Typing tool
|
Complete norovirus genomes
MW305677 | GII.7 | ||
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GII.P7 |
ORF1: 1..5032 ORF2: 5013..6635 ORF3: 6635..7408LOCUS MW305677 7464 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate 11389 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305677 VERSION MW305677.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7464) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7464) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7464 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="11389" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan" /collection_date="29-Aug-2012" /note="genotype: GII.7[GII.P7]" gene <1..5032 /gene="ORF1" CDS <1..5032 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ59367.1" /translation="NNATPSNKEEVGALSNIKVGFKKMLGAVPKGTKTPSSGQHCPTV KIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYTVPPLSEREHR PATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELTPISLYWRPVY TPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCISRTTGFFKPY QSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTF AGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVVMGGIGMVL GFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDA VLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGTINAILAR IAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTMSGDQRVGLV PRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCDRIENKGKMFD SDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHFK PDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGND LQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKTALRDVKFNECEI IYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAILRLRQARARYYISCFQDLVYT LIQVAGASFVVSRISRRFCWERWVKPTETQEVNESEKEVAQGRWEIEPKDTEPEGKKG KNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARA TEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLITGSDIRKRRPDDFQPKGNLWADD TRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEIK QIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGEMIPLAVRMGT HASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAA RGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPP GTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEAKKTVMNVLEQ TIDPAKPWSYSQACASLDKTTSSGSPHHARKNDHWNGESFTGPLADQASKANLMYEQA KHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIA LPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPE LAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLS PDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLT GLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALL GEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPE GVNEDGVE" mat_peptide <1..940 /gene="ORF1" /product="p48" mat_peptide 941..2038 /gene="ORF1" /product="NTPase" mat_peptide 2039..2557 /gene="ORF1" /product="p22" mat_peptide 2558..2956 /gene="ORF1" /product="VPg" mat_peptide 2957..3499 /gene="ORF1" /product="Pro" mat_peptide 3500..5029 /gene="ORF1" /product="RdRp" gene 5013..6635 /gene="ORF2" CDS 5013..6635 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59368.