Typing tool
|
Complete norovirus genomes
MW305606 | GII.7 | ||
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GII.P7 |
ORF1: 1..5034 ORF2: 5015..6637 ORF3: 6637..7410LOCUS MW305606 7468 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate Arg4416 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305606 VERSION MW305606.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7468) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7468) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7468 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg4416" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="2004" /note="genotype: GII.7[GII.P7]" gene <1..5034 /gene="ORF1" CDS <1..5034 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QPJ59154.1" /translation="SNDATPSNKEEAGAFSNIKVGFKKMLGAVPKGTKAPSSGQHCPT VKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYTVPPLSEREH RPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELTPISLYWRPV YTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCISRTTGFFKP YQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWT FAGIVETVILMAELFNVFWTPPDVSNFVASLIGDFELQGPEDLAVELVPVVMGGIGMV LGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMETLRAIED AVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGTINAILA RIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTMSGDQRVGL VPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCDRIENKGKMF DSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHF KPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGN DLQTYNFDTNRVSAFRKLAADNKYGVMETMRVGAALKNVKTLEDLKVALRDVKFNECE IIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSALLRLRQARARYYISCFQDLVY TLIQVAGASFVVNRISRRFCWERWVKPTETQEVNESEKEVVQDRWEIEPKDTGPEGKK GKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVAR ATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWAD DTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEI KQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGEMIPLAVRMG THASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAA ARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALP PGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEAKKTVMNVLE QTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQ AKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCI ALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEP ELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGL SPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDL TGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMAL LGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAP EGVNEDGVE" mat_peptide <1..942 /gene="ORF1" /product="p48" mat_peptide 943..2040 /gene="ORF1" /product="NTPase" mat_peptide 2041..2559 /gene="ORF1" /product="p22" mat_peptide 2560..2958 /gene="ORF1" /product="VPg" mat_peptide 2959..3501 /gene="ORF1" /product="Pro" mat_peptide 3502..5031 /gene="ORF1" /product="RdRp" gene 5015..6637 /gene="ORF2" CDS 5015..6637 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59155.