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Typing tool
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Complete norovirus genomes
MW305703 | GII.12 | ![]() |
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GII.P33 |
ORF1: 1..5075 ORF2: 5056..6663 ORF3: 6663..7442LOCUS MW305703 7488 bp RNA linear VRL 18-JUL-2024 DEFINITION Norovirus GII isolate CMH-N006-11-c1 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305703 VERSION MW305703.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7488) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7488) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7488 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="CMH-N006-11-c1" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Thailand" /collection_date="23-Jan-2011" /note="genotype: GII.12[GII.P33]" gene <1..5075 /gene="ORF1" CDS <1..5075 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59445.1" /translation="AAAISNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPPRETTQK QKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKEGVSGLPELSTVRQPDETNSAFSVP PLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPL SLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR TTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLRPLNILNI LASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKDEANELA MVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLSTKSASPDIVG TINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDLAKKVAATLT GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFPGQP DMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVARASGLLHERLD EYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNVKTVSELKQALKN IAIRRCQIVYSGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHHLRCARIRYYVK CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKDGCPKPKDEEEF VISSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ DRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN PDDFKPKGRLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV IPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR PTGELMPLAARMGTHATMRIQGRAVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR GNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILGPGNAPKLST KTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSV LEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNEHWNGESFTGKL ADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARA FGGLMDEFKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAILA AALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHW LLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRP DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPAETM VPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFS DLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2600 /gene="ORF1" /product="p22" mat_peptide 2601..2999 /gene="ORF1" /product="VPg" mat_peptide 3000..3542 /gene="ORF1" /product="Pro" mat_peptide 3543..5072 /gene="ORF1" /product="RdRp" gene 5056..6663 /gene="ORF2" CDS 5056..6663 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59446.