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 6635..7408 /gene="ORF3" CDS 6635..7408 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59369.1" /translation="MASAFLANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQFLKVDPSPPSSSGSSVSSVKTQ STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS NVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQV" ORIGIN 1 taataatgcc accccttcta acaaagaaga ggttggtgca ttatccaaca tcaaagttgg 61 attcaagaaa atgctgggtg ccgtacccaa gggtaccaaa acacccagca gtggtcaaca 121 ttgccccaca gttaagatcg ggcctaaaac attaacaatc ccccctgagc ccccaaatgg 181 tgaagacacc gtacagtttg acgcaaagtc agaaactata attgggttgc cagacttaac 241 aacggtgcaa aatgaacatg aaaacacccc atacactgtc cctccattaa gtgagaggga 301 gcacagaccg gccactgaac cacttcctgg cacaatactg gagatgtggg atggtgagtt 361 ttaccactac tccgtgtacg tcagcgacgg caaagctctg ggggtccaca aaccaccggc 421 ggctataagc ctcgcgacga tagagctcac ccccatatca ctttactgga ggcccgttta 481 tacccccaac tacttggtct cccctgacac attaaagggc ctcgctggtg agaagttccc 541 ctacacggcc ttcagtaaca actgttacaa cttctgttgc tgggtgctag agctcaacga 601 cacgtggctt aacagaagat gcatttccag aactaccggc ttcttcaaac cataccagtc 661 ttggaacagg aaacctctcc caaccgttga tgatggaaag atcaaaaaag tggccaacgc 721 gatcctctgc gcactcggct cgctgttctc aaaaccaatc aaagacctat taggcaaact 781 caagccattg aacctactgc acttgcttgc gtcttgtgat tggacgtttg cgggtatagt 841 ggagacagtc atcttgatgg cagagctttt caatgtcttc tggaccccgc cagatgtctc 901 taattttata gcctccctaa taggtgattt tgaattgcaa gggcctgaag acctggctgt 961 ggagctcgtc cccgtggtta tgggcggcat agggatggtt ctcggtttca ccgctgagaa 1021 gataggccgc atgctgtcgt ccgctgcatc aacactgcgg gcgtgcaaag acctagggaa 1081 ctatgccctt gacatactca aattggtcat gaagtggttc ttcccaaaga aagaagagaa 1141 agctgagatg gaaaccttga gggcaatcga agatgccgtc ctggatatgg aagctatagg 1201 gaataaccac ctcacaaccc ttctcaagga caaagacagc ctcacggctt tcatgaagac 1261 cctggatctg gaggaggaga aggcgaggaa actgtccact aaatcatctt caccggacat 1321 agttggcacc atcaatgcca tactggctag gatagctgct gctagatccc ttctacataa 1381 ggccaaagag gagatgttca gcaggatcag gccagtggtc gtgatgatct caggcaggcc 1441 tggcattgga aagacccaca tggcgagaca tttggctaag agcatcgcca acaccatgag 1501 tggcgaccag agagtcgggc tcgttccgcg caacggtgtc gaccactggg atgcctacag 1561 gggagagagg gtggtcttgt gggatgacta cggtatgggg agccctgtta aagacgccct 1621 aacactgcaa gagctggccg acacatgtcc agtcacttta aattgtgata ggattgagaa 1681 taaggggaag atgtttgaca gtgatgtcat cataatcacg accaacctag tcaaccccgc 1741 gccccttgac tatgtgaact tcgaggcgtg ttctaggagg gttgacttcc tggtctatgc 1801 agagtcacca gaaattgaaa aggtcaagag ggacttccct ggccagcctg atatgtggaa 1861 agaccacttt aagccagact tctcccacat caagctgacc ctagcccccc agggggggtt 1921 tgacaaaaat ggcaacaccc cacacggcaa gggtaccatg cggtccctaa cccaggggtc 1981 cctgactgcg agagttgcag gcctcgtcca tgagaggaga gatgaattcc agctccaagg 2041 aaatgacctc caaacataca actttgacac caacagagtc tccgcattca ggaaattggc 2101 tgcagataac aagtatggga tcatggagac gatgagagtg ggtgcggcac tcaagaatgt 2161 gaagaccctg gaagatctta aaactgcatt gagggatgta aaattcaatg agtgtgaaat 2221 aatttacaag aactctaagt atcgagtctc ttccaatggt aaaggttcag tttctgttga 2281 taaagttgag gacaatgcat