Typing tool
|
Complete norovirus genomes
MW305628 | GII.1 | ||
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GII.P33 |
ORF1: 1..5075 ORF2: 5056..6663 ORF3: 6663..7436LOCUS MW305628 7463 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate Arg13802 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305628 VERSION MW305628.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7463) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7463) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7463 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg13802" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="2015" /note="genotype: GII.1[GII.P33]" gene <1..5075 /gene="ORF1" CDS <1..5075 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59220.1" /translation="AAATSNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPPRETEQK QKPPRPPTPELIKKIPPPPPNGEDDIVVSYSAKDGVSGLPELSTVRQPDGTNTAFSVP PLNQRENKDAKEPLPGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPL SLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR TTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLRPLNILNI LASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFPKKDEANELA MVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLSTKSASPDIVG TINSLLARIAAARSLVHRAKEELSSRSRPVVVMISGKPGIGKTHLARDLAKKVAATLT GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPILDALRLQELADTCPLTLNCDRI ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFPGQP DMWKDAFRSDFSHIKLMLAPQGGFDKNGNTPHGRGVMKTLTSGSLIARASGLLHERLD EYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLVDTMRVGSQLKNVKTVSELKQALKN ISIRRCQIVYGGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHHLRCARIRYYVK CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKDGCPKPKDEEEF VISSEDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ DRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLVTGSEIRKRN PDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV IPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR PTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR GNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILGPGNAPKLST KTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSV LEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNEHWNGESFTGKL ADQASKANLMFEEGKHMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARA FGGLMDELKAHCVTLPIRVGMNMNEDGPIIFGKHSRYTYHYDADYSRWDSTQQRAVLA AALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHW LLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRP DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETM IPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFS DLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2600 /gene="ORF1" /product="p22" mat_peptide 2601..2999 /gene="ORF1" /product="VPg" mat_peptide 3000..3542 /gene="ORF1" /product="Pro" mat_peptide 3543..5072 /gene="ORF1" /product="RdRp" gene 5056..6663 /gene="ORF2" CDS 5056..6663 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59221.