![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
MW305676 | GII.12 | ![]() |
|
---|---|---|---|
GII.P33 |
ORF1: 1..5075 ORF2: 5056..6663 ORF3: 6663..7442LOCUS MW305676 7488 bp RNA linear VRL 18-JUL-2024 DEFINITION Norovirus GII isolate 11298 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305676 VERSION MW305676.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7488) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7488) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7488 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="11298" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Japan" /collection_date="13-Dec-2012" /note="genotype: GII.12[GII.P33]" gene <1..5075 /gene="ORF1" CDS <1..5075 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59364.1" /translation="AAAISNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPPRETIQK QKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKEGVSGLPELSTVRQPDETNTAFSVP PLNQRENRDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPL SLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR TTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLRPLNILNI LASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKDEANELA MVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLSTKSASPDIVG TINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDLAKKVAATLT GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFPGQP DMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVARASGLLHERLD EYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNVKTVSELKQALKN IAIRRCQIVYSGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHHLRCARIRYYVK CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKDGCPKPKDEEEF VISSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ DRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN PDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFVTSTHV IPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR PTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR GNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILGPGNAPKLST KTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSV LEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNEHWNGESFTGKL ADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARA FGGLMDEFKAHCVALPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAVLA AALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHW LLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRP DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPAETM IPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFS DLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2600 /gene="ORF1" /product="p22" mat_peptide 2601..2999 /gene="ORF1" /product="VPg" mat_peptide 3000..3542 /gene="ORF1" /product="Pro" mat_peptide 3543..5072 /gene="ORF1" /product="RdRp" gene 5056..6663 /gene="ORF2" CDS 5056..6663 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59365.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6663..7442 /gene="ORF3" CDS 6663..7442 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59366.