Typing tool
|
Complete norovirus genomes
MW305671 | GII.14 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6654 ORF3: 6654..7448LOCUS MW305671 7493 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate 10995 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305671 VERSION MW305671.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7493) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7493) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7493 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="10995" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan" /collection_date="24-May-2012" /note="genotype: GII.14[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59349.1" /translation="FGSQNSVNDSINATPSNKEEVGAFSNIKVGFKKMLGAVPKSTRA PSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYT VPPLSEREHRSATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGVVETVILMAELFNIFWTPPDVSNFIASLIGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRTRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER RDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKFAL RDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIEDNASQTANEVQSAILRLRQARARYY ISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEVNESEKEVAQGRWEIEP KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGTDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG VKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6654 /gene="ORF2" CDS 5044..6654 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59350.1" /translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASIAAPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEVLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV ASQRSSTDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP QEWIEHFYQEAAPSQSDIALVRFINPETGRVLFEAKLHKQGFLTIAASGDHPIVMPTN GYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6654..7448 /gene="ORF3" CDS 6654..7448 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59351.1" /translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG SRYWAPNSMKTTGYSGTFASQGIKSFPHLSNQIPSAVKSTKPLPSISSSSSVYSSPST APSQSTQSTTLSVGTGSSRSNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 cctttggcag tcaaaactct gtcaatgaca gtatcaacgc caccccttcc aataaggaag 61 aggttggtgc attctccaac atcaaagttg gatttaagaa aatgctgggt gctgtaccca 121 agagcaccag ggcacccagc agtggtcaac attgccccac agttaagatc gggcctaaaa 181 cattaacaat tccccctgag cccccaaatg gtgaagacac tgtgcagttt gatgcaaagt 241 cggaaactat aatcgggctg ccggacttga caacggtgca aaacgaacat gaaaacaccc 301 catacaccgt ccccccatta agtgagaggg agcatagatc ggccactgaa ccacttcctg 361 gcacaatatt ggagatgtgg gatggtgaat tttaccacta ctccgtgtat gtcagcgatg 421 gcaaagctct gggggtccac aaaccaccgg ctgctataag cctcgcgacg atagaactca 481 cccccatatc tctctactgg agacccgttt acacccccaa ctatttggtc tccccagaca 541 cattgaaagg cctcgctggt gagaagttcc cctacacggc cttcagtaac aattgttata 601 acttttgttg ttgggtgctt gagctcaacg acacgtggct caatagaaga tgcatttcca 661 gaaccaccgg cttcttcaaa ccctatcagt cctggaacag gaagcccctc ccaaccgtcg 721 atgatggaaa gatcaaaaag gtggccaacg cgatcctctg tgcacttggc tcactgttct 781 caaagccaat taaagatttg ttaggcaaac ttaagccatt gaacctgcta cacttgcttg 841 cgtcatgcga ttggacgttt gcaggtgtag tggagacagt catcttaatg gcagaacttt 901 tcaatatctt ctggaccccg ccagatgtct ctaattttat agcctccctg ataggtgatt 961 ttgaattaca agggcccgag gacctggctg tggaactcgt tcctgtggtt atgggtggca 1021 taggaatggt tctcggcttc accgctgaga agataggccg tatgctgtca tccgccgcat 1081 caacactgcg ggcatgcaaa gacctaggga actatgccct tgacattctc aaattggtca 1141 tgaagtggtt cttccccaag aaggaagaga aagctgagat ggaaacctta agggcgatcg 1201 aggatgccgt cctagatatg gaagctatag ggaataacca tctcacgacc ctcctcaagg 1261 acaaagacag cctcacggcc tttatgaaga