Typing tool
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Typing tool
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Complete norovirus genomes
| MW305604 | GII.17 | |
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| GII.P13 |
ORF1: 1..5078
ORF2: 5059..6684
ORF3: 6684..7457
LOCUS MW305604 7483 bp RNA linear VRL 06-JUL-2021
DEFINITION Norovirus GII isolate PNV009912 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MW305604
VERSION MW305604.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7483)
AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P.,
Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E.,
Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H.,
Green,K.Y. and Parra,G.I.
TITLE Genome-wide analyses of human noroviruses reveal coexistence of
viral populations evolving under recombination constraints
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7483)
AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P.,
Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E.,
Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H.,
Green,K.Y. and Parra,G.I.
TITLE Direct Submission
JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug
Administration, 10903 New Hampshire Avenue, Silver Spring, MD
20993, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: High-performance Integrated Virtual
Environment (HIVE) v. 2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7483
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="PNV009912"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Peru"
/collection_date="01-Sep-2008"
/note="genotype: GII.17[GII.P13]"
gene <1..5078
/gene="ORF1"
CDS <1..5078
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QPJ59148.1"
/translation="VAGKNNNNDNAKSSSDGLFSNVSVTFKKALGARPKQPPPGETKQ
ISKPPRPPTPELVKIIPPPPSNGEDEPKVVYKVGEGVSGLPDLTTVTQPDARCTAYSV
PPLSQREAGDAKEPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISFAKIELTP
LSLYWRVVYTPQYLIAPDTLKNLNGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFRPYQEWNRKPLPTMDEPKIKKVANAVLCALSSLFTRPIKDIIGKLKPMNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFEMQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL
AGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLSNPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ
PDMWKDHYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTVGSLIARASGLLHERM
DEFELQGPGLSTFNFDRNKVAAFRQLAAENKYGMLDTLRVGNQLKGVKTMDELKRAIN
NITIKKCLIVYNGCTYTMESDGRGKVLVDKVQNTTVQTNNELAGALHHLRSARIRYYV
KCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPAEDNDESEDKGGCPKPRDEDE
FTVDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEELAIAKATEEDFCEEEEAKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR
NPDDFKPRGKLWADDDRSVDYNEKISFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVATILVK
RPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYK
RGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLS
TKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPS
ILESAKRTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNDYWSGETFTGK
LADQASKANLMYEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR
AFGGLMEELKAHCITLPVRVGMNMNEDGPIIFEKHSRYNYHYDADYSRWDSTQQRAVL
ASALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSISH
WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNHEDPSET
MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..968
/gene="ORF1"
/product="p48"