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL ISGSSNPSSLARSSSSISSQSTSPSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQA" ORIGIN 1 ccgctgctgc tatcagcaac aacgacatcg caaaatcttc aagtgacgga gtactaagta 61 gtatggctgt cacttttaaa cgagccctcg gggcccggcc taaacagccg cccccgaggg 121 aaacaataca aaaacaaaaa cctccacgac cgcccacccc ggagttaatc aaaaagattc 181 cacctccccc gcccaacggg gaggacgata tagtggtatc ctacagtgcc aaagaggggg 241 tctccggcct gcctgagcta tccaccgtca ggcagccgga tgagacaaac acagcattta 301 gtgtcccccc actcaaccag agggaaaaca gggatgctaa agaaccgctg cctggcacca 361 tattggaaat gtgggacgga gagatctacc attacggctt gtacgtggag cggggtttgg 421 tgcttggggt gcacaaacca ccagcggcta ttagcctcgc aaaggttgaa ctaacaccac 481 tgtctttgta ctggagacca gtgtacaccc ctcagtacct catatccccg gaaacgctca 541 aaaagctaca tggagagaca ttcccttaca cggcctttga taacaactgt tacgccttct 601 gttgttgggt cttggatcta aacgattctt ggctcagcag gaggatgatt cagagaacaa 661 ctggcttctt cagaccctac caggactgga acaggaaacc tctccccact atggatgatt 721 ccaaattgaa aaaggtggct aatatagtcc tgtgtgcttt gtcatcacta ttcaccaggc 781 ccattaagga cataatagga aaactaaggc ccttaaacat actcaacata ctggcttcct 841 gcgactggac tttcgcagga gtagtggaat ccctaattct ccttgcagaa ctcttcggag 901 ttttctggac acccccagat gtgtctgcga tgatcgcccc cttactaggt gactacgaac 961 tacagggacc tgaagatctc gctgtagagc tcgtaccagt agtaatgggg gggataggtt 1021 tggttctagg tttcaccaag gagaagattg gcaaaatgct gtcatccgcc gcgtccaccc 1081 ttagagcttg taaagacctt ggagcatatg ggttagaaat cctgaagttg gtcatgaaat 1141 ggttcttccc gaagaaagac gaggcaaatg aacttgcaat ggtgagatcc attgaggacg 1201 cagtgctgga cctcgaagca attgaaaaca atcacatgac caccctgctc aaagacaaag 1261 acagtttggc aacctacatg aagactctgg atcttgaaga ggagaaagct aggaaactct 1321 ccaccaaatc cgcttctcct gatattgtgg gcacaatcaa ttcacttctg gcacgaattg 1381 cagctgcccg ttccctggta caccgggcaa aagaagagct ttccagtagg ccaagacccg 1441 ttgttgttat gatatcagga aagccaggaa tagggaagac ccatcttgcc agagatttgg 1501 caaagaaagt tgcagccacc ctcacaggag accagagggt gggcctcatc ccacggaatg 1561 gtgtcgacca ttgggatgca tacaaaggtg agagagtcgt cctttgggat gactatggaa 1621 tgagtaaccc cattcatgac gcccttaggc tacaagaact tgctgacact tgccccctaa 1681 cattaaattg tgatagaatt gagaacaaag gaaaggtttt tgacagtgat gccataatta 1741 ttacaactaa tttggctaac ccggcaccac tggactatgt taactttgaa gcatgttcga 1801 ggcgtatcga cttccttgtg tacgctgatg cccccgacgt tgaaaaggca aaacgcgact 1861 tcccagggca acctgacatg tggaaggatg cttttagacc tgacttctca cacataaagt 1921 taatgttggc tcctcagggt ggttttgata agaacggcaa caccccacat ggaaaaggtg 1981 tcatgaaaac cctcacatct ggctccctcg ttgcccgtgc ttcaggactc ctccacgaaa 2041 gactggacga gtacgagttg caagggccaa cacccacaac cttcaatttc gaccaaaaca 2101 aggtgttcgc ctttaggcag ctcgctgctg aaaataaata cgggctgatg gacaccatga 2161 gagtgggaag ccagctcaag aatgtcaaaa ctgtgtcaga gctcaaacag gcactcaaga 2221 acattgcaat tagaaggtgc cagatagtct acagtggtct cacatactca cttgaatctg 2281 atggcaaagg taatgtaagg gtcgagaagg tgcaaagtcc agctgtgcag accaacaatg 2341 agctaactgg cgcactacac catctgaggt gcgctaggat tagatattat gttaagtgtg 2401 