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Typing tool
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Complete norovirus genomes
MW305701 | GII.12 | ![]() |
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GII.P12 |
ORF1: 1..5069 ORF2: 5050..6657 ORF3: 6657..7436LOCUS MW305701 7486 bp RNA linear VRL 18-JUL-2024 DEFINITION Norovirus GII isolate CMH-145-05 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305701 VERSION MW305701.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7486) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7486) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7486 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="CMH-145-05" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Thailand" /collection_date="25-Dec-2005" /note="genotype: GII.12[GII.P12]" gene <1..5069 /gene="ORF1" CDS <1..5069 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59439.1" /translation="AAANSNNDTAKSSSDGVLSSMAVTFKRALGARHKQPPPREIPQR PPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDENNTAFSVPPL NQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPLSL FWRPVYTPQYLISPDTLRRLHGETFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQRTT GFFRPYQGWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILNILA SCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMG GIGLVLGFTKERIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMV RSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDIEEEKARKLSTKSASPDIVGTI NALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAKKIAASLTGD QRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIEN KGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDM WKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEY ELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRIGKQLKDVKTMPELKQALKNVT IKSCQIVYGGCTYRLESNGKGDVKVDKVQNATVQTNNELAGALHHLRCARIRYYVKCV QEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVEDTEETASKDGCPKPKDDDEFVV SSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR DKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPD DFKPKGKLWADDDRSVDYNERLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIP QGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPT GELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGN DYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKT KFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLE AAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD QASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG GLMEELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAA LEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLL TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK TEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP HSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL STWEGDRNLAPSFVNEDGVE" mat_peptide <1..959 /gene="ORF1" /product="p48" mat_peptide 960..2057 /gene="ORF1" /product="NTPase" mat_peptide 2058..2594 /gene="ORF1" /product="p22" mat_peptide 2595..2993 /gene="ORF1" /product="VPg" mat_peptide 2994..3536 /gene="ORF1" /product="Pro" mat_peptide 3537..5066 /gene="ORF1" /product="RdRp" gene 5050..6657 /gene="ORF2" CDS 5050..6657 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59440.