![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
MW305597 | GII.12 | ![]() |
|
---|---|---|---|
GII.P29 |
ORF1: 1..5075 ORF2: 5056..6663 ORF3: 6663..7442LOCUS MW305597 7491 bp RNA linear VRL 18-JUL-2024 DEFINITION Norovirus GII isolate 110-8 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305597 VERSION MW305597.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7491) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7491) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7491 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="110-8" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="USA" /collection_date="16-Nov-1987" /note="genotype: GII.12[GII.P29]" gene <1..5075 /gene="ORF1" CDS <1..5075 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59127.1" /translation="AAATSNNDNAKSSSDGVLNSMAVTFKRALGARPKQPPPREITQK QKPPRPPTPELIKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVSQPGETNTAFSVP PLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISFAKVELTPL SLYWRPVYTPQYLISPDTLRKLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR TTGFFRPYQDWNRKPLPTMDDSKLKKVANVVLCALSSLFTRPIKDIIGKLRPLNILNI LASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKDEVNELA MVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMNTLDLEEEKARRLSTKSASPDIVG TINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARDLAKKIAATLT GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVFADAPDVEKAKRDFPGQP DMWKDAFRPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLIARASGLLHERLD EYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKGVKTMSELKQALKN IAIKKCQIVYGGSTYSLESDGKGNVKVERVQSATVQTNNELTGALHHLRCARIRYYVK CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDTEETINKDGCPKPKDDEEF VVSSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ DRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN PDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV IPQGAQEFFGVSIRQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR PTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR GNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILGPGSAPKLST KTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPSV LEAAKKTIINVLEQTIDPPQKWSFSQACASLDKTTSSGHPHHMRKNECWNGESFTGKL ADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARA FGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYHYHYDADYSRWDSTQQRAVLA AALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHW LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPGKLTAKLIEYGLKPTRP DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETM IPHSQRPIQLMSLLGEAALHGPSFYSRISKLVIAELKEGGMDFYVPRQEPMFRWMRFS DLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2600 /gene="ORF1" /product="p22" mat_peptide 2601..2999 /gene="ORF1" /product="VPg" mat_peptide 3000..3542 /gene="ORF1" /product="Pro" mat_peptide 3543..5072 /gene="ORF1" /product="RdRp" gene 5056..6663 /gene="ORF2" CDS 5056..6663 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59128.1" /translation="MKMASNDAAPSNDGAAGLVPEANNETMALEPVVGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLSHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIVDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTMGELTNSRFPVPIDELYTSPNENLVVQPQNGRCTLDGELQGTT