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDSSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 6637..7410 /gene="ORF3" CDS 6637..7410 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59156.1" /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPMQSAPYVNNQNRQLLKVDPSLPSSSGSSVSSVKTQ STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 agtaacgacg ccaccccttc taacaaagaa gaggctggtg cattctccaa catcaaagtt 61 ggattcaaga aaatgctggg tgccgtaccc aagggtacca aagcacccag cagtggtcaa 121 cattgcccca cagttaagat cgggcctaaa acattaacaa tcccccctga gcccccaaat 181 ggtgaagaca ccgtacagtt tgatgcaaag tcagaaacta taattgggct accggacttg 241 acaacggtgc aaaacgaaca cgaaaacacc ccatacactg tccctccatt aagtgagagg 301 gagcacagac cggccactga accacttcct ggcacaatat tggagatgtg ggatggtgag 361 ttttaccatt actccgtgta cgtcagcgac ggtaaagctc tgggggtcca caaaccaccg 421 gcggctataa gcctcgcgac gatagagctc acccccatat cactttattg gaggcccgtt 481 tataccccca attatttggt ctccccggac acattaaagg gcctcgctgg tgagaagttc 541 ccctacacgg ccttcagtaa caactgttat aacttctgct gctgggtgct tgagctcaac 601 gacacgtggc ttaacagaag atgcatttcc agaaccaccg gattcttcaa accataccag 661 tcttggaaca ggaaacctct cccaaccgtt gatgatggaa agatcaaaaa ggtggccaac 721 gcgatcctct gtgcactcgg ctcgctgttt tcaaaaccaa tcaaagatct gttaggcaaa 781 ctcaagccat tgaatctact acacttgctt gcgtcttgtg attggacgtt tgcgggtata 841 gtggagacag tcatcttaat ggcggaactt tttaatgtct tctggacccc gccagatgtc 901 tctaattttg tagcctccct gataggtgat tttgaattgc aagggcctga ggacctggct 961 gtggagctcg ttcccgtggt tatgggtggt ataggaatgg ttctcggttt taccgctgag 1021 aagataggcc gcatgctgtc gtccgctgca tcaacattgc gggcgtgcaa agacctaggg 1081 aactatgccc ttgacatact caaattggtc atgaagtggt tcttcccaaa gaaggaagag 1141 aaagctgaga tggaaacctt gagggcgatt gaagatgccg tcctagatat ggaagctata 1201 gggaataacc acctcacaac ccttctcaag gacaaagaca gcctcacggc ttttatgaag 1261 accctggacc tagaagagga gaaggccagg aaactgtcca ctaaatcatc ttcaccggac 1321 atagtcggca ccatcaatgc catactagct aggatagctg ctgctagatc ccttctacat 1381 aaggccaaag aagagatgtt cagcaggatc agaccagtgg tcgttatgat ctcaggcaga 1441 cctggcattg gaaaaaccca catggcgaga catttggcta agagcatcgc caacaccatg 1501 agtggcgacc agagagtcgg gctcgttccg cgcaacggtg tcgaccactg ggacgcctac 1561 aggggagaga gggtggtcct gtgggacgac tatggtatgg ggagccctgt taaagacgcc 1621 ctaacactac aagagctggc cgacacatgt ccagtcactt taaattgtga taggattgag 1681 aataagggga agatgtttga cagtgatgtc atcataatca cgaccaacct agtcaacccc 1741 gcgcccctcg actatgtgaa cttcgaggcg tgttctagga gagttgactt cctggtctat 1801 gcagagtcac cagaaattga aaaggtcaag agagacttcc ctggccagcc tgacatgtgg 1861 aaagaccatt ttaagccaga cttttcccac atcaagctga ctctagcccc ccagggtggg 1921 tttgacaaaa atggcaacac cccacacggc aagggcacca tgcggtccct aacccagggg 1981 tccctgactg cgagagttgc aggccttgtc catgagagga gagatgagtt ccagctccaa 2041 ggaaatgacc tccaaacata caactttgac accaacagag tctccgcatt caggaaattg 2101 gctgcagata acaagtatgg ggtcatggag acgatgagag tgggtgcggc actcaagaat 2161 gtgaagacct tggaagatct caaagttgca ttgagggatg tgaaattcaa tgagtgtgaa 2221 ataatttata agaactctaa gtatcgagtc tcttccaacg gtaaaggctc agtttctgtt 2281 gacaaagttg aggacaatgc atcccagact gtaaacgagg tacaatcagc acttctcagg 