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDQIYTSPNENLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQHVSGDNHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKIFG ILSQRDHDNACRSHDAVIATNSAKFTPKLGAVQIGTWETDDVHINQPTKFTPVGLFED EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGFITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6657..7436 /gene="ORF3" CDS 6657..7436 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59441.1" /translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQVQATKQLQAEMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTSASHARTVDLTKKTSATPAPTPVSRPSSTASTVSTRSTL VSGSSISSSSARSSSSVSSQPTSSSSRTSEWVRSQNKVLEPYMRGALHTTFVTPPSSR ASSNGTVSTVPKGVLDSWTPAFNTRKQPLFAHLRRRGESQV" ORIGIN 1 ccgctgctgc taacagcaac aacgacaccg caaaatcttc aagtgacgga gtgctttcta 61 gcatggctgt cacttttaaa cgagccctcg gggcgcggca taaacagcct cccccgaggg 121 aaataccaca aagacctcca cgaccaccca ccccagaact ggtcaaaaag atccctcctc 181 ccccacccaa cggggaggac gaactagtgg tttcttacag cgccaaagat ggcgtttctg 241 gtttgcctga gcttaccact gtctggcaac cggatgaaaa caacacggcg ttcagtgttc 301 ccccactcaa ccagagggag aatagggacg ccaaggagcc gctacccgga acaatcctgg 361 aaatgtggga cggggagatc tatcattacg gcctgtatgt ggaacgaggc cttgtacttg 421 gtgtgcacaa accaccagct gccatcagcc tcgccaaggt tgaactaaca ccactctctc 481 tgttttggag accagtgtat acaccacagt atctcatctc tccagacact ctcaggagac 541 tgcatggaga gacgttcccc tacacagcct ttgacaacaa ctgctatgcc ttctgttgtt 601 gggtcctgga cctaaacgac tcgtggttgt gcaggagaat gatccagagg acaactggtt 661 tcttcagacc ttaccaaggc tggaacagga aacccctccc caccatggat gattccaaat 721 tgaagaaggt agccaacata ttcttgtgtg cgctatcttc gctattcact aggcccatca 781 aagacataat aggaaaggtg agaccgctca acatccttaa catcttggcc tcatgtgatt 841 ggacttttgc aggcatagtg gaatctttga tcctcttggc agagctcttt ggagttttct 901 ggacaccccc agatgtgtct gcgatgatcg cccccttact aggtgactac gaactgcagg 961 ggcccgaaga ccttgcagtg gaactcgtac cagtagtgat gggggggatt ggtttggtgc 1021 tgggattcac caaagagagg atcggaaaaa tgctgtcatc tgctgcatcc accttaagag 1081 cttgtaaaga ccttggtgca tacggactgg aaatcctaaa attggtcatg aagtggttct 1141 tcccaaagaa agaggaagca aatgagctgg ctatggtgag gtccattgag gatgcggtgc 1201 tggacctcga agcaattgag aacaatcaca tgactaccct cctcaaagac aaagacagct 1261 tggcaaccta catgagaact cttgacatcg aggaggagaa ggccaggaaa ctttcaacca 1321 aatctgcttc acctgacatc gtgggcacaa tcaacgctct cctagcgaga atcgccgctg 1381 cacgttccct ggtgcatcgg gcgaaagagg aactctctag cagaccaaga cctgttgttg 1441 ttatgatatc aggcaagcca gggataggga aaacccacct tgccagagaa ctggccaaga 1501 aaatcgcagc ttctctcaca ggggaccagc gtgtggggct cattcctcgc aatggcgttg 1561 accactggga tgcatacaag ggagagagag tcgtcctatg ggacgattat gggatgagta 1621 accccatcca cgacgccctc aggttacagg aacttgctga cacctgcccc ctcacgctaa 1681 actgtgatag gattgagaac aaaggcaagg tctttgacag tgatgccata atcatcacca 1741 ctaacctggc caatccagca ccattggact atgtcaactt tgaagcatgc tcgaggcgca 1801 ttgacttcct cgtgtacgca gaagcccctg aggtcgagaa ggcaaagcgt gatttcccag 1861 gtcaacctga catgtggaag aacgcattca gttctgactt ctcgcacata aaactggcgc 1921 tggctccgca aggtggcttc gacaagaatg gaaacacccc acacgggaaa ggcgtcatga 1981 aaaccctcac cactggttcc ctcatcgccc gagcatcagg gctactccat gagaggttag 2041 atgagtatga gctgcagggc ccaaccccca ccacctttaa ctttgaccgc aacaaggtgc 