QLLPTAVCSFRGRINTKVAGEDNVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKIFG VLSQRNTNNACRAHDAVVATNSPKFTPKLGSLHIGTWEQTDIDTNQPTKFTPVGLHEH TDYNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHVPLKGGVADTVIDCLLPQ EWVQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRNGYITVSNTGSKPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6663..7442 /gene="ORF3" CDS 6663..7442 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59129.1" /translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQQDMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRYWAPGATRTTAFSGGFTSSTHTKTVDLSNKTTAAPIPSKPISRPSSSVSSNSTRST LVSGSSTSPSVRSLSSVSSQSSSPSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSR ASSNGTVSTVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA" ORIGIN 1 ccgctgctgc taccagcaac aacgacaacg caaaatcttc aagtgacgga gtactaaata 61 gtatggctgt cacttttaaa cgagccctcg gggcccggcc taaacagccg cccccgaggg 121 aaataacaca aaaacaaaaa cccccacgac cgcccacccc agaactgatc aaaaagatcc 181 cgcccccccc gcccaacggg gaggacgagt tggtggtctc ctatagcgta aaagatggcg 241 tttccggttt gcctgagctc tccaccgtca gccagccggg cgagaccaac acggcgttta 301 gtgttccccc actcaaccaa agggaaaaca gagacgctaa ggagccacta actggcacta 361 ttctggaaat gtgggatggg gagatctacc attatggcct gtatgtggaa cggggtttgg 421 tgcttggggt acacaaacca ccagcagcta tcagctttgc caaggttgag ctgacaccat 481 tgtccctgta ctggagacca gtgtacaccc ctcagtacct tatatccccg gacaccctca 541 gaaaactaca cggggagtca ttcccttaca cggcctttga caacaactgt tacgccttct 601 gttgttgggt cctggacctg aacgactctt ggcttagcag gaggatgata cagagaacaa 661 ctggcttttt caggccttac caggactgga acagaaaacc cctccccacc atggatgatt 721 ccaaattaaa gaaggtggcc aatgtagtcc tgtgtgcctt gtcatcattg ttcaccagac 781 ctattaagga cataattgga aaactaagac ccctaaacat cctcaacata ttggcttcct 841 gcgattggac ctttgcaggt atagtagaat ccctaatcct cctggcagaa ctctttggag 901 tattttggac acccccagat gtgtctgcga tgatcgcccc tttactaggt gactatgaac 961 tacaggggcc tgaggacctt gctgtagaac tcgtaccagt ggtaatgggg gggataggtt 1021 tggttctagg tttcaccaaa gagaaaattg gcaagatgct atcatctgcc gcgtccactc 1081 tcagggcttg taaagatctt ggagcttacg ggttagaaat cttgaagctg gtcatgaagt 1141 ggtttttccc gaagaaagac gaggtgaacg aactcgcaat ggtgagatcc atcgaagacg 1201 cagtattgga cctcgaagcg attgaaaaca accacatgac cgctctgctc aaagacaagg 1261 atagtttggc aacctatatg aacactctag atcttgaaga ggagaaagct agaagactgt 1321 ccaccaagtc tgcctcccct gacatcgtgg gtacaataaa cgccctgctg gcacggatcg 1381 cagccgctcg ttccctggtg catcgggcaa aagaggagct ttctagcaga ccaaggcccg 1441 ttgttgtgat gatatcaggt aaaccaggaa tagggaagac tcaccttgct agagacctag 1501 caaagaaaat cgcagccacc ctcacaggag atcagagggt gggtctcatc ccacgaaacg 1561 gcgttgatca ctgggacgca tataaaggtg aaagagttgt cctctgggat gactatggga 1621 tgagcaaccc catccatgac gccctcagat tacaagaact cgccgacacg tgccctctga 1681 cactaaattg tgataggatt gagaacaagg gaaaagtctt tgacagtgat gctataatca 1741 tcacaactaa tctggccaac ccagcaccat tggactatgt caactttgaa gcatgctcaa 1801 ggcgtatcga cttccttgtg ttcgctgatg ctcctgatgt tgagaaggca aagcgtgact 1861 tccctggaca acctgacatg tggaaagatg cctttagacc tgacttctca cacataaagc 1921 tgatgctggc cccccaaggg ggttttgaca agaatggcaa caccccacac gggaaaggcg 1981 tcatgaagac cctcacatct ggctctctca ttgcacgcgc atcagggctc ctccatgaga 2041 gattggatga atacgagctg cagggcccaa cacccacaac