Typing tool
|
Complete norovirus genomes
MW305646 | GII.2 | ||
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GII.P16 |
ORF1: 1..5068 ORF2: 5049..6677 ORF3: 6677..7456LOCUS MW305646 7497 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate Arg15735 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305646 VERSION MW305646.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7497) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7497) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7497 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg15735" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="2017" /note="genotype: GII.2[GII.P16]" gene <1..5068 /gene="ORF1" CDS <1..5068 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ59274.1" /translation="VACNNNNDKEKSSGEGLFTNVSFTLKKALGARPKQPAPRDKPQK PPRPPTPELVKRIPPPPPNGEKEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVP PLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPL SLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQR TTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNI LATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA MVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVG TINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREVARKVASTLT GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRI ENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP DMWKDAFKQDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMD EFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRN VTIKRCQIIYAGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARIRYYVK CVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESDTKEEAPKSEDDEFII SSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR DRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTKKQRKEERATLGLVTGSEIRKRNPD DFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIP AGITEAFGVPTKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPT GELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGN DYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKT KFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLE AAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTGKLAD QASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFG GLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLASA LEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLL TLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDK TEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIP HSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDL STWEGDRNLAPNFVNEDGVE" mat_peptide <1..964 /gene="ORF1" /product="p48" mat_peptide 965..2062 /gene="ORF1" /product="NTPase" mat_peptide 2063..2593 /gene="ORF1" /product="p22" mat_peptide 2594..2992 /gene="ORF1" /product="VPg" mat_peptide 2993..3535 /gene="ORF1" /product="Pro" mat_peptide 3536..5065 /gene="ORF1" /product="RdRp" gene 5049..6677 /gene="ORF2" CDS 5049..6677 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59275.