Typing tool
|
Complete norovirus genomes
MW305698 | GII.14 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6654 ORF3: 6654..7448LOCUS MW305698 7494 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate CMH-047-07 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305698 VERSION MW305698.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7494) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7494) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7494 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="CMH-047-07" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Thailand" /collection_date="14-Mar-2007" /note="genotype: GII.14[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59430.1" /translation="FGSQNSVNDSINATPSNKEEVGAFSNIKVGFKKMLGAVPKGTRA PSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYT VPPLSEREHRSATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER KDEFQLQGSDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKLAL RDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIENNASQTANEVQSALLRLRQARARYY ISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEVNESEKEVAQGRWEIEP KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGTDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG VKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6654 /gene="ORF2" CDS 5044..6654 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59431.1" /translation="MKMASSDATPSDDGAAGLVPEINSEVMALEPVAGASIAAPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN GYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6654..7448 /gene="ORF3" CDS 6654..7448 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59432.1" /translation="MAGAFLAGLAGDVVASSLGSLVGAGANAINQKVEYDFNRQLQEA SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG SRYWAPNSMKTTGYSGTFASQGIKSSPHLSNQTPSAVKSTKPLPSISSSSSVYSSPST APSQSTQSTTLSAGTGSSRSNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 cctttggcag tcaaaactct gtcaatgaca gtatcaacgc caccccttcc aataaggaag 61 aggttggtgc attctccaac atcaaagttg gatttaagaa aatgctgggt gctgtaccca 121 agggcaccag agcacccagc agtggtcaac attgccccac agttaagatc gggcctaaaa 181 cattaacaat tccccctgag cccccaaatg gtgaagacac tgtgcagttt gatgcaaagt 241 cggaaactat aatcgggctg ccggacttga caacggtgca aaacgagcat gaaaacaccc 301 catacaccgt ccccccatta agtgagaggg agcacagatc ggccactgaa ccacttcctg 361 gcacaatatt ggagatgtgg gatggtgaat tttaccacta ctccgtgtat gtcagcgatg 421 gcaaagctct gggggtccac aaaccaccgg ctgctataag cctcgcgacg atagagctca 481 cccctatatc tctctattgg agacccgttt acacccccaa ctatttggtc tccccagaca 541 cattgaaagg cctcgctggt gagaagttcc cctacacggc cttcagtaac aattgttata 601 acttttgttg ttgggtgctt gagctcaacg acacgtggct caacagaaga tgcatttcca 661 gaaccaccgg cttcttcaaa ccttatcaat cttggaacag gaagcccctc ccaaccgttg 721 atgatggaaa gatcaaaaag gtggccaacg cgatcctctg cgcacttggc tcactgttct 781 caaaaccaat caaagatttg ttaggcaaac ttaagccatt gaacctgctg cacttgcttg 841 cgtcatgcga ttggacgttt gcaggtatag tggagacagt catcttaatg gcagaacttt 901 tcaatatctt ctggaccccg ccagatgtct ctaattttat agcctccctg ataggtgatt 961 ttgaattaca agggcctgag gacctggctg tggaactcgt tcctgtggtt atgggtggca 1021 taggaatggt tctcggcttc accgctgaga agataggccg tatgctgtca tccgccgcat 1081 caacactgcg ggcatgcaaa gacctaggga attatgccct tgacattctc aaattggtca 1141 tgaagtggtt cttcccaaag aaggaagaga aagctgagat ggaaaccttg agggcgatcg 1201 aggatgctgt cctagatatg gaagccatag ggaataacca tctcacgacc ctcctcaagg 1261 acaaagacag cctcacggct tttatgaaga ccctggacct agaagaggaa aaagcaagaa 1321 aactgtccac taagtcatct tcaccggaca tcgtcggcac cattaatgcc atactagcta 1381 ggattgctgc tgccagatcc cttctacata aggccaaaga agagatgttt