2341 ctcaggcaag cgagggccag gtattacatc agctgcttcc aagacctcgt ctacactctc 2401 atacaggttg ccggagcatc attcgttgtc aacaggatct ccagaaggtt ctgctgggaa 2461 aggtgggtca aaccaaccga gacccaggag gtgaatgagt ccgaaaagga agtggttcaa 2521 gatagatggg aaattgagcc caaggataca ggaccagaag gcaagaaggg taagaacaag 2581 aaaggaaggg gtaagaaaca cacagctttc tctagcaaag gcctgagtga tgaagagtat 2641 gacgagttca agagaatcag ggaagaaagg aacggaaagt actccattga ggaatacctg 2701 caagaccgag accgctatta tgaagaagtg gcagttgccc gggcgacaga ggaggacttc 2761 tgtgaagagg aagaggccaa aataagacaa aggattttcc gcccgacaaa gaaacagagg 2821 aaggaggaaa ggggtgtgct tggcttagtc accggttcag acatcagaaa gaggagacca 2881 gacgattttc aaccaaaagg caacctatgg gcagatgaca ccagaagtgt ggactacaat 2941 gagaggcttg attttgaagc gcccccaagt gtttggtcaa gaatagtccc attaggcact 3001 ggttggggat tctgggtttc atccaacctt ctgatcacaa caacacacgt cctgcctaaa 3061 ggggttaagg aactctttgg agttgaaatc aagcaaattc aagttcataa gtctggagag 3121 ttttgcaggt ttaggttccc aagacctatc aggccagatg tcacaggact cgtgctggag 3181 gaaggcgccc cagagggcac tgtttgttct atactcataa aaaggcccac aggtgagatg 3241 attcccttgg cagtgaggat gggcacacat gcatccatga aaatacaggg caggaccgtt 3301 ggtggccaga tggggatgct tctcacagga gcaaacgcga agaacatgga tctcggcacc 3361 ggtcctggtg actgcggttg tccctacatc tacaaacgtg gcaatgacat tgttgtcgcg 3421 ggtgtccata ccgcagcagc ccggggaggc aacactgtca tatgcgccac ccaagggcaa 3481 gatggggaag cagtccttga gggaaatgag gaccttggta cctactgtgg cgccccaatt 3541 ctgggccctg gcaaggcgcc taaactcagc acgaagacca agttttggcg ctcatcacca 3601 gatgccttgc cacctggcac atatgagcct gcttacctag gaggcaaaga ccccagagtg 3661 gaaaaagggc cctccctgca gcaagtcatg agagaccagt tgagaccctt cacagaaccc 3721 aggggcaaac cacctagacc tgcagtctta gaagaagcca aaaagacagt gatgaatgtt 3781 ctagaacaaa ccattgaccc cgccaagcca tggtcctatt cgcaggcatg tgcctcactg 3841 gacaaaacca cctctagtgg tagtccccat cacgttaaga aaaatgacca ctggaatggg 3901 gagtccttca ctggtcccct tgcagatcag gcatctaaag ccaacctcat gtatgagcag 3961 gctaagcatg tgcagcccgt gtacacggcc gcgcttaaag atgagcttgt taagactgac 4021 aagatctaca aaaagataaa gaagaggctc ctatgggggt cggaccttgg cacaatgatc 4081 aggtgcgcca gggcttttgg tggtctcatg gacagcatga aggctagttg tatagctctt 4141 ccatgcaggg tgggaatgaa catgaatgaa gatggcccca tcatatttga caaacattct 4201 aagtacaggt accactatga tgctgactat tctaggtggg actcaaccca acaaaggagc 4261 attctttctg ccgccatgga agtgatggtg cggttttctg ctgaaccaga attggcacaa 4321 gtggttgcgg aagacctttt ggcacctagc cagcttgatg ttggcgattt tgtcatctca 4381 gtccaggagg gtctgccatc aggagtccca tgtacatcac aatggaattc aatagcacac 4441 tggatcctaa ctttgagtgc aatggcagaa gtgtcaggtc tctcaccaga tgttgtccaa 4501 gctcactctt gtttttcatt ttatggggac gatgagatcg tcagtactga tatcaacctt 4561 gaccccatga agttgacaca gaaactcagg gagtacggtc tggtccccac ccggcctgat 4621 aaaactgaag gtcccctcgt cataactgaa gacctcaccg gcctgacgtt ccttcgcagg 4681 tcgattgctc gggacccagc tggttggttt ggaaaattgg accaagattc aatcctcagg 4741 caactgtact ggacaagggg gcctaaccat gagaacccgt acgagagcat ggttcctcat 4801 tctcagcggg ccacacagct catggccctt cttggtgagg cctcactgca tggtccccag 4861 ttttacaaga aagttagcaa gatggtcatc aatgagatta