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG VISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6677..7456 /gene="ORF3" CDS 6677..7456 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59276.1" /translation="MAGAFVAGLAGDVLSNGLSSLVNAGANVINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLIAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTTPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVREQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 cgttgcttgc aacaacaaca acgacaaaga aaaatcttca ggtgaaggct tattcacaaa 61 tgtgtctttc accttaaaga aagccctcgg ggctaggccc aaacagcctg ccccgagaga 121 caaaccacaa aagcccccaa gaccaccaac tcccgagttg gtcaagagga taccccctcc 181 tccacctaat ggcgaaaaag aagaagaacc agtcattagg tatgaggtta agagtgggat 241 ctctggcctg cccgagctca caacagtccc ccaaccggac gtggccaaca cagcattcag 301 tgtcccacca ctgagcttga gagaaaacag ggaggctaag gaaccgctga caggggcaat 361 attagagatg tgggatggag agatatacca ctatggcctg tacgtggaga aaggcttagt 421 gttgggtgtg cacaaaccac ctgcagccat aagcatggca agagtggagc tgacgccgtt 481 gtcattgtac tggcgtgtgg tgtacactcc ccaatacctc atctcccctg aaactctcag 541 gaggctcaac ggagaggcat tcccttacac cgcctttgac aacaactgct atgccttttg 601 ctgctgggtg ttagacctca atgactcatg gcttagcagg aggatggtac aaagaacaac 661 gggcttcttc agaccttacc aagagtggaa cagaaaaccc ctgcctacca tggatgactc 721 caaaattaag aaggtagcaa atatattcct atgttcattg tccacactat tcaccagacc 781 cataaaagac ctcataggaa aaattaaacc attaaacata ttgaatatcc tggcaacgtg 841 tgactggact tttgccggaa tagtggagtc tctgatatta cttgctgaac tcttcggagt 901 tttctggaca cccccagatg tgtctgctat gatcgctccc ttactcgggg actacgagtt 961 gcaagggcca gaagacctcg ccgttgaact cgtacctgtg gtaatggggg ggattggttt 1021 ggtgttggga ttcaccaaag agaaaattgg caaaatgttg tcctcagcag catcaacact 1081 cagggcttgc aaagatcttg gtgcctatgg cttagagata ctcaaattgg tcatgaagtg 1141 gttcttccca aagaaagagg aggccaatga gctagccatg gtgagggcca tagaggatgc 1201 tgtactagac cttgaggcaa tagaaaataa ccacatgaca accctgttga aagacaaaga 1261 cagcttagca acatacatga aaacactgga catggaggag gagaaagcca ggaggttgtc 1321 cacaaaatct gcatcccctg acatagttgg gacaatcaac gccctgctgg ctcgaatagc 1381 agcggccagg tcattagtcc acagggccaa ggaagagcta tctagcagga tgaggccagt 1441 agttgttatg atatctggca aaccaggaat aggcaaaact catctggcca gggaggtggc 1501 aagaaaggtg gcatccactc tcacagggga tcaaagagtc ggactcatac cacgaaacgg 1561 tgtggaccat tgggatgcat acaagggtga gagagtcgtg ctgtgggacg actatggcat 1621 gagtaacccc attcatgatg ctcttcgcat acaagaattg gctgatacgt gtccccttac 1681 cttaaattgt gacagaattg aaaataaggg aaaagttttt gacagtgaag tcataataat 1741 tacaacaaac ctcgccaatc cagccccact tgattatgtc aactttgagg cctgctccag 1801 gagaattgat ttcctggtgt acgctgaggc accagaagta gaaaaggcaa aacgggactt 1861 tcctggtcag ccagatatgt ggaaggacgc cttcaagcag gacttttcac acatcaagct 1921 acagcttgca ccccagggcg gctttgacaa gaatggcaac accccacacg ggaaaggagt 1981 gatgaagacc ctcactaccg gttctctgat tgcccgtgca tcaggcctac tacatgagag 2041 gatggatgaa tttgaactcc aaggtcccac aatcaccacc ttcaatttcg accggaacag 2101 aatcacggca ttcagacaac tggctgcaga aaacaagtat ggattggtgg ataccatgaa 2161 agttggcaac caattaaaag gagtgaaaac catggaagaa ctcaaacaag caatcaggaa 2221 tgtgaccatc aagaggtgcc agatcatcta cgctggttcc acgtatgacc ttgaatctga 2281 tggcaagggc aaagttttgg tggaaaaggt caagaacacc