cccagactgt aaacgaggta caatcagcaa ttctcaggct 2341 caggcaagcg agggccagat attatatcag ctgtttccaa gacctcgtct acactctcat 2401 acaggttgcc ggagcatcat tcgttgtcag caggatctcc agaaggtttt gctgggaaag 2461 gtgggtcaaa ccgaccgaga cccaggaggt gaatgagtcc gaaaaggaag tggcacaagg 2521 cagatgggaa attgagccca aggacacaga accagaaggc aagaagggta agaacaagaa 2581 aggaaggggc aagaaacaca cagctttctc tagcaaaggc ctgagtgatg aagagtatga 2641 cgagttcaag agaatcaggg aggaaaggaa cggaaagtat tccattgagg aatacctgca 2701 agaccgggac cgctattatg aagaagtggc agttgcccgg gcaacagagg aggacttctg 2761 tgaagaggaa gaggccaaga taagacaaag aattttccgc ccgacaaaga aacagaggaa 2821 ggaggaaagg ggtgtgcttg gcttaatcac cggctcagac atcagaaaga ggagaccaga 2881 tgacttccaa ccaaaaggca acctatgggc agatgacacc aggagtgtgg actacaatga 2941 gaggcttgac tttgaagcgc ccccgagtgt ctggtcaaga atagtcccat taggcactgg 3001 ttggggattc tgggtttcat ccaaccttct gatcacaaca acacacgtcc tgcctaaagg 3061 ggttaaggag ctctttggag ttgaaatcaa gcaaatccaa gttcacaagt ctggagagtt 3121 ttgcaggttt agattcccaa gacctatcag gccagatgtc acaggactcg tactggagga 3181 aggcgcccca gaaggcactg tctgttctat actcataaaa agacccacag gtgagatgat 3241 ccccttggca gtgaggatgg gcacacatgc atccatgaaa atacagggca ggactgttgg 3301 tggccagatg ggaatgcttc tcacaggagc aaacgcgaag aacatggacc tcggcaccgg 3361 tcctggtgac tgcggttgcc cctacatcta caaacgtggc aacgacattg ttgtcgcggg 3421 tgttcacacc gcagcagccc ggggaggcaa cactgttata tgtgccaccc aagggcaaga 3481 tggggaagca gtccttgagg gaaatgagga ccttggcacc tattgtggcg ccccgattct 3541 gggccctggc aaggcgccta aactcagcac aaagaccaag ttttggcgct catcaccaga 3601 tgccttgcca cctggcacat atgaacctgc ttacttagga ggcaaagacc ctagagtgga 3661 aaaaggtccc tccctgcaac aagtcatgag agaccagttg agacccttca cagaacccag 3721 gggcaaacca cctagacctg cagtcttgga ggaagccaaa aagacagtga tgaatgttct 3781 agaacaaacc attgaccccg ccaagccatg gtcctattcg caggcatgtg cctcactgga 3841 caaaaccacc tctagtggta gcccccatca cgctaggaaa aatgaccact ggaatgggga 3901 gtccttcact ggtccacttg cagatcaggc atctaaagcc aacctcatgt atgagcaggc 3961 caaacatgtg cagcccgtgt atacggccgc gctcaaagat gagcttgtta agactgacaa 4021 gatctacaag aagataaaga agaggctcct atgggggtcg gaccttggca caatgatcag 4081 gtgtgccagg gcttttggtg gtctcatgga cagcatgaag gcaagttgta tagctcttcc 4141 ttgcagggta ggaatgaaca tgaatgaaga tggccccatt atatttgata aacattctaa 4201 gtacaggtac cactatgatg ctgactattc taggtgggat tcaactcaac aaaggagcat 4261 tctttctgcc gctatggaag taatggtgcg gttctctgct gaaccagaat tggcacaagt 4321 ggttgcagag gaccttttgg cacctagcca gcttgatgtc ggcgattttg tcatttcagt 4381 ccaggagggt ctgccatcag gagtcccatg cacatcacaa tggaactcaa tagcacactg 4441 gatcctaact ttgagtgcaa tggcagaagt gtcaggtctc tcaccagatg ttgtccaagc 4501 tcactcctgt ttttcatttt atggggacga tgagattgtc agtactgata tcaaccttga 4561 ccccatgaag ttgacacaga aactcaggga gtatggtctg gtccccaccc ggcctgacaa 4621 aactgaaggt cccctagtca taactgaaga cctcactggc ctgacgttcc tccgtaggtc 4681 gattgcccgg gacccagctg gttggtttgg aaagctggac caagactcga tcctgaggca 4741 gctgtactgg acaagggggc ctaaccacga gaacccgtac gagagcatgg ttcctcattc 4801 tcagcgggcc acacaactca tggcccttct tggtgaggcc tcactgcatg gtccccagtt 4861 ttacaagaaa gttagcaaga