ccctggactt agaagaggaa aaagctagaa 1321 aactgtccac taagtcatct tcaccggaca tcgtcggcac cattaacgcc atactagcca 1381 ggattgctgc tgccagatcc cttctacata aagccaaaga agagatgttt agtaggacca 1441 gaccagtggt cgttatgata tcaggcagac ctggcattgg caaaactcac atggcaagac 1501 atttggctaa gagcatcgcc aacaccatga gtggcgacca gagagtcggg ctcgtcccac 1561 gcaacggtgt cgaccactgg gatgcctaca gaggagagag ggtggtcttg tgggacgact 1621 acggtatggg gagccctgtt aaagatgcct tgacactaca ggagctggcc gacacctgcc 1681 cagtcacttt aaattgtgat aggattgaga acaaggggaa gatgttcgac agtgatgtca 1741 tcataatcac aaccaacctg gtcaaccccg cgcccctcga ttatgtgaac ttcgaggcgt 1801 gttccaggag agttgacttc ttggtctatg cagagtcacc agagattgaa aaggtcaaaa 1861 gggacttccc tggccaacct gacatgtgga aggaccattt taagccagac ttttctcaca 1921 tcaaactaac tttagccccc cagggcgggt ttgacaagaa tggtaacact ccgcacggta 1981 agggtaccat gcggtccctg acccaggggt ccctgactgc aagagttgcg ggccttgtcc 2041 atgagaggag agatgagttc caactccaag gaaacgatct ccaaacatac aattttgaca 2101 ccaacagagt ctccgcattc agaaaactgg ctgcagataa caagtatggt atcatggaaa 2161 cgatgagagt aggtgcggca ctcaaaaatg taaagacctt ggaagatcta aaatttgcat 2221 taagggatgt aaaattcaat gagtgtgaaa taatttacaa gaactctaag tatcgagtct 2281 cttccaacgg taaaggctca gtttctgttg acaaaattga ggacaatgca tcccagaccg 2341 cgaacgaggt acaatcagca attctcaggc tcaggcaagc gagggccaga tattacatca 2401 gctgcttcca agacctcgtc tacactctca tacaggttgc cggagcatca ttcgttgtca 2461 acagaatctc caaaaggttc tgctgggaaa ggtgggtcaa accaaccgag acccaggaag 2521 tgaatgagtc cgaaaaggaa gtggctcaag gtagatggga aattgagccc aaggacacag 2581 aaccagaagg caagaaaggt aagaacaaga aaggaagggg caagaaacac acagctttct 2641 ctagcaaggg cctgagtgat gaagagtatg acgagttcaa gagaatcagg gaagaaagga 2701 atggaaagta ctccattgag gaatacctgc aagaccggga ccgctattat gaagaagtgg 2761 cagttgcccg ggcaacagag gaggacttct gtgaggagga agaggccaaa ataagacaaa 2821 gaattttccg cccgacaaag aaacaaagga aggaggaaag gggtgtactt ggcttagtca 2881 ccggcacaga catcagaaag aggagaccag acgattttca accaaaaggc aatctatggg 2941 cagatgacac caggagtgtg gactacaatg agagacttga ttttgaagcg cccccaagtg 3001 tctggtcaag aatagttcca ttaggcactg gttggggttt ctgggtttca tccaaccttc 3061 taatcacaac aacacacgtc ctgcctaaag gggttaagga actctttgga gttgaaatta 3121 aacagatcca agttcacaag tctggggaat tttgcaggtt cagattccca agaccaatca 3181 ggccagatgt cacagggctc gtgctggagg aaggcgcccc agaaggcact gtctgttcta 3241 tactcataaa aagacccaca ggtgagatga tccccttggc agtgaggatg ggcacacacg 3301 catccatgaa aatacaaggc aggaccgttg gtggccagat gggaatgctt ctaacaggag 3361 caaatgcaaa gaacatggat cttggcaccg gccctggtga ctgcggttgt ccctacatct 3421 acaaacgcgg caacgacata gttgtcgcgg gtgtccacac cgcagcagcc cgaggaggta 3481 acactgtcat atgcgccact caagggcaag atggggaagc agtccttgag ggaaatgagg 3541 acctcggtac ctactgtggc gctccaattc tgggccctgg taaggcgcct aaactcagca 3601 cgaagaccaa gttttggcgc tcatcaccag atgccttgcc acctggcaca tatgaacctg 3661 cctacctggg aggaaaagac cccagagtgg aaagaggacc ttccctgcag caagtcatga 3721 gagaccagtt gagacccttc acagaaccca ggggaaagcc gcctagacct gcagtcttag 3781 aagaagccaa gaagacagtg atgaatgttt tagaacaaac cattgaccct gcaaaaccgt 3841 ggtcctactc gcaagcatgc gcctcactgg acaaaaccac ttctagtggt agcccccatc 3901 atgtaaagaa aaatgaccac tggaatgggg agtccttcac tggtcccctt gcagatcagg 3961 catccaaagc caacctcatg tatgaacagg ccaaacatgt gcagcccgtg tacacggccg 4021 cgctcaaaga tgagcttgtt aagactgaca agatctacaa aaagataaag aagagactct 4081 tatggggatc ggaccttgga acaatgatca ggtgcgccag ggcttttggt ggtctcatgg 4141 acagcatgaa ggcaagctgt atagctcttc catgcagggt aggaatgaac atgaatgaag 4201 atggccctat catatttgac aaacattcta agtataggta ccactatgat gctgactatt 4261 ctaggtggga ctcaacccag caaaggagca ttctctctgc cgctatggaa gtgatggtgc 4321 gattttctgc tgaaccagaa ttggcacaag tggttgcaga ggacctttta gcgcctagtc 4381 agcttgatgt