tctgtacaga ccaacaacga 2341 gttggctggg gccctgcacc atctcaaaca tgcccgaatc aggtactatg tcaaatgtgt 2401 gcaagaagca gtctattcca tcatacaaat tgccggcgct gcgtttgtca ccacgcgcat 2461 tgcacgccgc atgaacatac aagagctctg gtcgaagcca caactagatc aaaatgaatc 2521 agatactaag gaagaggccc ccaagtcaga agatgacgag ttcatcatat cttctaagga 2581 catcaaggag gaaggaaaga agggcaaaaa caaaactggc cgtggcaaga aacacactgc 2641 attctccagc aagggcttga gcgatgagga gtatgacgag tacaagagga taagagaaga 2701 gagaaatggg aaatactcta tagaggagta tcttcaagac agagacaggt actatgagga 2761 gctcgccatt gccaaggcca cggaagaaga cttctgtgaa gaggaggaga tcaaaatccg 2821 tcagagaatc ttccgtccca ccaagaaaca aagaaaggaa gagagggcca cattaggact 2881 agtaacaggt tcagaaatca gaaagagaaa ccctgatgac ttcaaaccca aagggaagct 2941 gtgggccgat gacaacagga gtgttgacta caatgagaaa ctggactttg aggccccccc 3001 aagcatatgg tctaggattg tgagctttgg ttctggatgg ggcttctggg tgtcaccaag 3061 ccttttcata acatcaactc atgtaatccc cgcaggcata acagaagcat ttggagtccc 3121 caccaaacaa attcagatcc acaaatcagg cgaattttgc cgattcagat tcccaaaacc 3181 aattaggcca gatgtgacag gaatgatctt ggaagaaggt gcgcctgagg gcaccgtggc 3241 aacagtgctc atcaaacgcc ccaccggaga gctcatgcct cttgcagcca gaatgggaac 3301 acacgcaacc atgaaaattc aaggccgcat ggttggcgga cagatgggta tgttgctcac 3361 tggatcaaat gctaaaggaa tggacttggg aacaactcct ggtgactgtg gctgtcctta 3421 tatctataaa aggggcaatg actatatagt cattggggtg cacactgcag cagcccgtgg 3481 tggaaacact gtcatctgtg ccacacaggg aagtgagggt gaggcaactc ttgagggtgg 3541 agatgacaaa ggaacatact gtggggcacc cattctaggc cctgggggtg caccaaaatt 3601 gagcaccaaa accaaatttt ggaggtcatc gaacacgccc cttccaccag ggacatatga 3661 gcctgcctat ctcggtggcc gtgatccgcg tgttaagggt gggccttccc tgcagcaggt 3721 aatgagagat cagttgaagc cattcactga acccaggggc aaacctccaa gaccaagtgt 3781 attggaagca gccaaacaaa ccatcatcaa tgtcctcgaa caaaccctgg accctccaca 3841 aaaatggaca tacgcacagg cgtgtgcctc acttgacaaa accacctcca gtgggcaccc 3901 ccatcacgtc cgaaagaatg aattctggaa tggtgagacc ttcactggta aactggcaga 3961 ccaagcatca aaagcaaatc taatgtttga ggaagggaaa cacatgacac cagtgtacac 4021 agcagcactc aaggacgagc tagtcaagac tgagaaaatc tatggaaaga tcaagaagag 4081 actgctctgg ggctctgact tgtccaccat gatccggtgc gctaggtcat ttggtgggct 4141 catggacgag atgaaggcac actgcatatc acttccagtc cgagttggca tgaatatgaa 4201 tgaagatggc ccaataatat tcgagaaaca ttccagatac aaatatcact atgatgcaga 4261 ctactctcgt tgggattcaa cacaacagag ggcagtacta gcatcagcct tggaaatcat 4321 ggtcagattc tctgcagaac cacaattggc acaaatagtc gctgaggatc tgctggctcc 4381 tagtgtagta gatgtaggag actttaaaat tacaataaat gaagggctcc cttctggtgt 4441 gccatgcact tctcaatgga actccatcgc acactggctg ctaactctct gtgccttgtc 4501 tgaagtcacc aaactatccc ctgacattat acaggcaaat tccatgttct cattttacgg 4561 tgatgacgag attgtcagca ccgatataaa attggaccct gaacagttaa ccgccaaatt 4621 gaaggagtac ggcctgaaac caacccgccc agacaaaacc gagggacccc tgattatcag 4681 tgaagatttg aacggtctca ctttcctccg aaggacggtg actcgtgacc cagctggctg 4741 gtttggaaaa ctggaccaaa gctcaatttt gaggcagatg tactggacta gaggaccaaa 4801 tcatgaagac cccaatgaga caatgatacc ccattctcaa agacccatac agctcatggc 4861 actgcttggt gaagcctctc ttcacgggcc ctctttctac agtaaaatca