tggtcatcaa tgagatcaag agtggtggtc tggagtttta 4921 tgtgcccaga caagaggcca tgttcaggtg gatgagattc tctgacctca gcacatggga 4981 gggcgatcgc aatcttgctc ccgaaggtgt gaatgaagat ggcgtcgaat gacgcagctc 5041 catctaatga tggtgcagca ggcctcgtgc cagagatcaa caatgaggtc atgccccttg 5101 agcccgtggc tggtgcatcg ctggcgacac cagttgtcgg gcaacaaaat ataattgatc 5161 cctggataag aaataatttt gtacaagctc ctgcaggtga gttcacagtt tcccctagaa 5221 attcccctgg tgaaatttta cttgatttgg agttgggacc agaactgaac ccctatctcg 5281 ctcatctggc ccgtatgtac aatgggcacg ctggtggcat ggaagtgcaa attgtgctag 5341 ctgggaacgc gttcacagct ggcaagatca tatttgctgc catccctcca gggttcccat 5401 atgaaaattt gtcaccttca caaatcacaa tgtgccctca tgttataatt gatgttagac 5461 aattagaacc agttctatta cctatgccag atattagaaa taacttcttc cattacaatc 5521 agggcaatga cccaaaattg agattgatag ctatgctcta caccccttta agggctaaca 5581 attctggtga tgatgtgttt acagtttctt gtagggttct caccaaaccg tcacctgatt 5641 ttgaattcac atttttggtc ccccctacgg ttgaatctaa gaccaaacag ttcacattac 5701 ccatcctcaa aatatcagag atgaccaact caagattccc agtgccagtg gaaatgatgt 5761 atacagccag gaatgagaac caagttgtcc agccacagaa tggtagggtc acactcgatg 5821 gcgagctatt aggcaccaca cccctgttgg ctgtcaacat ctgcaaattc aagggggagg 5881 ttatagctaa gaatggagat gtgagatcct ataggatgga catggaaatt accaacactg 5941 atggcacccc aattgacccc acagaagaca caccaggtcc cattggttca cctgactttc 6001 aaggtatact ctttggcgtt gccagccaac gcaacaagaa tgagcaaaac cctgccacga 6061 gagcccatga agccaacatt aacactggtg gggaccaata tgcccccaaa ttggcccaag 6121 tgaaattctt ctcagagtcc caggatttcg aggtgcacca gcccacagtt ttcaccccag 6181 ttggtgtggc aggcgacact tcccaccctt tcagacagtg ggtcctgcct cgatacggtg 6241 gacatctcac caacaacacc cacttggctc cagcagtggc ccccctattc ccaggtgagc 6301 agatcctatt ctttagatca caaataccca gctcaggcgg ccatgaatta ggttacatgg 6361 actgccttgt cccacaagaa tgggtccaac acttctatca agaagctgcc acagctcagt 6421 ctgaggtggc actcataagg ttcatcaacc cagacactgg cagagtcctc tttgaggcca 6481 agctgcacaa gcaaggcttt ataactgtgg ctcacactgg tgataaccca attgttatgc 6541 caccaaatgg gtactttaga tttgaagcct gggttaatca gttttactca ctcgcccccg 6601 tgggaactgg gaatgggcgc aggaggatcc aataatggct agtgctttcc ttgcaaattt 6661 ggcaggaggc gttgcctcca atgggattag ttcactcata aatgctgggg ctaatgctat 6721 taaccaaaag gttgagtttg attataataa acaactccaa aatgcatcct tctcccatga 6781 taaggaaatg ctccaagccc aaattgaagc cactaaacgt ctgcaacaag agatgattga 6841 cataaagcaa ggggtgctga cagctgcggg attctctcct acagatgccg cgaggggttc 6901 tgtcggcgcg ccaatgacaa aattagttga ttggagtggc actagatatt gggcgcctgg 6961 tgccatgagg acaacaggct attcagggac ttttactcac ttgccccctg tgcagtctgc 7021 ttcatatgtt aataatcaaa atagacaatt tcttaaagta gacccttctc ctccttcttc 7081 gagtggttct tctgtttctt ctgtcaaaac acaatcaact accctctcag gcacttcaag 7141 ggtgggctct tcatctcagt caaccctgtc gaccaggccg agcacaagga catctgattg 7201 ggtgcgcagc cagaatgaaa ggttgagtcc ctttatggat ggagcgttgc aaacaacgta 7261 tgtaacgcca ccatccagta gggcatcaaa tgtcagcaca gtctcgaccg tgccgaaaga 7321 ggttttggac tcctggacgc ctatgtttaa tactcacagg cagccactct tcgcccattt 7381 gcgtaggcga ggggagtcac aggtttagtg aaaagattgg ttaggaaagt tgattagttt 7441 gttcttcttt tctactattc cttt //