tggtgatttt atcatctcag ttcaggaggg cctgccatca ggagtcccat 4441 gtacatcaca atggaactca atagcacact ggatcctaac tttgagtgcg atggcagaag 4501 tgtcaggtct ctcaccagat gttgtccaag ctcattcctg cttttcattt tatggggacg 4561 atgagatcgt cagcactgat atcaaccttg accccatgaa gttgacacag aaactcaggg 4621 agtacggcct ggttcccacc cgacctgaca aaactgaagg tcccctcgtc ataactgaag 4681 acctcaccgg cctgacgttc cttcgtaggt cgattgcacg ggacccagct ggatggtttg 4741 gaaaattgga ccaagattca atcctcaggc aactatactg gacaaggggg cctaaccatg 4801 agaacccgta cgagagcatg gtccctcatt ctcagcgggc cacacagctt atggcccttc 4861 ttggcgaggc ttcactgcat ggcccccaat tttacaagaa agtcagcaaa atggttatca 4921 atgagattaa gagtggtggt ctggaatttt atgtgcccag acaggaggcc atgtttaggt 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgaaggtg 5041 tgaatgaaga tggcgtcgaa tgacgctact ccatctgatg atggtgcagc cggcctcgta 5101 ccagagatca acagtgaggt tatggctctt gaacccgtcg ctggggcctc cattgcagcc 5161 cccgtagtcg gccaacagaa tataattgat ccctggatta gaaataattt tgtacaagcc 5221 cctgctggtg aattcacagt ttcccctaga aactctcctg gagaagttct acttgatttg 5281 gaattgggtc ctgaacttaa tccctatctt gcacatttgg ccaggatgta caatgggcat 5341 gcaggaggaa tggaagtgca gatagtactg gctgggaatg cgttcacagc tggtaaaatc 5401 ctatttgctg ccatcccgcc tagcttcccc tatgaaaatt tgtcacccgc tcagttgact 5461 atgtgccccc atgtgatagt ggatgtgaga caattggaac cagtgcttct gccaatgcca 5521 gatataagaa atgttttcta tcactataac cagaacaata gtcctaaact taggcttgta 5581 gctatgcttt acactcctct gagggccaac aactcaggtg atgacgtgtt cacggtctct 5641 tgccgcgttt taacacgccc ttctccagat ttccagttca cctttctggt ccctcctaca 5701 gttgagtcta aaactaagaa tttcaccctt cccgttctca gagtctcaga gatgacaaat 5761 tcaaggttcc ccgttgtctt ggaccaaatg tatacaagca ggaatgaaaa catcattgtc 5821 cagccccaaa acggcaggtg cacgactgac ggtgagctgc ttggcactac catcttgcag 5881 tctgtgtcta tttgcaattt taaaggaaca atgcaggcaa agctgaatga agaaccacga 5941 taccagttac aactcaccaa cttggatgga tcacccatag atccaacaga tgatatgcct 6001 gcccctcttg gcacaccaga tttccaggcc atgttatatg gcgttgcaag tcaacgctct 6061 tccacagaca atgccaccag ggcacatgat gcacagattg acactgcggg tgacacattc 6121 gccccgaaaa ttggccaggt tcgttttaaa tcaagctcta atgattttga cctacatgac 6181 cctacaaaat tcacacctat tggtgtcaat gtggatgatc agcacccttt cagacagtgg 6241 tccctaccaa actacggtgg tcaccttgcc ctgaacaatc acttagcccc cgctgtgaca 6301 ccactctttc ctggcgagca gattttgttc ttcaggtcat acattccaag cgccggaggc 6361 cacacagacg gtgctatgga ctgcttgctg ccccaagagt ggatagagca cttctaccag 6421 gaagctgccc cttcccaatc tgacatcgca ctggtaaggt tcatcaaccc tgaaacagga 6481 agagtgctct ttgaagctaa attgcataaa caaggtttcc tcacaattgc agcatctgga 6541 gatcacccta ttgtgatgcc cactaatggt tactttaggt ttgaagcttg ggtcaaccct 6601 ttctatactc tcgcccccgt gggaactggg tctgggcgca ggaggattca ataatggctg 6661 gagctttcct tgcaggtttg gcaggtgacg ttgtgacttc cagcttgggc tcacttgtgg 6721 gcgctggagc caacgccatc aaccagaaag tggagtatga cttcaacaga cagctccagg 6781 aggcatcttt tagacatgat aaggatatgc tcaaagccca ggttgcagca acagcaggcc 6841 ttcaacaggc catgatagac atcaagcggg aggcattgac cgcaggcggc ttttcccccg 6901 ctgatgctgc aagaggtgca gttagagcgc ctatgacaca gattcttgac tggaatggtt 6961 ctaggtattg ggcccccaac tccatgaaga caactggcta ttcaggtaca tttgcctccc 7021 aaggcattaa aagtttcccc cacctgtcta atcaaattcc aagtgctgtt aaatctacca 7081 aacctttacc atctatatct agttcttcta gtgtatatag ttctccttct actgcccctt 7141 cacaatcaac acaatcaaca acgctgtctg taggaacagg gtcctccaga tctaacaccg 7201 tgtccacaaa gacctccaca ctgtcgagga cgagtgactg ggtcagaggt caaaatgaga 7261 tgcttggccc gttcatgagt ggtgcactcc aaactgctta tgtcacacca ccatcaagca 7321 gggcctcatc acaaggtacg gtctcgaccg tacccaaggc tgttttggac tcctggactc 7381 ccatgttcaa cacccacagg cagcctctct tcgcccactt gcgtaggcga ggggagtcac 7441 agatttagtg aaaaggatga ttagggtttc ttcctttccc cttcttattc ttt //