2101 ttgcgttcag acagcttgct gccgaaaaca agtacgggtt gatggacaca atgagaattg 2161 gaaaacagct caaggatgtc aagaccatgc cagagctcaa acaagcactc aagaatgtca 2221 caatcaagag ttgtcagata gtgtatggtg gctgtactta caggcttgag tctaatggca 2281 agggtgatgt gaaagttgac aaagttcaga acgccactgt gcagaccaac aatgaacttg 2341 ccggcgccct acaccatctt aggtgtgcca gaatcagata ttatgtcaag tgtgttcagg 2401 aggccctgta ttccatcatc caaattgctg gagctgcatt tgtaaccacg cgcattgcca 2461 agcgcatgaa catacaagac ctctggtcca agccacaggt ggaggataca gaggagaccg 2521 ccagcaagga tgggtgccca aaacccaagg atgatgacga gttcgttgtc tcatccgatg 2581 acatcaaaac cgagggcaag aaagggaaaa acaagtctgg tcgtggtaag aagcacacag 2641 cattctcaag caaaggtctc agtgatgaag agtacgatga gtacaagaga atcagagaag 2701 aaagaaatgg caaatactcc atagaggaat accttcagga cagagacaag tattatgagg 2761 aggtggccat cgccagggca accgaagagg acttctgtga agaagaagag gccaagatcc 2821 gacaaaggat tttcaggcca acaaggaaac aacgcaaaga ggagagggcc tctctcggtt 2881 tggtcacggg ctctgaaatc aggaagagga acccagacga cttcaagcct aaaggaaagt 2941 tgtgggctga tgacgacagg agtgttgact acaatgagag actcagtttt gaagccccac 3001 caagcatctg gtcgaggata gtcaactttg gttcaggttg gggtttctgg gtttccccca 3061 gcctgttcat aacatcaact catgtcatac cccagggcgc acaggagttc tttggtgttc 3121 ccatcaaaca aattcagata cacaaatcag gtgaattctg tcgtttgagg tttccaaaac 3181 caatcagaac tgacgtgaca ggcatgatct tggaagaagg tgcaccagaa gggaccgtgg 3241 tcacactact catcaagagg ccaactggag aactcatgcc cttggcagcc agaatgggaa 3301 cccatgcaac aatgaaaatt caagggcgca ctgttggagg tcaaatgggc atgctcctaa 3361 caggatccaa cgccaagagt atggatctgg gcaccacacc aggtgactgt ggctgtccct 3421 acatttacaa gagggggaat gactacgtag tcattggagt ccacacagct gccgcccgtg 3481 gaggaaacac tgtcatatgt gccacccagg ggagtgaggg agaagccaca cttgaaggcg 3541 gtgacaacaa ggggacctac tgcggtgcac caatcttagg tccaggaagt gccccaaagc 3601 tcagcaccaa gactaaattc tggagatcat ccacggcacc actcccacct ggtacctatg 3661 agccagccta cctcggcggc aaagacccca gagtcaaggg tggcccttca ttgcaacaag 3721 ttatgaggga ccagctaaaa ccattcactg aacccagggg aaaaccacca aaaccaagtg 3781 tgttagaagc tgccaagaag actattgtca atgtccttga acaaacaatt gatccacctc 3841 aaaaatggtc atttgcgcag gcgtgcgcat cccttgacaa gaccacttcc agcggtcacc 3901 cgcaccatat gcggaaaaac gattgctgga acggggagtc cttcacaggc aaattggcag 3961 accaggcttc caaagccaac ctgatgtacg aagagggaaa gaacatgacc ccagtctaca 4021 caggtgcgct taaggacgag ttggtcaaga ctgataaaat ttatggcaag atcaaaaaga 4081 ggcttctctg gggctcggac ctggcgacca tgatccggtg cgctcgagca ttcgggggcc 4141 tgatggagga actcaaggca cattgtgtca cactacctgt cagagtgggt atgaatatga 4201 atgaggatgg tcctatcatc tttgagaaac actccagata caaataccac tatgatgctg 4261 attactcccg atgggactca acacaacaaa gagccgtgtt ggcagcggcc ttagaaatca 4321 tggtcaagtt ctccccagag ccgcatctgg cccaaaaggt tgcagaagac cttctctctc 4381 ccagcgtgat ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc ccctccgggg 4441 tgccctgcac ctcccaatgg aattccatcg cccactggct cctcactctc tgtgcactct 4501 ctgaggttac aaacctgtcc cctgatatta tccaggccaa ctctctcttt tctttctacg 4561 gtgatgatga aattgtgagc acagacataa aattggatcc agaaaagttg acagcaaaac 4621 tcaaggaata cgggttgaaa ccgacccgcc ccgataagac tgagggaccc cttgttatct 4681 ctgaagacct ggatggccta accttcctgc ggaggaccgt gacccgtgac ccagcaggct 4741 ggtttggaaa gttggaacag agttcaatac tcagacaaat gtattggact