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTPFDPTEDVPAPLGTPDFLANIYG VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEEHDLDLNQPTRFTPVGLYDT NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6663..7436 /gene="ORF3" CDS 6663..7436 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59222.1" /translation="MAGAFVAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRYWAPGATKTTAFSGGFTSSPNTRTVDLPRKTSTTPAPTPISRPSSSASTVSTRSTI VSGTSGLSSLTRSSFNSQPTSSSSRTSEWVRSQNKALEPYMRGALQTAYVTPPSSRAS SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV" ORIGIN 1 ccgctgctgc taccagcaac aacgacatcg caaaatcttc aagtgacgga gtactaagta 61 gtatggccgt cacttttaaa cgagccctcg gggcccggcc taaacagccg cccccgaggg 121 aaacagaaca aaaacaaaaa cctccacgac cgcccacccc ggagttaatc aaaaagattc 181 cacctccccc gcccaacggg gaggacgata tagtggtatc ctatagtgcc aaagatggtg 241 tctccggtct gcctgagcta tccaccgtca ggcagccaga tgggacaaac acagcattta 301 gtgtcccccc actcaaccag agggaaaaca aagatgctaa agaaccgctg cctggcacca 361 tcttggaaat gtgggacgga gagatttacc actacggctt gtacgtggag cggggcttgg 421 tgcttggggt gcacaaacca ccagcggcta ttagccttgc aaaggttgaa ctaacaccac 481 tgtctctgta ctggagacca gtgtacaccc ctcagtacct catatccccg gaaactctca 541 aaaagctaca tggagagaca ttcccttaca cggcctttga taacaactgt tacgcctttt 601 gttgctgggt cttggatcta aatgactctt ggctcagcag gaggatgata cagagaacaa 661 ctggcttctt cagaccctac caggactgga acaggaaacc tctccccacc atggatgatt 721 ccaaattgaa aaaggtggct aatatagtcc tgtgtgcatt gtcatcacta ttcaccaggc 781 ccattaagga cataatagga aaactaaggc ccctaaacat actcaatata ctagcttcct 841 gtgactggac tttcgcagga atagtagaat ccctaattct ccttgcagaa ctcttcggag 901 ttttctggac acccccagat gtgtctgcga tgatcgcccc cttactaggc gactacgaac 961 tacagggacc tgaagatctc gctgtggaac tcgtaccagt agtaatgggg gggataggtt 1021 tggttctagg tttcaccaag gagaagattg gcaagatgct atcatctgcc gcgtccaccc 1081 tcagagcttg taaagacctt ggagcatatg gattggaaat tctaaaattg atcatgaagt 1141 ggttcttccc gaagaaagat gaggcgaatg aacttgcaat ggtgagatcc attgaggatg 1201 cagtgctaga ccttgaagca attgagaaca atcacatgac caccctactc aaagacaaag 1261 acagcttagc aacctacatg aagactctgg accttgagga ggagaaagct aggaaactct 1321 ccaccaaatc cgcttctcct gatattgtgg gcacaatcaa ttcacttctg gcacggattg 1381 cagctgcccg ttccctggta catcgggcaa aagaagagct ttccagtagg tcaagacccg 1441 ttgttgtcat gatatcagga aaaccaggga tagggaaaac ccaccttgcc agagatttgg 1501 caaagaaagt tgcagccacc ctcacaggag accagagggt gggcctcatc ccacggaatg 1561 gtgtcgatca ctgggatgcg tacaaaggtg agagagtcgt cctttgggat gactatggaa 1621 tgagcaaccc catcctcgac gccctcaggc tacaagaact tgctgacact tgtcccctaa 1681 cattaaattg tgatagaatt gagaataaag gaaaggtctt tgacagtgat gccataatta 1741 tcacaactaa tctggctaac ccggcaccac tggactatgt taattttgaa gcatgttcga 1801 ggcgcatcga cttcctagtg tatgctgatg cccccgatgt tgaaaaagca aaacgcgact 1861 tcccagggca gcctgacatg tggaaggacg cttttagatc tgacttctca cacataaaat 1921 tgatgttggc tcctcagggt ggttttgata agaatggcaa caccccacat ggaagaggtg 1981 tcatgaaaac cctcacatct ggctccctca ttgcccgtgc ttcaggactc ctccacgaaa 2041 gactggatga gtacgaatta caagggccaa cacccacaac cttcaatttc gaccaaaaca 2101 aggtgttcgc ctttagacag cttgccgctg aaaataagta cgggctggtg gacaccatga 2161 gagtgggaag ccagctcaag aatgtcaaga ctgtgtcaga gctcaaacag gcacttaaga 2221 acatttcaat tagaaggtgc cagatagtct atggtggtct