agtaggatca 1441 gaccagtggt cgttatgata tcaggcagac ctggcattgg caaaacccac atggcaagac 1501 atttggctaa gagcatcgcc aacaccatga gtggcgacca gagagtcggg ctcgtcccac 1561 gtaacggtgt cgaccactgg gatgcctaca gaggagagag ggtggtcttg tgggatgact 1621 acggtatggg gagccctgtt aaagatgcct taacactaca ggagctggcc gacacctgtc 1681 cagtcacttt aaattgtgat aggattgaga acaaggggaa gatgttcgac agtgatgtca 1741 tcataatcac aaccaacctg gtcaaccccg cgcccctcga ctatgtgaac ttcgaggcgt 1801 gttccaggag agttgacttc ttggtctatg cagagtcacc agagattgaa aaggtcaaga 1861 gggacttccc tggccaacct gatatgtgga aagaccattt taagccagac ttttctcaca 1921 tcaagctaac tttagccccc cagggcgggt ttgacaagaa tggtaacact ccacacggta 1981 agggtaccat gcggtccctg acccaggggt ccctgactgc aagagttgca ggccttgtcc 2041 atgagaggaa agatgagttc caactccaag gaagcgacct ccaaacatac aattttgaca 2101 ccaacagagt ctccgcattt agaaaactgg ctgcagataa caagtatggt atcatggaaa 2161 cgatgagagt aggtgcggca ctcaaaaatg taaagacctt ggaagatcta aagcttgcat 2221 taagggatgt aaaattcaat gagtgtgaaa taatttacaa gaactctaag tatcgagtct 2281 cttccaatgg taaaggctca gtttctgttg acaaaattga gaacaatgca tcccagaccg 2341 cgaacgaggt acaatcagca cttctcaggc tcagacaagc gagggccaga tattacatca 2401 gctgcttcca agacctcgtc tacactctca tacaggttgc cggagcatca ttcgttgtca 2461 acagaatttc caaaaggttc tgctgggaaa ggtgggtcaa accaaccgag acccaggaag 2521 tgaatgagtc cgaaaaggaa gtggctcaag gtaggtggga aattgagccc aaggacacag 2581 aaccagaagg caagaagggt aaaaacaaga aaggaagggg caagaaacac acagctttct 2641 ctagcaaagg cctgagtgat gaagagtatg acgagttcaa gagaatcagg gaagaaagga 2701 atggaaagta ctccattgag gaatacctgc aagaccggga ccgctattat gaagaagtgg 2761 cagttgcccg ggcaacagag gaggacttct gtgaagagga agaggccaaa ataagacaaa 2821 gaattttccg cccgacaaag aaacaaagga aggaggaaag gggtgtactt ggcttagtca 2881 ccggcacaga catcagaaag aggagaccag acgattttca accaaaaggc aatctatggg 2941 cagatgacac caggagtgtg gactacaatg agagacttga ttttgaagcg cccccaagtg 3001 tctggtcaag aatagtccca ttaggcactg gttggggttt ctgggtttca tccaaccttc 3061 taatcacaac aacacacgtc ctgcctaaag gggttaagga actctttgga gttgaaatca 3121 aacagatcca agttcacaag tctggagagt tttgcaggtt cagattccca agaccaatca 3181 ggccagatgt cacagggctc gtgttggagg aaggcgcccc agaaggcact gtctgttcca 3241 tactcataaa aagacctaca ggtgagatga tccccttggc agtgaggatg ggcacacacg 3301 catccatgaa aatacaaggc aggaccgttg gtggccagat gggaatgctt ctaacaggtg 3361 caaatgcgaa gaacatggat cttggcaccg gccctggtga ctgcggttgt ccctacatct 3421 acaaacgcgg caacgacata gttgtcgcgg gtgtccacac cgcagcagcc cggggaggta 3481 acactgtcat atgcgccact caagggcaag atggggaagc agtccttgag ggaaatgagg 3541 acctcggtac ctactgtggc gccccaattc tgggccctgg taaggcacct aaactcagca 3601 cgaagaccaa gttttggcgc tcatcaccag atgccttgcc gcctggcaca tatgaacctg 3661 cttacctggg aggcaaagac cccagagtgg aaagaggacc ttccctgcag caagtcatga 3721 gagaccagtt gagacccttc acagaaccca ggggaaaacc gcctagacct gcagtcttag 3781 aagaagccaa gaagacagtg atgaatgttt tagaacaaac cattgaccct gcaaaaccgt 3841 ggtcctactc gcaagcatgt gcctcactgg ataaaaccac ttctagtggt agcccccatc 3901 atgtaaagaa aaatgaccac tggaatgggg agtccttcac tggtcccctt gcagatcagg 3961 catccaaagc caacctcatg tatgaacagg ctaaacatgt gcagcccgtg tacacggccg 4021 cgctcaaaga tgagcttgtt aagactgaca agatctacaa aaagataaag aagaggctcc 4081 tatggggatc ggaccttgga acaatgatca ggtgcgccag ggcttttggt ggtctcatgg 4141 acagcatgaa ggcaagctgt atagctcttc catgcagggt aggaatgaac atgaatgaag 4201 atggccctat catatttgac aaacattcta agtataggta ccactatgat gctgactatt 4261 ctaggtggga ctcaacccag caaaggagca ttctttctgc cgctatggaa gtgatggtgc 4321 gattttctgc tgaaccagaa ttggcacaag tggttgcaga ggaccttttg gcgcctagtc 4381 agcttgatgt tggtgatttt atcatctcag ttcaggaggg cctgccatca ggagtcccat 4441 gtacatcaca atggaactca