Typing tool
|
Complete norovirus genomes
MW305648 | GII.14 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6654 ORF3: 6654..7448LOCUS MW305648 7458 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate Arg16008 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305648 VERSION MW305648.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7458) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7458) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7458 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg16008" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="2017" /note="genotype: GII.14[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59280.1" /translation="FGSQNSVNDSNNATPSNKEEVGAFSNIKVGLKKMLGAVPKGTKA PSSGQHCPTVKIGLKALAIPPEPPNGEDTVQFDAKSETIVGLPDLTTVQNEHENTPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKVKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVSWDDYGMGSPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER RDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKIAL RDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAILRLRQARARYY ISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETQEVSDSEKEVAQGRWEIEP KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG VKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNEGLGTYCGAPILGPGKAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRNILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6654 /gene="ORF2" CDS 5044..6654 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59281.1" /translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASLAAPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLSRMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNGPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT ILQSVSICNFKGTMQAKLNEEPRYQLQITNLDGSPIDPTDDMPAPLGTPDFQAMLYGV ASQRSSSDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSSDFDLHDPTKFTPIGVNVDD QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP QEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN GYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6654..7448 /gene="ORF3" CDS 6654..7448 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59282.1" /translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG SRYWAPNSMKTTGYSGTFVSQGIRNSPHLSNQTPSAVKPIKPLLSISSSSSVYSSPST APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 cctttggcag tcaaaattct gtcaatgaca gcaacaatgc caccccttct aacaaagaag 61 aggttggtgc attctccaac ataaaagttg gactcaagaa aatgctgggt gccgttccca 121 agggcaccaa agcacccagc agtggccaac attgccccac agtcaagatc gggcttaaag 181 cattagcaat cccccctgag cccccaaatg gtgaagacac cgtacagttt gatgcaaagt 241 cagaaactat agttggattg ccggatttga caacggtgca aaatgaacat gaaaacactc 301 catacactgt ccctccatta agtgagaggg aacacagacc ggctaccgaa ccacttcctg 361 gcacaatatt ggaaatgtgg gatggtgagt tttaccatta ttccgtgtac gtcagcgacg 421 gcaaagctct gggggtccac aaaccaccgg cggctataag cctcgcgacg atagagctca 481 cccccatatc actttactgg aggcccgttt atacccccaa ttacttggtc tccccggata 541 cattaaaggg tctcgctggt gagaagtttc cctacacggc cttcagtaac aactgttata 601 acttttgttg ttgggtgctt gagctcaacg acacgtggct taacagaaga tgcatttcca 661 gaactaccgg cttcttcaag ccataccagt cttggaacag aaaacctctc ccaaccgttg 721 atgatggaaa gatcaaaaag gtggccaatg caatcctctg tgcactcggt tcactgtttt 781 caaaaccaat caaagacctg ttaggtaagc tcaagccatt gaatctgctg cacttgcttg 841 cgtcttgtga ttggacgttt gcgggcatag tggagacagt catcttgatg gcggagcttt 901 tcaatgtctt ttggaccccc ccagatgtct ccaatttcat agcctcccta ataggtgact 961 ttgaattaca agggcctgag gacctggccg tggagctcgt tcccgtggtt atgggcggca 1021 tagggatggt tctcggtttc accgccgaga agataggccg catgctgtcg tccgctgcat 1081 caacactacg ggcgtgcaaa gacctaggga actatgccct tgatatactc aaattggtca 1141 tgaagtggtt cttcccgaag aaggaagaga aagctgagat