mat_peptide 969..2066
/gene="ORF1"
/product="NTPase"
mat_peptide 2067..2603
/gene="ORF1"
/product="p22"
mat_peptide 2604..3002
/gene="ORF1"
/product="VPg"
mat_peptide 3003..3545
/gene="ORF1"
/product="Pro"
mat_peptide 3546..5075
/gene="ORF1"
/product="RdRp"
gene 5059..6684
/gene="ORF2"
CDS 5059..6684
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QPJ59149.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAALAAAVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNRPSERMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKISADVQSSHQDRWHMQLTNLNGTPFDPTDDVPAPLGTPDFTGLLF
GVASQRNVGGTGNNTTRAHEVVIATTSTQFVPKLGSINFGSESDDFQVGPPTKFTPVG
IKVETGHPFRQWDLPNYSGALTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGVSEGII
DCLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPL
VVPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6684..7457
/gene="ORF3"
CDS 6684..7457
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QPJ59150.1"
/translation="MAGAFIAGLAGDMLTSAVGSLANAGANAITQKIDFENNKQLQAA
SFQHDKDMLRAQVDATKQLQAEMIAIKQGILTAGGFSPADAARGAVGAPMTKVLDWSG
TRYWAPNSTKTTSYSGQFTSTPVHTPNFNSKPRPPAKTPSSSSGSVYSLSTQSTSLPG
PSSSGSSVSSVSTQSTKLSSVSSMSRTADWVNQQRNLSPYMSGALNISHVTPPSSRAS
SSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ccgttgctgg caaaaacaac aacaacgaca acgcaaaatc ttcaagtgac ggattgtttt
61 ctaacgtgtc tgtcactttt aagaaagccc tcggggcgcg gcctaaacag ccgcccccgg
121 gagaaacaaa gcaaatctct aaaccgccaa gaccgccaac accggaattg gtgaagataa
181 tacccccacc cccatccaat ggcgaagacg agccaaaagt ggtgtacaag gtgggagaag
241 gtgtgtctgg gctgcctgac ttaacaacag tcacgcagcc tgatgcacga tgtacagcct
301 atagcgtccc cccgctcagt caaagagagg cgggtgacgc gaaggaacca ttacctggct
361 ccatcttgga gatgtgggat ggtgagatct atcattatgg gttgtacgtg gagcgtggcc
421 ttgtgcttgg ggtgcacaaa ccacccgctg cgataagctt cgctaaaatt gagttaacac
481 cattgtctct ttattggagg gttgtttaca ccccccagta cttaatagct ccagacactt
541 tgaagaacct gaatggagaa tcattcccat acacggcttt tgacaacaac tgctatgctt
601 tttgctgctg ggttttggac cttaatgatt cttggctcag caggagaatg attcaaagga
661 ccactggttt cttcaggcct taccaggagt ggaacagaaa gccattacca accatggacg
721 agcccaagat caagaaagtt gcaaacgctg tcctatgtgc tctctcttca ctcttcacca
781 gacccattaa agacatcatc ggcaagctaa aaccaatgaa catccttaac atactggcaa
841 cttgtgactg gacatttgca ggcatagtgg aatcccttat tcttcttgct gaactctttg
901 gggtgttctg gacgccccca gatgtgtctg cgatgatcgc tcccttgctc ggtgatttcg
961 aaatgcaggg ccctgaagat cttgccgtgg agctcgtgcc cgtggtaatg ggagggatag
1021 gtctggtgtt gggattcacc aaggaaaaga tcggcaagat gctttcatca gctgcatcca
1081 cactcagggc ttgtaaagat ctaggggctt atggattgga aatactcaaa ttagttatga
1141 aatggttctt ccctaagaaa gaagaggcca acgagctggc catggtaagg gccattgagg
1201 atgctgtgtt agaccttgag gcaatagaaa acaaccatat gaccactctt ctcaaggaca
1261 aagacagtct tgccacatac atgagaaccc tcgacttgga ggaagagaaa gcaagaaagc
1321 tctccaccaa atctgcatca ccagacatcg tgggcacaat aaactcactg ttggcaagga
1381 ttgcagcagc ccggtcacta gtccacaaag caaaagaaga gctgtcaagc agacaaaggc
1441 ctgttgtcgt tatgatatct ggcaggccgg gcatagggaa aactcaccta gccagagagc
1501 tggccaagaa agttgcatca acactggcag gtgaccaaag gattggcctg gtgcccagga
1561 atggtgtgga ccattgggat gcctataaag gagaaagagt ggtgctgtgg gacgactatg
1621 gcatgagcaa ccccatacag gatgccctaa gactccaaga actggctgat acctgccctc
1681 taacacttaa ctgtgacaga attgaaaaca agggaaaggt gtttgatagc gatgccataa
1741 taataacaac caacctctca aatccagcac ccttagacta tgttaacttc gaggcctgct