aggggcccca 4801 accatgaaga tccatctgaa acaatgatac cacactccca gaggcccata caattgatgt 4861 ctttactggg tgaggctgca ctccacggcc caacattcta cagcaaaatc agcaaactgg 4921 tcattgcaga gttgaaggaa ggtggcatgg atttttacgt gcccagacaa gagccaatgt 4981 tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat ctggctccca 5041 gttttgtgaa tgaagatggc gtcgaatgac gccgctccat ctaatgatgg tgcagccggt 5101 ctcgtaccag aggtcaacaa tgagaccatg gcacttgaac cggtggctgg ggcctcaata 5161 gccgccccac tcaccggtca aaacaatatt atagacccct ggattagatt aaattttgtg 5221 caggctccca atggggagtt cacggtttcg ccccgtaact cgcccgggga agtcctatta 5281 aatttggaat taggccccga actaaatcca tacctagcac acctttctag aatgtataat 5341 ggttacgcag gtggagttga ggtgcaagtg ctactggctg ggaacgcgtt cacagctgga 5401 aaactggtgt ttgccgcagt tccccctcac tttccattag aaaatataag ccctggccag 5461 ataactatgt tccctcatgt aattattgat gttaggactt tagaaccagt tttgttgccc 5521 cttccagatg ttaggaataa tttctttcat tataatcaac aaaatgaacc aaggatgaga 5581 cttgtggcaa tgctttacac tcctcttaga tctaatggtt ctggtgatga tgtgtttact 5641 gtctcttgca gggtgcttac ccgcccttcc cctgattttg actttaacta cttggtcccc 5701 cctaccgttg aatctaaaac taaacccttc acactcccca tcttgaccat tggggagtta 5761 accaactcta ggttccctgt gcccatagat cagatctaca ccagtcccaa tgagaatctg 5821 gtggtgcaac cccaaaatgg gagatgcgcg ctagatgggg agctgcaggg cacgacccag 5881 cttctcccta cggcgatttg ctcattcagg ggccggatca atcagcatgt gagtggagat 5941 aaccatgttt ggaacatgca ggtcaccaac atcaacggga ccccttttga cccaacagag 6001 gatgttccgg ctcccctagg caccccagat ttctctggta agatctttgg catactaagc 6061 cagagggacc atgacaacgc ctgtaggagc catgatgcag taattgcaac caactctgcc 6121 aaatttactc caaaattggg cgctgtacaa attggcacat gggaaacaga tgacgtgcac 6181 atcaaccaac ctaccaaatt cactccagtt ggcttgtttg aagatgaggg tttcaaccag 6241 tggacactcc ccaactactc tggagcttta acacttaaca tggggttggc cccccctgtg 6301 gcccctacct tccctggtga acaaatcctt ttctttagat cccacattcc tcttaaagga 6361 ggtgtggcgg acccagttat tgactgtctc ttgccccaag aatggatcca acatctttac 6421 caagaatcag ccccctcaca atcagatgtg gcattgatta ggtttacaaa tccagacaca 6481 ggacgtgttc tatttgaagc aaaattacac aggagtggtt tcatcacagt ggccaacact 6541 ggcagcagac cgattgtggt gccagctaat ggttatttca ggtttgactc ttgggttaat 6601 caattctatt ctctcgcccc catgggaact ggaaacgggc gcagaagggt gcagtaatgg 6661 ctggagcttt tatagcaggg cttgctggtg acatagtcac caatagcatt ggctcacttg 6721 tgaacgctgg ggctaatgca ataaatcaaa aagtagactt tgaaaacaac aagcaactac 6781 agcaggcttc tttcaatcat gataaagaga tgttgcaagc tcaagtccag gccaccaaac 6841 agctgcaggc tgaaatgatt gcaattagac aaggggtgtt gaccgcgggc ggcttctccc 6901 ctactgatgc agcaagaggt gcagttaatg cacctatgac ccaggtctta gactggaacg 6961 ggaccaggca ttgggccccc ggagccacca aaactactgc tttctccggt gggttcacca 7021 gtgcttccca tgccagaact gtcgacctaa ccaagaagac atcagccaca ccagccccta 7081 cgcctgtttc tagacctagc tctactgcct ctacagtctc cacccgctca acattggtta 7141 gcgggtcttc tatttcttcc tcttcagcta ggagttcttc tagtgtttcc tctcaaccca 7201 cctcctcctc ttctcggacc agcgagtggg tgcgcagcca aaacaaggtg ttggagcctt 7261 acatgagagg ggcgttgcac acaacctttg tgacgcctcc ctctagtagg gcttctagca 7321 atggcacagt ctcaaccgtg ccaaaagggg ttttggactc ctggacacct gcgtttaaca 7381 cccgcaagca gccgctattc gctcatctcc gtcggagagg ggagtcacaa gtttagtgaa 7441 aagatgatct ttattttctt tcctttgaaa attctttttg tctttt //