ggagaccctg agggcgattg 1201 aagatgccgt cctagatatg gaagctatag ggaacaacca cctcacaacc cttctcaagg 1261 acaaagatag cctcacggct ttcatgaaga ccctggatct ggaagaggag aaggcgagga 1321 aactgtccac taaatcatct tcaccggaca tagtcggcac cattaatgcc atactggcta 1381 ggatagctgc tgctagatcc cttctacata aggtcaaaga ggagatgttc agcaggatta 1441 ggccagtggt tgttatgatc tcaggcaggc ctggcattgg aaaaacccac atggcgagac 1501 atttggctaa gagcatcgcc aacaccatga gtggcgacca gagagtcggg ctcgttccgc 1561 gcaacggcgt cgaccactgg gatgcctaca gaggagagag ggtggtctcg tgggatgact 1621 acggcatggg gagccccgtt aaggacgccc taacactaca agagctggcc gacacatgcc 1681 cagtcacttt aaattgtgac aggattgaga acaaggggaa gatgtttgac agtgatgtca 1741 tcataatcac gaccaaccta gtcaaccccg cgcccctcga ctatgtgaac tttgaggcgt 1801 gttctaggag ggttgacttc ctggtctacg cggagtcacc agaaattgaa aaggtcaaga 1861 gagacttccc tggccaacct gacatgtgga aagatcattt taaaccagac ttctcccaca 1921 tcaagctgac tctagccccc cagggtgggt ttgacaaaaa tggcaacacc ccacacggta 1981 agggaaccat gcggtctcta acccaggggt ccctgactgc gagagttgca ggccttgtcc 2041 atgagaggag agatgaattc cagctccaag gtaacgacct ccaaacatac aattttgaca 2101 ccaacagagt ctccgcattc aggaaattgg ctgcagataa caagtatggg atcatggaga 2161 caatgagagt gggtgcggca ctcaagaatg tgaagaccct ggaagacctt aaaattgcat 2221 tgagggatgt aaaattcaat gagtgtgaga taatctacaa gaactctaag taccgggttt 2281 cttccaacgg taaaggctca gtttctgttg acaaagttga ggacaacgca tcccagactg 2341 taaacgaggt acaatcagca attctcaggc tcaggcaagc gagggccaga tattacatca 2401 gctgcttcca agacctcgtc tacactctca tacaggttgc cggagcgtca tttgttgtca 2461 gcaggatctc tagaaggttc tgctgggaga ggtgggtcaa accgaccgag acccaggagg 2521 tgagtgattc cgaaaaggaa gtggcgcaag gcagatggga aattgagccc aaggatacag 2581 aaccagaagg caagaagggc aagaacaaga aaggaagggg taagaaacac acagctttct 2641 ctagcaaagg cctgagtgat gaagaatatg acgagtacaa gagaatcagg gaagaaagaa 2701 acggaaagta ctccattgag gaatacctgc aagaccggga ccgctattat gaagaagtgg 2761 cagttgctcg ggcgacagag gaggactttt gtgaagagga agaggccaag ataagacaaa 2821 gaattttccg cccgacaaag aaacagagga aggaggagag gggtgtgctt ggcttagtca 2881 ccggctcaga catcagaaag aggagaccag atgacttcca accaaaaggc aacctgtggg 2941 cagatgacac cagaagcgtg gactacaatg agaggcttga ttttgaagcg cccccgagtg 3001 tttggtcaag aatagtccca ttaggcactg gttgggggtt ttgggtttca tccaaccttc 3061 tgatcacaac aacacacgtc ctgcctaaag gggttaagga gctctttgga gttgaaatca 3121 agcaaatcca agttcataag tctggagagt tttgcaggtt caggttccca aggcctatca 3181 ggccagatgt cacagggctc gtgctggagg aaggcgcccc agaaggcact gtttgctcta 3241 tactcataaa aagacctaca ggtgagatga tccccttagc agtgaggatg ggcacacatg 3301 catccatgaa aatacagggt aggactgttg gtggccagat gggaatgctt ctcacaggag 3361 caaacgcgaa gaacatggac ctcggcaccg gtcctggtga ctgcggttgt ccttacatct 3421 acaaacgtgg caacgacatt gttgtcgcag gtgttcatac cgcagcagca agaggaggca 3481 acactgttat ctgtgccacc caagggcaag atggggaagc agtccttgag gggaatgagg 3541 gccttggcac ctattgcggc gccccaattc tgggccccgg caaggcacct aaactcagca 3601 cgaagaccaa gttttggcgt tcatcaccag atgccttgcc acctggcaca tatgaacctg 3661 cttacctagg gggtaaagac cctagagtgg aaaaaggtcc ttcccttcaa caagtcatga 3721 gagatcagtt gagacccttc acggaaccca ggggcaaacc acctaggcct gcagttttgg 3781 aggaagccaa aaagacagtg atgaatgttc tagaacaaac cattgacccc gccaagccat 3841 ggtcctactc gcaggcatgt gcctcactgg acaaaaccac ctctagtggt agtccccacc 3901 atgttaagaa aaatgaccac tggaatgggg agtccttcac tggcccactt gcagatcagg 3961 catctaaagc caacctcatg tatgagcagg ctaagcatgt gcagcccgtg tatacggccg 4021 cgctcaaaga tgagcttgtt aaaactgaca agatctacaa aaagataaag aagaggctcc 4081 tatgggggtc ggaccttggc acaatgatca ggtgcgccag ggcctttggt ggcctcatgg 4141 acagcatgaa ggcaagttgt atagctctcc cttgtagggt agggatgaac atgaatgaag 4201 atggccctat tatatttgac aaacattcta agtacaggta ccactatgat gctgactatt 4261 ctaggtggga ctcaacccaa caaaggaaca ttctttctgc cgccatggaa gtgatggtgc 