gttaactaga cccactccag attttgaatt cacctaccta gttccaccct 1441 cagtagagtc taagacaaag cctttctctc ttcccatctt aaccatctct gaattgacta 1501 attcaaggtt tccagcaccc attgattcat tgtttaccgc ccaaaataac aatcttaatg 1561 tccaatgtca aaatggtcgg tgcacactag atggtgagtt gcagggaacc acccagctgc 1621 tcccaactgg aatatgtgcc ttcagaggga aaatatcagc agatgtgcaa agcagccacc 1681 aagataggtg gcacatgcag ttgacaaatc tcaatggcac cccatttgat ccaacagatg 1741 atgtcccagc tccgcttggc actcctgact tcacaggtct actgtttgga gttgcaagcc 1801 aaagaaatgt tggtggaaca ggtaacaaca ctaccagagc ccacgaggta gtaatagcaa 1861 caactagcac acaatttgtg ccaaaattgg gttctattaa ttttgggagt gaaagtgacg 1921 attttcaagt gggcccacca accaaattca caccagttgg gatcaaagtt gaaaccgggc 1981 atcctttcag acaatgggac ctacctaact attctggagc actgaccctc aacatgaacc 2041 ttgccccacc tgttgcccca aacttcccag gtgagcagct gctcttcttt agatcaaatg 2101 ttccttgtgc tggtggtgtc agtgagggta ttattgactg cctgctgcct caagagtgga 2161 tacaacattt ctatcaggaa tccgctccat cccaatcaga tgtggcactg atcagatatg 2221 tcaaccctga cacgggccgc actctctttg aggcaaagct ccacaggact ggttacatta 2281 ctgttgctca ctctggtgat tatcctcttg ttgttccttc taatggctat tttagatttg 2341 attcctgggt aaatcaattt tactcactcg cccccatggg aactgggaat gggcgcagga 2401 gagtgcagta atggcaggag cttttatagc aggtcttgca ggtgacatgc tcacctctgc 2461 tgtaggctca ctggcgaatg ccggagcaaa tgccataaca cagaaagttg actttgaaaa 2521 caacaaacaa cttcaagcag cctcctttca acatgacaaa gatatgctcc gcgcacaagt 2581 ggatgcaact aagcagctgc aggcagaaat gattgccatc aaacagggga tcttgaccgc 2641 tggcggtttc tcccctgctg acgcagcaag aggggctgta ggagcaccca tgaccaaagt 2701 gcttgactgg tctggcacac gctattgggc accaaattct accaaaacaa caagttactc 2761 cgggcagttc acatcaacgc ctgtgcacac accaaatttt aacagtaaac ccaggcctcc 2821 tgccaaaacc cagccttctt cttcttcttc tggtagtgtt tatagtcttt caacccaatc 2881 aacttcactc cctggaccct cttcttcggg ttcatctgtt tcttctgtct caatacaatc 2941 aacaaaattg agttcagcct cttctatgag tagaatagca gattgggtta atcaacaaag 3001 gagcctcagc ccttacatga gcggggccct taatatttct catgtgacac ctccatcaag 3061 cagagcttca agttcgggaa cagtctcaac tgtgcccaaa gaagttttgg actcctggac 3121 atctgcattt aatacacgca gacagccgct cttcgcacac ctcagagtga ggggggagtc 3181 acgtgtttag tgaaaagaat caattagttt taattgggtt aaattttaat tggatctttt //