1801 ccagacgcat agacttctta gtatatgcag atgcaccaga tattgagaag gccaaacgag
1861 atttccctgg ccagccagac atgtggaaag accattacag accagacttc tcacacatca
1921 agctccaact ggccccacag ggcggttttg acaagaacgg caacacccca cacggtaagg
1981 gtgtgatgaa gtccttgact gttgggtcat tgatcgccag agcctctggc ctgctccatg
2041 aaagaatgga tgaatttgag ctacagggcc ctggtctgtc aactttcaac tttgaccgca
2101 acaaggtcgc tgcctttaga caactggcag ctgaaaataa gtatggcatg ttggacacac
2161 tgagagtagg aaaccagcta aagggtgtca aaaccatgga tgagctgaag cgagccatca
2221 ataacatcac catcaagaag tgcttgatag tgtataatgg atgcacctac actatggaat
2281 ctgatggacg tggtaaagtg ttagttgaca aagtgcaaaa cacaacagtt caaaccaaca
2341 atgagctcgc gggggccctg caccacctca ggtctgcaag aataagatac tatgtcaagt
2401 gtttccaaga ggcaatctac tccctactcc aaattgctgg tgcagctttt gtcacctcac
2461 gcatagtgag gcgcatgaat atctcaaacc tatggtcgaa gccacctgct gaagacaacg
2521 atgaatcaga ggacaaagga gggtgtccca aacccagaga tgaggatgag ttcaccgtcg
2581 attccaaaga catcaaagtg gaaggaaaga aaggcaagaa caaatctggg agaggaaaga
2641 aacacacagc tttctccagc aagggtctca gtgatgaaga atatgatgag tacaaaagaa
2701 tcagagaaga aagaaatggc aagtactcga tagaagagta tctccaagat agggacaggt
2761 attatgagga acttgccatt gctaaagcca ctgaggaaga cttttgtgaa gaggaggagg
2821 ccaaaatccg ccagaggatc ttccgtccta ccaggaaaca acggaaggag gagagagcca
2881 ccctcggact cgtcacgggg tcagaaatca ggaagaggaa cccggatgac ttcaaaccaa
2941 gaggaaaact gtgggctgat gatgacagga gtgtggatta taatgagaaa ataagttttg
3001 aagcaccacc aagcatctgg tcaagaatag ttaattttgg ttcaggctgg gggttctggg
3061 tgtccccaag ccttttcata acctcaaccc acgtgatacc gaaggggatc acggaggctt
3121 ttggtgtgcc catcaatcaa atacaaattc ataagtcagg agagttctgt cgcctgaggt
3181 tcccaaaacc catcaggacg gatgtgagtg ggatgatctt agaagaaggt gcccctgagg
3241 gaaccgtcgc aaccatcctt gtcaaacggc cgacagggga gttgatgccc ttggctgcta
3301 gaatgggaac ccatgccaca atgaggatcc aagggagaat ggtgggtggt cagatgggca
3361 tgttgctcac cggctcaaac gccaagggca tggacctcgg cacaacacca ggtgattgtg
3421 ggtgccctta catatacaag agaggcaacg actttgtggt catcggcgta cacaccgcag
3481 cagcacgtgg aggcaacaca gtcatatgtg ccacacaagg aagtgaaggt gaagccactc
3541 ttgaaggagg agacaacaag ggtacttact gtggagcccc tatcctgggt cctggcaacg
3601 caccaaaatt gagcaccaaa acaaaattct ggagatcttc caatgcacca ctcccaccag
3661 gcacctatga gccagcgtac ctaggtggaa aagacccacg agtgaaaggg ggtccgtcct
3721 tgcaacaagt catgagagat cagctcaagc ctttcactga acccagaggg aaaccaccaa
3781 acccaagtat tctggaatct gcaaagagaa ccatcatcaa cgttttggaa caaactattg
3841 acccacccca aaagtggaca tatgcccagg catgtgcatc tcttgacaaa acaacttcca
3901 gcggttaccc acatcatgtt cgcaagaatg actactggag tggtgagaca ttcacaggta
3961 aactggcaga tcaagcttca aaggcaaatc ttatgtatga agaaggaaaa cacatgacac
4021 cggtgtacac cgcggccctc aaggatgaac tagttaaaac tgacaaaatc tatggtaaga
4081 tcaagaagag gctactgtgg ggttctgacc tttccaccat gatccgatgt gctagggcat
4141 tcggtggcct catggaagaa ctcaaagcac actgcatcac ccttcctgtc agagttggca
4201 tgaacatgaa tgaagatgga ccaataatat ttgagaaaca ctccagatac aactaccatt
4261 atgatgcaga ttactcccgt tgggattcca cacaacaacg ggcggtgctt gcgtcagcac
4321 ttgaaatcat ggtgagattt tctgctgagc cacaattggc gcaaatagtg gctgaggacc
4381 tgctttcacc aagtgtggtt gatgtgggtg atttcaaaat tacaatcaat gagggccttc
4441 catccggcgt gccatgcacg tcccagtgga actcaatctc ccactggttg ctcacattgt
4501 gtgccttatc tgaggtgaca ggactaggtc ccgacatcat acaggccaac tccatgtact
4561 ctttctatgg tgatgatgaa attgtgagca ctgacataaa attggaccca gaaaagttaa