4321 ggttctctgc tgaaccagaa ttggcacaag tggttgcaga ggacctttta gcacctagcc 4381 agcttgatgt tggcgatttt gtcatctcag tccaggaggg tctgccatca ggagtcccat 4441 gcacatcaca atggaattca atagcacact ggatcctaac tttgagtgca atggcagaag 4501 tgtcaggtct ctcaccagat gtcgtccaag ctcactcttg tttttccttt tacggggacg 4561 atgagatcgt cagtactgat atcaaccttg accccatgaa gttgacacag aaactcaggg 4621 agtatggtct ggttcccact cggcctgata aaactgaagg tccccttgtc ataactgaag 4681 acctcaccgg cctgacgttc ctccgtaggt cgattgctcg ggacccagct ggctggtttg 4741 gaaaactgga ccaagactca atccttaggc agctgtactg gacaaggggg cctaaccatg 4801 agaacccata cgagagcatg gttcctcatt ctcagcgggc cacacaactc atggcccttc 4861 ttggcgaggc ctcactacat ggtccccagt tttacaagaa agttagcaag atggtcatca 4921 atgagattaa gagtggtggt ctggagttct atgtgcccag acaagaggcc atgttcaggt 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgaaggtg 5041 tgaatgaaga tggcgtcgaa tgacgctacc ccatctgatg atggtgcagc cggcctcgta 5101 ccagagatca acagtgaggt tatggctctt gaacccgtcg ctggggcctc tcttgcagcc 5161 cctgtagtcg gtcaacaaaa tattattgat ccctggatta gaaataactt tgtacaagcc 5221 cctgctggtg aatttacagt ttcccctaga aactctcctg gagaacttct tcttgatttg 5281 gaattgggtc ctgaacttaa tccctatctt gcacatctgt ctaggatgta caatgggcat 5341 gcaggaggaa tggaagtgca gatagtactg gctgggaatg cgttcacagc tggtaagatt 5401 ctatttgctg ccatcccgcc tagcttcccc tatgaaaatt tgtcacccgc tcaattgact 5461 atgtgccccc atgtgatagt ggatgtgaga caattagaac cagtgctcct gccaatgcca 5521 gacataagaa atgttttcta ccattataat cagaacaatg gtcccaagct taggcttgta 5581 gctatgcttt atacccctct gagggctaac aactcaggtg atgacgtgtt cacggtgtct 5641 tgccgggttt tgacacgccc ttctccagat tttcagttca cttttctggt cccacctaca 5701 gttgagtcta aaactaagaa cttcaccctt cctgttctca gggtctcaga gatgacaaac 5761 tcaaggttcc ccgtcgtttt ggaccaaatg tacacaagca ggaatgaaaa catcattgtc 5821 caaccccaaa acggcaggtg tacgactgac ggtgagctac ttggcactac catcttacag 5881 tctgtgtcca tttgcaactt taaagggaca atgcaggcaa agctgaatga ggagccacga 5941 taccagctac aaatcaccaa cttggatgga tcacctatag atccaacaga tgatatgcct 6001 gctcctcttg gcacaccaga tttccaggcc atgttatatg gcgttgcaag ccaacgctct 6061 tccagtgaca atgccaccag ggcacatgat gcacagattg acactgcggg tgacacattc 6121 gccccgaaaa ttggccaggt tcggtttaaa tcaagctcta gtgattttga cctacatgac 6181 cctacaaaat tcacacctat tggagtcaat gtggatgacc agcacccttt cagacagtgg 6241 tccctgccaa actacggtgg gcaccttgcc ctgaacaatc acttagcccc agctgtgaca 6301 ccactcttcc ctggagagca gattttgttc tttaggtcat acatcccaag cgccggaggc 6361 cacacagacg gtgctatgga ctgcctgctg ccccaagagt ggatcgagca cttctatcag 6421 gaagcggctc cttcccaatc tgacatcgca ctggtaaggt tcattaaccc tgacacagga 6481 agagtgctct ttgaagctaa attgcacaaa caaggtttcc tcacaattgc agcatctggg 6541 gatcacccta ttgtgatgcc cactaatggt tatttcagat ttgaagcttg ggtcaacccc 6601 ttctatactc tcgcccccgt gggaactggg tctgggcgca ggaggattca ataatggctg 6661 gagctttcct cgcaggcttg gcaggtgacg ttgtgacttc cagcttgggc tcacttgtgg 6721 gcgctggagc caacgccatt aatcagaaag tggagtatga cttcaacaga cagctccagg 6781 aggcatcttt tagacatgat aaggatatgc tcaaagccca ggttgcagca accgcaggcc 6841 ttcaacaagc catgatagac atcaagcggg aggcattgac cgcaggcggc ttttcccccg 6901 cagatgctgc aagaggtgca gtcaaagcgc ctatgacaca gatccttgat tggaatggtt 6961 ccaggtattg ggctcctaac tctatgaaga caactggcta ttcaggtaca tttgtctccc 7021 aaggcattag aaattcccct catctgtcta atcaaactcc aagtgctgtt aaacctatta 7081 aacctttgct atctatatct agttcttcta gtgtatatag ttctccttct actgccccct 7141 cacaatcaac acaatcaaca acgctgtctg cagggacagg gtcctccaga cctaacactg 7201 tgtccacaaa gacctccaca ctgtcgagga caagtgactg ggtcagaggc caaaatgaga 7261 tgcttggccc gttcatgagt ggtgcactcc aaactgctta tgtcacgcca ccatcgagca 7321 gagcctcatc acaagggacg gtctcgaccg tgcccaaggc tgttttggac tcctggactc 7381 ccatgtttaa tacccacagg cagcctctct tcgcccattt gcgtaggcga ggggagtcac 7441 agatttagtg aaaaggat //