ttcaggaagc tttgtattcc atcatccaaa ttgctggggc cgcgtttgtc accacgcgca 2461 ttgcaaagcg catgaacata caaaacctct ggtccagacc acaggtggag gatgaggaag 2521 agaccaccag caaagacgga tgcccaaaac caaaggatga ggaggagttt gtcatctcgt 2581 ctgaagacat caaagtcgaa ggcaagaagg gaaagaacaa gtctggccgt ggcaagaaac 2641 acacagcctt ttcgagtaaa ggtcttagtg atgaggagta cgatgagtat aaaagaatta 2701 gagaagaaag aaatggtaag tactccatag aagaatacct ccaggacaga gacaagtact 2761 atgaggaggt ggccatagcc agggctactg aagaggactt ctgtgaggaa gaagaagcca 2821 agattcgtca gaggattttc agaccaacaa ggaaacaacg caaggaggag agggcttcac 2881 tcggactggt tacaggctca gaaatcagga aaaggaaccc ggatgacttc aaacccaaag 2941 gaaaactgtg ggctgatgat gacaggagtg tcgattacaa tgaaaagctc agttttgagg 3001 cccccccaag catctggtcg agaatagtca actttggatc aggttggggc ttctgggtct 3061 caccaagcct ttttgtaaca tccacccatg tcatacctca aggggcacaa gaatttttcg 3121 gtgtttccat caaacagatc caaattcaca agtcgggtga attctgccgg ctaagattcc 3181 caaaaccaat tagaactgat gtgacaggta tgatcctgga ggagggggcc cctgaaggga 3241 ctgtggccac actgctcata aagaggccaa ctggagagct gatgccactg gcagctagaa 3301 tgggtaccca tgcaactatg aggatccagg gtcgaactgt cggggggcag atggggatgc 3361 tcctgacggg atccaacgcc aagagcatgg atttgggtac cacaccaggt gactgtggat 3421 gcccatacat atacaaaaga ggaaatgact acgtagtcat cggggtccac acagctgccg 3481 cccgcggagg gaacactgtc atctgtgcaa cacaaggaag tgagggcgag gctgtgcttg 3541 aaggtggcga caacaaaggc acctattgtg gcgccccaat cctaggtcca ggaaatgccc 3601 ccaaactcag tactaaaacc aaattctgga ggtcctcaac agcaccactc ccacctggca 3661 catatgaacc agcttacctc ggaggcaaag accccagagt aaaaggtggc ccctcattac 3721 agcaagttat gagagaccaa ctgaaaccat ttacagaacc cagaggtaag ccaccaaagc 3781 ccagtgtact agaagcagcc aaaaagacaa tcattaatgt ccttgagcaa acaatagacc 3841 caccccaaaa atggacgttc gcacaggcgt gcgcatccct cgacaaaaca acctctagtg 3901 gctacccgca ccacgtgcgg aagaatgaac attggaatgg ggaatctttc acaggaaaat 3961 tggctgatca ggcttcaaaa gctaacctga tgtttgagga aggtaaacac atgacaccag 4021 tctacacagg agccctcaag gatgagttag tcaaaactga taaaatatat ggcaagatca 4081 agaagaggtt gctatggggt tcagatctgg caaccatgat ccgctgcgct cgagcgttcg 4141 gagggttaat ggatgaattc aaggctcact gtgtcgcact ccccatcagg gtagggatga 4201 acatgaatga ggatggcccc atcatttttg agaaacactc tagatacacc taccattatg 4261 atgcagacta ctctcggtgg gactcaacac agcagagagc tgttttagca gcagccctgg 4321 agatcatggt aaaattttcc ccagaaccac acctggccca gatcgttgca gaggatctcc 4381 tatctcccag cgtgatggac gtgggcgatt ttaaaatatc aatcactgaa ggactcccct 4441 ctggggtgcc ttgcacctca caatggaatt ctattgctca ttggctcctc acgctttgtg 4501 cactctctga ggtaacagat ttgtctcctg acatcatcca agcaaactca ctcttctctt 4561 tctatggtga cgatgaaatt gtgagcacag acatcaaatt agatccagaa aagctgacag 4621 ctaaactaaa agagtatggt ctcaagccaa cccgtcctga caagactgaa gggcctctgg 4681 tcatttctga ggacttagat ggtctgacct tcttacggag gactgtgacc cgtgacccag 4741 caggttggtt tggaaaattg gaacaaagct caatacttag acagatgtat tggaccaggg 4801 gccccaacca tgaggaccct gctgaaacaa tgataccaca ctcccaaaga cccatacagt 4861 tgatgtccct attaggtgaa gctgcattac atggcccatc attctacagc aaaatcagca 4921 aattggtcat ctcagagtta