cacctattca cttgaatctg 2281 atggcaaagg taatgtgagg gttgagaagg tgcaaagtcc agctgtgcag accaacaatg 2341 agctaactgg cgcactgcac cacctgaggt gcgctaggat tagatattat gttaagtgtg 2401 tccaggaagc tttgtattcc atcatccaaa ttgctggagc cgcgtttgtc accacgcgca 2461 ttgcaaagcg catgaacata caaaacctct ggtccagacc acaggtagag gatgaggaag 2521 agaccaccag caaagacggg tgcccaaaac caaaggatga ggaggagttt gtcatctcgt 2581 ctgaagacat caaagctgaa ggtaagaagg gaaagaacaa gtctggccgt ggcaagaaac 2641 acacagcctt ctcgagtaag ggtcttagtg atgaggagta cgatgagtac aagagaatca 2701 gagaagaaag aaatggcaag tactccatag aagaatacct ccaagacaga gacaagtact 2761 atgaggaggt tgccatagcc agggctactg aagaggactt ctgtgaggaa gaagaggcca 2821 agatccggca gaggattttc agaccaacaa ggaaacaacg caaggaggag agggtttcac 2881 tcggactggt cacaggctca gaaatcagga aaaggaaccc ggatgacttc aaacccaaag 2941 gaaagttgtg ggctgatgac gacaggagtg tcgattacaa tgaaaaactc agttttgaag 3001 cccccccaag catctggtcg agaatagtca actttggatc aggttggggc ttctgggtct 3061 caccaagcct ttttataaca tccacccatg tcatacctca aggggcacaa gagttcttcg 3121 gtgtctccat caaacagatc caaattcata agtcaggtga gttctgccga ctaagattcc 3181 caaagccaat cagaactgat gtgacaggta tgatcctaga ggaaggggcc cctgaaggca 3241 ctgtggccac actgctcata aagaggccaa ctggagagct gatgcctcta gcggctagaa 3301 tgggcaccca tgcaactatg aagatccaag gccgaactgt cgggggacag atggggatgc 3361 tcctgacagg atccaacgcc aagagcatgg atttgggcac tacaccaggt gactgtggat 3421 gcccatatat ctacaaaaga ggaaatgact acgtggtcat tggggtccac acagctgccg 3481 cccgcggagg gaacactgtt atctgtgcaa cccaaggaag tgagggcgag gccgttcttg 3541 aaggtggtga caacaaaggc acctattgtg gcgccccaat cctaggtcca ggaaatgccc 3601 ccaaactcag tactaaaacc aaattctgga ggtcctcaac agcaccactc ccacctggca 3661 catatgaacc agcttacctc ggaggtaaag accccagggt gaaaggtggt ccctcattac 3721 aacaagttat gagagaccaa ttgaaaccgt tcacagaacc cagaggtaag ccaccaaagc 3781 ctagtgtatt ggaagcagcc aaaaagacaa tcattaatgt ccttgagcaa actatagatc 3841 caccccagaa atggacgttc gcacaggcgt gcgcatccct tgacaaaaca acctctagtg 3901 gctacccgca ccacgtgcgg aagaatgaac attggaatgg ggaatctttt acagggaagt 3961 tggctgacca ggcttcaaag gctaatttga tgtttgagga aggaaaacac atgacaccag 4021 tctatacagg agctctcaag gatgagttag tcaaaactga caaaatatat ggtaagatca 4081 agaaaaggtt attatggggc tcagatctgg caaccatgat tcgttgcgct cgagcgttcg 4141 gagggttgat ggatgaactc aaggcccact gtgtcacact ccccatcagg gtggggatga 4201 acatgaatga ggatggaccc atcatttttg ggaaacactc taggtacacc taccattatg 4261 atgcagacta ctctcgatgg gactcaacac agcagagagc tgttttagct gcagccctag 4321 agatcatggt aaagttttcc ccagaaccac acctggctca aattgtcgca gaagatctcc 4381 tatctcccag cgtgatggac gtgggcgatt tcaaaatatc aatcactgaa ggactcccct 4441 ctggggtgcc ttgcacctca caatggaact ccattgctca ttggcttctc acgctctgtg 4501 cgctctctga ggtaacagat ttatctcctg acatcatcca agcaaactca ctcttctctt 4561 tctatggtga tgatgaaatt gtgagcacag acattaaatt agatccagaa aggctaacag 4621 ccaaactaaa agagtatggt ctcaagccaa cccgcccgga caagactgaa gggcctttgg 4681 tcatttctga ggacttagat ggtctgacct ttctgcggag aactgtgacc cgtgatccag 4741 caggttggtt tggaaaattg gaacaaagct caatactaag acagatgtat tggaccaggg 4801 gccccaatca tgaagacccc tctgaaacaa tgataccaca ttcccaacga cccatacagt 