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6663..7442 /gene="ORF3" CDS 6663..7442 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59447.1" /translation="MAGAFIAGLAGDIVTSGIGSLVNAGANAINQKVDFENSKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL ISGSSNPSSLVRSSSSISSQSASSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQV" ORIGIN 1 ccgctgctgc tatcagcaac aacgacatcg caaaatcttc aagtgacgga gtactaagta 61 gtatggctgt cacttttaaa cgagccctcg gggcccggcc taaacagccg cccccgaggg 121 aaacaacaca aaaacaaaaa cctccacgac cgcccacccc ggagttaatc aaaaagattc 181 cacctccccc gcccaacggg gaggacgata tagtggtatc ctacagtgcc aaagaggggg 241 tctccggcct gcctgagcta tccaccgtca ggcagccgga tgagacaaac tcagcattta 301 gtgtcccccc actcaaccag agggaaaaca gggatgccaa agaaccgctg cctggcacca 361 tattggaaat gtgggatgga gagatctacc actacggctt gtacgtggag cggggtttgg 421 tgcttggggt gcacaaacca ccagcggcta ttagcctcgc aaaggttgaa ctaacaccgc 481 tgtctctgta ctggagacca gtgtacaccc ctcagtacct catatccccg gaaacgctca 541 aaaagctaca tggagagaca ttcccttata cggcctttga taacaactgt tacgccttct 601 gttgttgggt cttggatcta aacgactctt ggctcagcag gaggatgatt cagagaacaa 661 ctggcttctt cagaccctac caggactgga acaggaaacc tctccccact atggatgatt 721 ccaaattgaa aaaggtggct aatatagtcc tgtgtgcttt gtcatcacta ttcaccaggc 781 ccattaagga cataatagga aaactaaggc ccttaaacat actcaacata ctagcttcct 841 gcgactggac tttcgcagga gtggtggaat ccctaattct ccttgcagaa ctcttcggag 901 ttttctggac acccccagat gtgtctgcga tgatcgcccc cttactaggt gactacgaac 961 tacagggacc tgaagatctc gctgtagaac tcgtaccagt agtaatgggg gggataggtt 1021 tggttctagg tttcaccaag gagaagattg gcaagatgct gtcatccgcc gcgtccaccc 1081 tcagagcttg taaagacctt ggagcatatg ggttagaaat cctgaagttg gtcatgaaat 1141 ggttcttccc gaagaaagac gaggcaaatg aacttgcaat ggtgagatcc attgaggacg 1201 cagtgctgga cctcgaagca attgaaaaca atcacatgac caccctgctc aaagacaaag 1261 acagtttggc aacctacatg aagaccctgg atcttgaaga ggagaaagct aggaaacttt 1321 ccaccaaatc cgcttctcct gatattgtgg gcacaatcaa ttcacttctg gcacggattg 1381 cagctgcccg ttccctggtg caccgggcaa aagaagagct ttcaagtagg ccaagacccg 1441 ttgtcgttat gatatcagga aagccaggga tagggaagac ccatcttgcc agagatttgg 1501 caaagaaagt tgcagccacc ctcacaggag accagagggt gggcctcatc ccacggaatg 1561 gtgtcgacca ttgggatgca tacaaaggtg agagagtcgt cctttgggat gactatggaa 1621 tgagtaaccc cattcatgac gcccttaggc tacaagaact tgctgacact tgccccctaa 1681 cattaaattg tgatagaatt gagaacaaag gaaaggtttt tgacagtgat gccataatta 1741 ttacaactaa tttggctaac ccggcaccac tggactatgt taactttgaa gcgtgttcga 1801 ggcgtatcga cttccttgtg tacgctgatg cccccgacgt tgaaaaggca aaacgcgact 1861 tcccagggca acctgacatg tggaaggatg cttttagacc tgacttctca cacataaagt 1921 taatgttggc tcctcagggt ggttttgata agaacggcaa caccccacat ggaaaaggtg 1981 tcatgaaaac cctcacatct ggctccctcg ttgcccgtgc ttcaggactc ctccacgaaa 2041 gactggacga gtacgagttg caagggccaa cacccacaac cttcaatttc gaccaaaaca 2101 aggtgttcgc ctttaggcag ctcgccgctg aaaataaata cgggctgatg gacaccatga 2161 gagtgggaag ccagctcaag aatgtaaaaa ctgtgtcaga gctcaaacag gcactcaaga 2221 acattgcaat tagaaggtgc cagatagtct acagtggtct cacatactca cttgaatctg 2281 atggcaaagg taatgtaagg gttgagaagg tgcaaagtcc