atagcacact ggatcctaac tttgagtgca atggcagaag 4501 tgtcaggtct ctcaccagat gttgtccaag ctcactcttg cttttcattt tatggggacg 4561 atgagatcgt cagcactgac atcaaccttg accccatgaa gttgacacag aaactcaggg 4621 agtacggcct ggtccccacc cgacctgata aaactgaagg tcccctcgtc ataactgaag 4681 acctcaccgg cctgacattc cttcgtaggt cgattgcacg ggacccagct ggatggtttg 4741 gaaaattgga ccaagattca atcctcaggc aactatactg gacaaggggg cctaaccatg 4801 agaacccgta cgagagcatg gtccctcatt cccagcgagc cacacagctt atggctcttc 4861 tcggtgaggc ttcactgcat ggtccccaat tttacaagaa agtcagcaag atggttatta 4921 atgagattaa gagtggtggt ctggaatttt atgtgcccag acaggaggcc atgttcaggt 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgaaggtg 5041 tgaatgaaga tggcgtcgag tgacgctact ccatctgatg atggtgcagc cggcctcgta 5101 ccagagatca acagtgaggt tatggctctt gaacccgtcg ctggggcctc cattgcagcc 5161 cccgtagtcg gccaacagaa tataattgat ccctggatta gaaataattt tgtacaagcc 5221 cctgctggtg aatttacagt ttcccctaga aactctcctg gagaacttct acttgatttg 5281 gaattgggtc ctgaacttaa tccctatctt gcacatttgg ccaggatgta caatgggcat 5341 gcaggaggaa tggaagtgca gatagtactg gctgggaatg cgttcacagc tggtaaaatc 5401 ctatttgctg ccatcccgcc tagcttcccc tatgaaaatt tgtcacccgc tcaattgact 5461 atgtgccccc atgtgatagt ggatgtgaga caattagaac cagtgcttct gccaatgcca 5521 gatataagaa atgttttcta ccactataac cagaacaata gtcccaaact taggcttgta 5581 gctatgcttt atactcctct gagggctaac aactcaggtg atgacgtgtt cacggtgtct 5641 tgccgcgttt taacacgtcc ttctccagat ttccagttca cctttctggt cccacctaca 5701 gttgagtcta aaactaagaa tttcaccctt cccgttctta gagtctcaga gatgacaaat 5761 tcaaggttcc ccgttgtttt ggaccaaatg tatacaagca ggaatgaaaa catcattgtc 5821 caaccccaaa acggcaggtg cacgactgac ggtgagctgc ttggcactac catcttgcag 5881 tctgtgtcta tttgcaattt taaaggaaca atgcaggcaa agctgaatga agaaccacga 5941 taccagttac aactcaccaa cttggatggg tcacccatag atccaacaga tgatatgcct 6001 gcccctcttg gcacaccaga tttccaggcc atgttatatg gcgttgcaag ccaacgctct 6061 tccagagaca atgccaccag ggcacatgat gcacagattg acactgcggg tgacacattc 6121 gccccaaaaa ttggccaggt tcgttttaaa tcaagctcta atgattttga cctacatgac 6181 cctacaaaat tcacacctat tggtgtcaat gtggatgatc agcacccttt tagacagtgg 6241 tccctaccaa actacggtgg tcaccttgcc ctgaacaatc atttagcccc cgctgtgaca 6301 ccactctttc ctggcgagca gattttgttc ttcaggtcat acattccaag cgccggaggc 6361 cacacagacg gtgctatgga ctgcttgctg ccccaagagt gggtagagca cttctaccag 6421 gaagctgccc cttcccaatc tgatatcgca ctggtaaggt tcatcaaccc tgacacagga 6481 agagtgctct ttgaagctaa attgcataaa caaggtttcc tcacaattgc agcatctgga 6541 gatcacccta ttgtgatgcc cactaatggt tactttaggt ttgaagcttg ggtcaaccct 6601 ttctatactc tcgcccccgt gggaactggg tctgggcgca ggaggattca ataatggctg 6661 gagctttcct tgcaggcttg gcaggtgacg ttgtggcttc cagcttgggc tcacttgtgg 6721 gcgctggagc caacgccatc aaccagaaag tggagtatga cttcaacaga cagctccaag 6781 aggcatcttt tagacatgat aaggatatgc tcaaagccca ggttgcagca acagcaggcc 6841 ttcaacaggc catgatagac atcaagcggg aggcattgac cgcaggcggc ttttcccccg 6901 ctgatgctgc aagaggtgca gttagagcgc ctatgacaca gattcttgac tggaatggtt 6961 ctaggtattg ggcccccaac tccatgaaga caactggcta ttcaggtaca tttgcttccc 7021 aaggcattaa aagttccccc cacctgtcta atcaaactcc aagtgctgtt aaatctacca 7081 aacctttacc atctatatct agttcttcta gtgtatatag ttctccttct actgcccctt 7141 cacaatcaac acaatcaaca acgctgtctg caggaacagg gtcctccaga tctaacaccg 7201 tgtccacaaa gacctctaca ctgtcgagga caagtgactg ggtcagaggt caaaatgaga 7261 tgcttggccc gttcatgagt ggtgcactcc aaactgctta tgtcacacca ccatcgagca 7321 gggcctcatc acaagggacg gtctcgaccg tacccaaggc tgttttggac tcctggactc 7381 ccatgttcaa cacccacagg cagcctctct tcgcccactt gcgtaggcga ggggagtcac 7441 agatttagtg aaaaggatga ttagggtttc ttcctttccc cttcttattc tttt //