gtaaattggt 4921 cataactgaa ctcaaagaag gtgggatgga cttttacgtg ccaaggcagg aacccatgtt 4981 caggtggatg aggttttctg acttgagcac gtgggagggc gatcgcaatc tggctcccaa 5041 ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc tactgatggt gcagccggcc 5101 tcgtgccaga aagtaacaat gaggtcatgg ctcttgaacc cgtggctggt gccgccttgg 5161 cagccccggt caccggtcaa acaaatatta tagacccttg gattagagca aattttgtcc 5221 aggcccccaa tggtgaattt acagtctctc cccgaaatgc ccctggtgaa gtgctactaa 5281 atctggagtt gggtccagaa ttaaatcctt atctggcaca tttagcaaga atgtacaatg 5341 ggtatgccgg tgggatggag gtgcaggtca tgttggctgg gaacgcgttc acagccggca 5401 agttggtctt cgccgccgtg ccaccccact tcccggttga aaaccttagc ccacagcaaa 5461 tcaccatgtt ccctcatgtg atcatagatg tgagaacctt ggaacctgtt ttattaccac 5521 tccctgatgt taggaataat ttcttccatt ataatcagaa agatgatccc aagatgagaa 5581 tcgtggctat gctttacacc cccctcaggt ctaatggttc aggtgatgat gtgtttacag 5641 tctcctgtag ggtgttgact agaccttccc ctgactttga cttcacatac ctggtgccac 5701 caacagtgga gtctaaaaca aagccattca ccctcccaat cctcacactt ggggaacttt 5761 ccaattctag gttcccagtg tctatagacc agatgtacac cagccctaat gaagttatat 5821 cagtacagtg tcaaaatggt aggtgcacac tggacgggga gctccaaggg acaacacaac 5881 tccaggtcag tggcatttgt gctttcaaag gtgaagtgac cgcccacttg catgacaatg 5941 atcacctata caatgttacc atcacaaact tgaatgggtc cccttttgat ccctccgagg 6001 atatccctgc ccctctgggt gtgcctgact tccagggaag ggtttttggt gtcatctccc 6061 aaagagacaa acacaatagt cccgggcaca atgaaccagc aaacagggga cacgacgctg 6121 tggtccctac ttacacagca cagtatactc caaaactggg acaaattcaa attggcacat 6181 ggcaaactga cgaccttaca gtcaaccaac cagtcaaatt caccccagtt ggactcaatg 6241 acaccgaaca ttttaaccaa tgggtggtcc ctaggtatgc tggtgcccta aacctcaata 6301 caaaccttgc cccttctgtt gctccagtat ttccaggaga gcgcttactc ttctttagat 6361 catatattcc cctcaagggt ggttatggaa acccagccat tgattgccta ctaccacaag 6421 agtgggtgca acacttctat caggaagcag ccccttcaat gagtgaggtg gccctcgtca 6481 gatacatcaa cccggacact ggtcgggcac tgtttgaggc caagctccac agagctggtt 6541 tcatgacagt ctcgagcaac accagtgccc cggtggttgt gcctgccaat ggatacttca 6601 gatttgattc ttgggtgaac caattttatt ctctcgcccc catgggaact gggaatgggc 6661 gtagaagggt tcaataatgg ctggagcttt tgtagctggt cttgcagggg atgtgctcag 6721 caatgggctt agttcattag ttaatgcagg tgctaatgta ataaatcaga gggcagaatt 6781 tgattttaat cagaaattgc agcaaaattc ttttaatcat gataaggaga tgttgcaggc 6841 tcagattcag gcaactaagc agctgcaggc agacatgatg gctataaaac aaggggtctt 6901 gatcgctggc ggcttttccc ctgctgatgc agccagaggt gctgtgaacg cgcccatgac 6961 acaggcgctg gattggaatg gcacaaggta ttgggcacca aactccatga ggaccacatc 7021 ttattctgga aaattcacat cgaccacccc agtgaggcag gctgacttcc agcacaccca 7081 aagccggcct tcgagtggct cctctgtgtc ttcctttgcc acccagtctt caaggccaac 7141 tctgaccaca accactggtt cctcacatgg cacagcctca tcaaattcaa ctcgcagcac 7201 aagcctctcc caatcaacgg tctccagagc cacatctagg actggtgagt gggttagaga 7261 acaaaataga aatttggaac cctacatgca tggtgcctta cagacagcct ttgtcacccc 7321 gccttccagc agggcatctg acgggacagt ctcaaccgtc ccgaaaggtg ttttggactc 7381 ctggacacct gcgtttaaca cccgcaggca gccgcttttt gcacacctcc gtaagagggg 7441 ggagtcacaa gcttagtgaa aaggtgaaaa tttatttagg atgaattgat tttacct //