4861 tgatgtccct attgggtgaa gctgcattgc atggcccatc gttctacagc aaaatcagca 4921 aattggtcat ctcagaattg aaagaaggtg gcatggactt ttacgtgcca agacaagagc 4981 caatgttccg gtggatgagg ttctcagact tgagcacgtg ggagggcgat cgcaatctgg 5041 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgca 5101 gccggtctcg taccagaggt caacaacgag acgatggcac ttgagccggt ggctggggct 5161 tctatagctg cccctttaac cggccaaaat aatgtgatag acccctggat tagaatgaat 5221 tttgtccaag ctccaaatgg tgaatttaca gtgtcccccc gtaattcccc aggtgaagtg 5281 ttgttgaatt tggaattagg ccctgaacta aatccattcc tggcacacct ttcaagaatg 5341 tataatggtt atgctggtgg ggttgaagtg caggtgctac ttgctgggaa tgcgttcaca 5401 gcaggaaaac tagtgtttgc agcaatcccc ccacatttcc ctcttgagaa tctgagtcct 5461 ggtcaaatta caatgttccc tcacgtgatt attgatgtta gaactttaga acctgtcctc 5521 ttgcctttac cagatgttag aaataatttc tttcattata atcagcagcc tgagccccgt 5581 atgagacttg tggctatgtt gtatactcct cttagatcta atggctctgg tgatgatgtg 5641 ttcacagtct cttgtagggt cctcacccgc ccctctccag actttgattt taattacttg 5701 gttcccccaa ctgtggaatc taaaaccaaa ccatttaccc tgccaatatt gaccattgga 5761 gaattgtcaa attctaggtt cccagtgcca atagatgaat tgtataccag ccccaatgaa 5821 ggagtggttg tgcaacctca aaatggcaga tcaacactcg atggtgaact gcttggtacc 5881 acacaacttg taccatcaaa catctgtgcc ttgcgagggc gcatcaacgc ccaagtgcca 5941 gacgaccacc atcagtggaa cttgcaggtt acaaacgcaa atgggactcc cttcgacccc 6001 actgaagatg tccctgcacc attgggcacg ccggatttct tggcaaacat ctacggagtt 6061 actagccaga ggaaccctga caacacttgc cgtgcccatg atggggtctt ggcaacctgg 6121 agccctaaat tcacacccaa gttaggatct gtggttttgg gtacttggga agaacatgat 6181 cttgatctca accaacctac cagattcaca cctgttggtt tgtatgatac aaaccacttt 6241 gatcagtgga ttctacccaa ctactctgga agattgacct taaacatgaa tttggcgccc 6301 tccgttgctc cccttttccc aggtgaacaa atactcttct ttaggtccca cataccactt 6361 aaaggaggca cttccaacgg tgccattgac tgtctactcc ctcaggagtg gatccagcat 6421 ttctatcagg aatcagcccc gtcacccaca gatgttgctc tgattaggta caccaaccct 6481 gacacgggcc gtgtcctttt tgaggccaaa ctacatagac agggattcat cacagtagca 6541 aattctggtt ctagacctat tgttgtcccc cctaatggtt attttaggtt tgattcttgg 6601 gttaatcagt tttactctct cgcccccatg ggaactggga atgggcgtag aagggtgcag 6661 taatggctgg agcttttgta gcaggtcttg ccggtgatat agtcaccaat agcattggtt 6721 cacttgtgaa cgctggagcc aatgcaataa accaaaaagt agactttgaa aacaacaaac 6781 aactacagca ggcctctttc aaccatgata aggaaatgtt gcaagctcaa attcaggcca 6841 caaaacaatt acaggctgac atgattgcgc tcagacaagg ggtgttgact gcaggcggct 6901 tctcccctac tgatgcagca agaggggcgg ttaatgcgcc catgacgcaa gtcttggact 6961 ggaatgggac taggtactgg gcccccggag ccaccaaaac aactgccttc tccggtgggt 7021 tcacaagctc tcccaatacc aggactgttg atttgcctag gaaaacgtca accacaccag 7081 cccccacacc tatatctaga cctagttctt ctgcttctac tgtttctacc cgctcaacaa 7141 ttgtcagcgg gacttctggc ctttcttctt tgactaggag ctcttttaat tcccagccca 7201 cctcctcttc ttctcggact agcgaatggg tgcgtagtca aaacaaggcg ctggagccct 7261 acatgagggg agcgctgcaa actgcttacg tgacgcctcc ctctagtaga gcatccagca 7321 atggcacagt ctcaaccgtg ccaaaagaag ttttggactc ctggacatct gtgttcaaca 7381 cccacagaca accgcttttc gctcatctcc gtcggagagg ggagtcacag gtttagtgaa 7441 aagatgattt ttcttccact ctt //