aaagaaggtg gcatggactt ttacgtgcca aggcaagagc 4981 caatgtttcg atggatgagg ttctcagact tgagcacgtg ggagggcgat cgcaatctgg 5041 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgca 5101 gccggtctcg taccagaggt caacaatgag accatggcac ttgaaccggt ggctggggct 5161 tcaatagccg ccccactcac cggtcaaaat aatgttatag acccctggat tagattaaac 5221 tttgtgcaag ctcccaatgg agagtttaca gtttcacccc gcaattcgcc tggggaagtc 5281 ctactaaact tggaattagg ccctgaacta aatccatatt tggcacacct ttccagaatg 5341 tacaatggtt atgcaggtgg agttgaggtg caagtactac tggctgggaa cgcgttcacg 5401 gctggaaaac tggtattcgc cgcagttccc cctcattttc cattagaaaa cataagccct 5461 ggccaaataa ccatgttccc tcatgtaatt attgatgtta ggactttaga accagtccta 5521 ttgcctcttc cagatgttag gaacaatttc tttcactaca atcagcaaaa cgaaccgagg 5581 atgaggcttg tggcaatgct ctataccccc cttaggtcta atggttctgg tgatgatgta 5641 tttactgtct cctgtagagt gcttactcga ccctctcctg attttgattt caattatttg 5701 gtacccccta cagttgaatc taaaactaaa cccttcacac tccccatctt gaccataggg 5761 gagttaacca attccagatt ccctgtgccc atagatgaac tctacactag ccccaatgag 5821 agtttggtgg tacaacccca gaacgggaga tgcgcgctgg atggggagtt gcagggtact 5881 actcagctcc tccccacggc gatctgctcg ttcaggggtc ggattaatca gaaagtgagt 5941 ggagagaacc atgtttggaa tatgcaagtc accaacatta atggaacccc ttttgatcca 6001 acagaggatg ttccagctcc tctaggtaca ccagactttt ctggcaagct ctttggcgtc 6061 ctaagccaga gggaccatga taatgcctgt aggagccatg atgcagtgat tgcaactaat 6121 tctgctaaat ttaccccaaa attgggcgct atacaaattg gcacatggga acaagatgat 6181 gtacacatca accaacccac caaatttact ccagttggct tgtttgaaag tgaaggtttt 6241 aatcagtgga cactccctaa ttattctgga gccttaacac tcaacatggg gttggccccc 6301 cctgtggccc ccacatttcc tggcgagcaa attcttttct tcagatccca cattcctctt 6361 aaaggaggtg tggcagaccc agttattgat tgtctcttgc cccaagagtg gatccaacac 6421 ctttatcagg agtcagcccc ttcacaaaca gatgtagcac tgatcagatt cacaaatcca 6481 gacacagggc gtgtcctatt tgaagcaaaa ttgcacagga gtggctacat cacagtggcc 6541 aacactggta gcagaccaat tgtggtgcca gctaatggtt acttcaggtt tgactcttgg 6601 gttaatcagt tttattctct cgcccccatg ggaactggga atgggcgcag aagggtgcag 6661 taatggctgg agctttcata gcaggtcttg ctggtgatat agtcaccaat ggaattggtt 6721 cactcgtgaa cgctggggcc aatgcaataa accaaaaagt agactttgaa aacaataagc 6781 aactacagca ggcatccttc aatcatgaca aagagatgct gcaagctcaa attcaagcca 6841 ccaaacagct acaggctgat atgattgcaa tcagacaagg ggtgttgacc gcgggcggct 6901 tctcccccac tgatgcagca agaggtgcag tcaacgcacc catgacacag gtcttggact 6961 ggaacgggac tagacattgg gcccccggag ccatgaaaac aactgctttc tccggtgggt 7021 tcaccagtgc ttctcatgcc aggaccgttg acctgactag gaaaacatca gccacaccgg 7081 cctctatgcc tgtctctagg cccagttcta ctgcctctac tgtttccacc cgttctacct 7141 tgattagtgg atcctctaat ccttcttctc tagctaggag ttcttccagt atttcttccc 7201 aatctacttc cccatcctct cggactagtg attgggtacg tagccaaaac agagcactgg 7261 agccttatat gagcggggcg ctgcgtacag cctacgtgac acctccatcc agtagggctt 7321 ctagcaatgg cacagtctca accgtgccaa aagaggtttt ggactcctgg acatctgcat 7381 tcaacacaca cagacaaccg ctgtttgctc atctccgtcg gagaggggag tcacaagctt 7441 agtgaaaaga tggtcttttc ttttgttcct ttgaaatctc tgtctttt //