agagtggtgg tctggagttt 4921 tatgtgccca gacaagaggc catgttcagg tggatgagat tctctgacct cagcacatgg 4981 gagggcgatc gcaatctagc tcccgaaggt gtgaatgaag atggcgtcga atgacgcagc 5041 tccatctaat gatggtgcag caggcctcgt accagagatc aacaatgagg tcatgcccct 5101 tgagcccgtg gctggtgcat cgctggcgac accagttgtc ggacaacaaa atataattga 5161 tccctggata agaaataatt ttgtacaagc tcctgcaggt gagtttacag tctcccctag 5221 aaattctcct ggtgaaattt tgcttgattt ggagttggga ccagaattga acccctacct 5281 tgctcatctg gcccgtatgt acaatgggca cgctggtggt atggaagtgc aaattgtgtt 5341 ggctgggaat gcgttcacag ctggcaagat catatttgct gccatccctc cagggttccc 5401 atatgaaaat ttgtcacctt cacaaattac aatgtgccct catgttataa ttgatgttag 5461 acaattagaa ccagtcctac tacctatgcc agatatcaga aataacttct tccattacaa 5521 tcagggcaat gatccaaaat tgagattggt agctatgctc tacacccctt taagggctaa 5581 taattctggt gatgatgtgt tcacagtttc ttgtagggtc ctcactaaac cgtcacctga 5641 ttttgaattc acatttctag ttccccccac ggttgaatcc aagaccaagc agtttacatt 5701 gcccatcctc aagatatcag agatgaccaa ctcaagattc ccagtgccag tggaaatgat 5761 gtacacagcc aggaatgaga accaagttgt ccagccacag aatggtaggg tcacacttga 5821 tggcgaacta ttaggcacca cacccttatt ggctgtcaac atctgcaaat tcaagggaga 5881 ggttatagct aagaatggag atgtgagatc ctataggatg gacatggaaa tcaccaacac 5941 tgatggcacc ccaattgacc ccacagaaga cacacctggt cccattggtt cacctgattt 6001 tcaaggtata ctttttggcg ttgccagcca acgcaacaag aatgagcaaa accccgccac 6061 gagagcccat gaagccaaca ttaacactgg tggggaccaa tacgccccca aattggccca 6121 agtgaaattc ttctcagagt cccaggattt cgaggtgcac cagcccacag ttttcacccc 6181 agttggtgtg gcaggcgact cttcccaccc tttcagacag tgggtcctgc ctcgatacgg 6241 tggacatctc accaataaca cccacttggc tccagcagtg gcccctctat tcccaggtga 6301 gcagattcta ttctttagat cacaaatacc tagctcaggc ggccatgaat tgggttacat 6361 ggactgcctt gtcccacaag aatgggtcca acacttctat caagaagctg ccacagctca 6421 gtctgaggtg gcactcataa ggtttatcaa cccagacact ggcagagtcc tctttgaggc 6481 caaactgcac aagcaaggct ttataactgt ggctcacact ggtgataacc caattgtcat 6541 gccaccaaat gggtacttta gatttgaagc ctgggttaat cagttttact cactcgcccc 6601 cgtgggaact gggaatgggc gcaggaggat ccaataatgg ctagtgcttt ctttgcaaat 6661 ttggcaggag gcgttgcctc caatggaatt agttcactca taaatgctgg ggctaatgct 6721 attaatcaaa aggttgagtt tgattataat aaacaactcc aaaatgcatc cttctcccat 6781 gataaggaaa tgctccaagc ccaaattgaa gccactaaac gtctgcaaca agagatgatt 6841 gacataaaac aaggggtgtt gacagccgcg ggattctctc ctacggatgc cgcgaggggt 6901 tctgtcggcg cgccaatgac aaaattagtt gattggagtg gcactagata ttgggcacct 6961 ggcgccatga ggacaacagg ttattcaggg acttttactc acttaccccc tatgcagtct 7021 gctccatatg ttaataatca aaacagacaa cttcttaaag tagatccttc tcttccctct 7081 tcgagtggtt cttctgtttc ttctgtcaaa acacaatcaa ctaccctctc gggcacttca 7141 agggtgggct cctcatctca gtcaaccctg tcgaccaggc cgagcacaag gacatctgat 7201 tgggtgcgta gccaaaatga aaggttgagc cccttcatga atggagcgtt gcaaacaacg 7261 tatgtaacgc caccatccag tagggcatca agtgtcagca cagtctcgac cgtgccgaaa 7321 gaggttttgg actcctggac gcctatgttt aacactcaca ggcagccact cttcgcccac 7381 ttgcgtaggc gaggggagtc acagatttag tgaaaagatt ggttgggaaa gtttgattag 7441 tttgttcttc ttttctacta tcccttta //