4621 ctgcaaagct cagagagtat ggcctcaagc ccactcgtcc tgacaaaact gaggggccat
4681 tggtgattag tgaagactta aacgggttga cattccttcg ccgcactgtg acccgtgatc
4741 cagcaggctg gtttggaaaa ctagatcaaa gctctatcct caggcaattg tattggacaa
4801 aaggacccaa ccatgaagac cccagtgaaa ccatgatacc acatgcacag aggcccgtac
4861 aactcatggc actactagga gaatcctccc tacatggacc ctcattttac agcaaagtta
4921 gtaaattggt tatatctgaa cttaaggaag gaggaatgga tttttatgtg cccagacaag
4981 agtcaatgtt cagatggatg aggttctcag atctaagcac atgggagggc gatcgcaatc
5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc taatgatggt
5101 gctgcgggcc tcgtcccaga gatcaacacc gagacccttc ccctagaacc agtggctggt
5161 gcagctcttg ctgcggctgt cactggtcaa aataatataa ttgatccctg gattagaaca
5221 aattttgtac aagcacccaa tggggagttc actgtttcac ctaggaattc cccaggagaa
5281 attctcctaa atttagaatt aggtcctgac ttaaatccct atttggcaca cttatctaga
5341 atgtacaatg ggtatgctgg tggagtggag gtccaggttc tcctagcagg gaatgcgttc
5401 accgctggaa agatcctctt cgctgccgta ccgccaaatt ttccagtcga attcttaagt
5461 cctgcccaaa ttactatgct cccacatttg atagttgacg tcaggaccct tgaaccaatt
5521 atgatacccc tccccgacgt gagaaacacc ttcttccatt acaacaatag gccctctgag
5581 cgtatgcgtt tggtggccat gttgtacaca cccctgagat ccaacggctc aggtgatgat
5641 gtcttcacag tctcatgtag agtgttaact agacccactc cagattttga attcacctac
5701 ctagttccac cctcagtaga gtctaagaca aagcctttct ctcttcccat cttaaccatt
5761 tctgaattga ctaattcaag gtttccagca cccattgatt cattgtttac cgcccaaaat
5821 aacaatctta atgtccaatg tcaaaatggt cggtgcacac tagatggtga gttgcaggga
5881 accacccagc tgctcccaac tggaatatgt gccttcagag ggaaaatatc agcagatgtg
5941 caaagcagcc accaagacag gtggcacatg cagttgacaa atctcaatgg caccccattt
6001 gatccaacag atgatgtccc agctccgctt ggcactcctg acttcacagg tctactgttt
6061 ggagttgcaa gccaaagaaa cgttggtgga acaggtaaca acaccaccag ggcccacgag
6121 gtagtgatag caacaactag tacacaattt gtgccaaaac tgggttctat taattttggg
6181 agtgaaagtg acgattttca agtgggccca ccaaccaaat tcacaccagt tggaatcaaa
6241 gttgaaaccg ggcatccttt cagacaatgg gacctaccta actattctgg agcactgacc
6301 ctcaacatga accttgctcc acctgttgcc ccaaacttcc caggtgagca gctgctcttc
6361 tttagatcaa atgttccttg tgctggtggt gttagtgagg gtattattga ctgcctgctg
6421 cctcaagagt ggatacaaca tttctaccag gagtccgctc catcccaatc agatgtggca
6481 ctgatcagat atgtcaaccc tgacacgggc cgcactctct ttgaggcaaa actccacagg
6541 actggttaca ttactgttgc tcactctggt gattatcctc ttgttgttcc ttctaatggc
6601 tattttaggt ttgattcttg ggtaaatcaa ttttactcac tcgcccccat gggaactggg
6661 aatgggcgca ggagagtgca gtaatggcag gagcttttat agcaggtctt gcaggtgaca
6721 tgctcacctc tgctgtaggc tcactggcaa atgctggagc aaatgccata acacagaaaa
6781 ttgactttga aaacaacaaa caacttcaag cagcctcctt tcaacatgat aaagatatgc
6841 tccgcgcaca agtggatgca actaagcagc tgcaggcaga aatgattgcc atcaaacagg
6901 ggatcttgac cgctggcggc ttctcccctg ctgacgcagc aagaggggct gtaggagcac
6961 ccatgaccaa ggtgcttgac tggtctggca cacgctattg ggcaccaaat tctaccaaaa
7021 caacaagtta ctccgggcag ttcacatcga cgcctgtgca cacaccaaat tttaacagta
7081 aacccaggcc tcctgccaaa accccttctt cttcttctgg tagcgtttat agtctttcaa
7141 cccaatcaac ttcactccct ggaccctctt cttcaggttc atctgtttct tctgtctcaa
7201 ctcaatcaac aaaattgagt tcagtttctt ctatgagtag aacagcagat tgggttaatc
7261 aacaaaggaa cctcagccct tacatgagcg gggcccttaa tatttctcat gtgacacctc
7321 catcaagcag ggcttcaagt tcgggaacag tctcaactgt gcccaaagaa gttttggact
7381 cctggacatc tgcattcaat acacgcagac agccgctctt cgcacacctc agagtgaggg
7441 gggagtcacg tgtttagtga aaagaatcaa ttagttttaa ttg
//