agctgtgcag accaacaatg 2341 agctaactgg cgcactacac catctgaggt gcgctaggat tagatattat gttaagtgtg 2401 ttcaggaagc tttgtattcc atcatccaaa ttgctggggc cgcgtttgtc accacgcgca 2461 ttgcaaagcg catgaacata caaaacctct ggtccagacc acaggtggag gatgaggaag 2521 agaccaccag caaagacggg tgcccaaaac caaaggatga ggaggagttt gtcatctcgt 2581 ctgaagacat caaagtcgaa ggcaagaagg gaaagaacaa gtctggtcgt ggcaagaaac 2641 acacagcctt ttcgagtaaa ggtcttagtg atgaggagta cgatgagtat aaaagaatta 2701 gagaagaaag aaatggtaag tactccatag aagaatacct ccaggacaga gacaagtact 2761 atgaggaggt ggccatagcc agagctactg aagaggactt ctgtgaggaa gaagaagcca 2821 agattcgtca gaggattttc agaccaacaa ggaagcaacg caaggaggag agggcttcac 2881 ttggactggt tacaggctca gaaatcagga aaaggaaccc ggatgacttc aaacccaaag 2941 gaagactgtg ggctgatgat gacaggagtg tcgattacaa tgaaaagctc agctttgagg 3001 cccccccaag catctggtcg agaatagtca actttggatc aggctggggc ttctgggtct 3061 caccaagcct ttttataaca tccacccatg tcatacctca aggggcacaa gaattcttcg 3121 gtgtttccat caaacagatc caaattcaca agtcgggtga attctgccga ctaagattcc 3181 caaaaccaat tagaactgat gtgacaggta tgatcctgga ggagggggcc cctgaaggga 3241 ctgtggccac attgctcata aaaaggccaa ctggagagct gatgccactg gcagctagaa 3301 tgggtaccca tgcaactatg aggatccagg gtcgagctgt cggggggcag atggggatgc 3361 tcctgacggg atccaacgcc aagagcatgg atttgggtac cacaccaggt gactgtggat 3421 gcccatacat atataaaaga ggaaatgact acgtagtcat cggggtccac acagctgccg 3481 cccgcggagg gaacactgtc atctgtgcaa cacaaggaag tgagggcgag gctgtgcttg 3541 aaggtggcga caacaaaggc acctattgtg gcgccccaat cctaggtcca ggaaatgccc 3601 ccaaactcag tactaaaacc aaattctgga ggtcctcaac agcaccactc ccacctggca 3661 catacgaacc agcttacctc ggaggcaaag accccagagt aaaaggtggc ccctcattac 3721 agcaagttat gagagaccaa ctgaaaccat ttacagaacc cagaggtaag ccaccaaagc 3781 ccagtgtact agaagcagcc aaaaagacaa tcattaatgt ccttgagcaa acaatagacc 3841 caccccaaaa atggacgttc gcacaggcgt gcgcatccct cgacaaaaca acctctagtg 3901 gctacccgca ccacgtgcgg aagaatgaac attggaatgg ggaatctttc acaggaaaat 3961 tggctgatca ggcttcaaaa gctaacctga tgtttgagga aggtaaacac atgacaccag 4021 tctacacggg agccctcaag gatgagttag tcaaaaccga taaaatatat ggcaagatca 4081 agaagaggtt gctatggggt tcagatctgg caaccatgat ccgctgcgct cgagcgttcg 4141 gagggttaat ggatgaattc aaggctcact gtgtcacact ccccattagg gtagggatga 4201 acatgaatga ggatggcccc atcatttttg agaaacactc tagatacacc taccattatg 4261 atgcagacta ctctcggtgg gactcaacac agcagagagc tattttagct gcagccctgg 4321 agatcatggt aaaattttcc ccagaaccac acctggccca gatcgttgca gaggatctcc 4381 tatctcccag cgtgatggac gtgggcgatt tcaaaatatc aattactgaa ggactcccct 4441 ctggggtgcc ttgcacctca caatggaatt ctattgctca ttggctcctc acgctttgtg 4501 cactctctga ggtaacagat ttgtctcctg acatcatcca agcaaactca ctcttttctt 4561 tctatggtga cgatgaaatt gtgagcacag acatcaaatt agacccagaa aagttgacag 4621 ctaaactaaa agagtatggt ctcaagccaa cccgtcctga caagactgaa gggcctctgg 4681 tcatttctga ggacttagat ggtctgacct tcttacggag gactgtgacc cgtgacccag 4741 caggttggtt tggaaaattg gaacaaagct caatacttag acagatgtat tggaccaggg 4801 gccccaacca tgaggatccc gctgaaacaa tggtgccaca ctcccaaaga cccatacagt 4861 tgatgtccct attaggtgaa gctgcattac atggcccatc attctacagc aaaatcagca 4921 aattggtcat ctcagagtta aaagaaggtg gcatggactt ttacgtgcca aggcaagagc 4981 caatgtttcg atggatgagg ttctcagact tgagcacgtg ggagggcgat cgcaatctgg 5041 ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgca 5101 gccggtctcg taccagaggt caacaatgag accatggcac ttgaaccggt ggctggggct 5161 tcaatagccg ccccactcac cggtcaaaat aatgttatag acccctggat tagattaaac 5221 tttgtgcagg ctcccaatgg agagtttaca gtttcacccc gcaattcgcc tggggaagtc 5281 ctactaaact tggaattagg ccctgaacta aatccatatt tggcacacct ttccagaatg 5341 tacaatggtt atgcaggtgg agttgaggtg caggtactac tggctgggaa cgcgttcacg 5401 gctggaaaac tggtattcgc cgcagttccc cctcattttc cattagaaaa cataagccct 5461 ggccaaataa ccatgttccc tcatgtaatt attgatgtta ggactttaga accagtccta 5521 ttgcctcttc cagatgttag gaacaatttc tttcactaca atcagcaaaa cgaaccgagg 5581 atgaggcttg tggcaatgct ctataccccc cttaggtcta atggttctgg tgatgatgta 5641 tttactgtct cctgtagagt acttactcga ccctctcctg attttgattt caattatttg 5701 gttcccccta cagttgaatc taaaactaaa cccttcacac tccccatctt gaccataggg 5761 gagttaacca attccagatt ccctgtgcct atagatgaac tctacactag ccccaatgag 5821 agtttggtgg tgcaacccca gaacgggagg tgcgcgctgg atggggagtt gcagggcact 5881 actcagctcc tccccacggc gatctgctcg ttcaggggtc ggattaatca gaaagtgagt 5941 ggagagaacc atgtttggaa tatgcaagtc accaacatta acggaacccc ttttgatcca 6001 acggaggatg tcccagctcc tctaggtaca ccagactttt ctggcaagct ctttggcgtc 6061 ctaagccaga gggaccatga taatgcctgt aggagccatg atgcagtgat tgcaactaat 6121 tctgctaaat ttactccaaa gttgggcgct atacaaattg gcacatggga acaagatgat 6181 gtacacatca accaacccac caaatttact ccagttggct tgtttgaaag tgaaggtttt 6241 aatcagtgga cactccctaa ttattctgga gccttaacac tcaacatggg gttggccccc 6301 cctgtggccc ccacatttcc tggtgagcaa attcttttct ttagatccca cattcctctt 6361 aaaggaggtg tggcagaccc agtcattgat tgtctcttgc cccaagagtg gatccaacac 6421 ctttatcagg agtcagcccc ttcacaaaca gatgtagcac tgatcagatt cacaaatcca 6481 gacacagggc gtgtcctatt tgaagcaaaa ttgcacagga gtggctacat cacagtggcc 6541 aacactggta gcagaccaat tgtggtgcca gctaatggtt acttcaggtt tgactcttgg 6601 gttaatcagt tttattctct cgcccccatg ggaactggga atgggcgcag aagggtgcag 6661 taatggctgg ggctttcata gcaggtcttg ctggtgatat agtcaccagt ggtattggct 6721 cactcgtgaa cgctggggcc aatgcaataa accaaaaagt agactttgaa aacagtaagc 6781 aactacagca ggcatccttc aatcatgaca aagagatgct gcaagctcaa attcaagcca 6841 ccaaacagct acaggctgat atgattgcaa tcagacaagg ggtgttgacc gcgggcggct 6901 tctcccccac tgatgcggca agaggtgcag tcaacgcacc catgacacag gtcttggact 6961 ggaacgggac tagacattgg gcccccggag ccatgaaaac aactgctttc tccggtgggt 7021 tcaccagtgc ttctcatgcc aggaccgttg acctgactag gaagacatca gccacaccag 7081 cctctatgcc tgtctctagg cccagttcta ctgcctctac tgtttccacc cgttctacct 7141 tgattagtgg atcctctaat ccttcttctc tagttaggag ttcttccagt atttcttccc 7201 aatctgcttc ctcatcctct cggactagtg attgggtacg tagccaaaac agagcactgg 7261 aaccttatat gagcggggcg ctgcgtacag cctacgtgac acctccatcc agtagggctt 7321 ctagcaatgg cacagtctca accgtgccaa aagaggtttt ggactcctgg acatctgcat 7381 tcaacacaca cagacaaccg ctgtttgctc atctccgccg gagaggggag tcacaagttt 7441 agtgaaaaga tggtcttttc tttcattcct ttgaaatctc tgtctttt //