cttcaacttt gaccagaata 2101 aggtttttgc tttcaggcaa ctcgctgctg agaacaagta tgggttaatg gacaccatga 2161 gagtgggaag ccagctcaag ggtgtcaaaa ccatgtcaga gcttaaacag gcactcaaga 2221 acatcgcaat caaaaagtgt caaatagtct atggaggttc aacatattca cttgaatctg 2281 atggcaaagg caatgtaaag gtcgagagag tgcagagcgc aactgtgcag accaacaacg 2341 aactgacagg tgctctgcac catctcagat gcgccaggat caggtattac gttaagtgtg 2401 tccaggaggc cctgtactct atcatccaaa ttgctggggc cgcgtttgtc accacgcgca 2461 ttgcaaaacg catgaacata caaaaccttt ggtccaggcc acaagtggag gacacagaag 2521 agaccatcaa caaagatggg tgcccaaagc ccaaagatga tgaggagttt gtcgtatcgt 2581 ctgaggacat aaaagttgag ggcaagaagg gaaagaacaa gtctggtcgt ggtaagaaac 2641 acacagcctt ctcaagcaag ggtctcagtg atgaggagta cgatgaatat aaaagaatta 2701 gggaagaaag aaatggcaag tactccatag aagaatacct tcaggacaga gacaagtatt 2761 atgaggaggt ggccatagct agggctactg aggaggactt ctgtgaggaa gaggaggcca 2821 agatccgaca gaggatcttc agaccaacga ggaaacaacg caaagaggag agggcctctc 2881 ttggactggt cacaggctca gaaatcagaa agagaaaccc agatgacttc aaacctaagg 2941 gaaaattgtg ggctgatgac gacaggagtg ttgactacaa tgagaaactc agttttgaag 3001 ctcccccaag tatctggtca agaatagtca actttggttc aggttggggc ttctgggtct 3061 caccaagcct gttcataaca tccactcatg ttatacctca gggagcacag gagttcttcg 3121 gggtttccat taggcagatt caaatccaca aatcaggtga attctgtcga ctaagattcc 3181 caaaaccaat taggactgat gtgacgggca tgatcttaga ggagggggcc cctgaaggaa 3241 cagtggccac actgctcata aagagaccaa ctggggaact catgccattg gcggctagga 3301 tgggcaccca cgcaaccatg aagatccaag gccgcaccgt cgggggtcaa atggggatgc 3361 ttttgacagg atccaatgcc aagagcatgg acttgggcac cacaccaggt gactgtggat 3421 gtccatacat ctacaagaga ggaaatgact atgtagtcat tggggtccac acagccgctg 3481 ctcgcggagg aaacactgtc atctgtgcaa cccaaggaag cgaaggtgag gccgtacttg 3541 agggtggtga taacaagggc acctattgcg gtgccccgat cctaggtcca gggagcgccc 3601 caaagctcag caccaagacc aaattctgga ggtcatcaac agcaccactc ccacccggca 3661 catacgaacc agcctaccta ggaggtaagg atcccagggt caagggtggc ccctcattac 3721 agcaagtcat gagagaccaa ttgaaaccat tcacagaacc caggggaaag ccaccaaacc 3781 caagtgtgct ggaagctgcc aagaagacca tcatcaatgt ccttgaacaa acaatagacc 3841 caccccaaaa atggtcattt tcacaggcat gtgcatccct tgataaaacc acctccagtg 3901 gtcatccgca ccacatgcgg aagaatgaat gctggaacgg agagtccttc acaggaaaat 3961 tggcagatca agcttcaaaa gctaacctga tgtatgagga ggggaagaat atgaccccag 4021 tctacacagg tgcactcaag gatgagctag tcaaaactga taaaatatat ggaaaaatta 4081 agaagagact tctctgggga tcagacctgg caaccatgat ccgttgtgct cgagcattcg 4141 gaggactaat ggatgaactc aaggcccact gtgtcacact ccctattaga gttgggatga 4201 acatgaatga agatggcccc attatctttg agaaacattc taggtaccac taccattatg 4261 atgcagacta ctcccggtgg gattcgacac aacagagagc tgtgctagct gcagccctag 4321 aaatcatggt aaaattctct tcagaaccac atctagccca ggtagtcgca gaagaccttt 4381 tgtctcccag tgtgatggac gtgggcgatt tcaagatatc aattactgaa gggcttcctt 4441 ctggggtgcc ttgcacttca cagtggaatt ccatcgccca ttggctcctg acactctgtg 4501 cactctctga ggtaacaaat ttgtcccctg acatcatcca agcaaattcc ctcttctcct 4561 tctatggtga tgatgaaatc gtgagcacag atatcaaatt agacccggga aagcttacag 4621 ccaagttaat agagtatggg ctaaaaccaa ctcgccctga caagactgaa gggcctctgg 4681 tcatctctga ggacctagat ggtctgacct tcttgcggag aactgtgacc cgcgacccag 4741 ctggttggtt tggaaagttg gagcaaagtt caatacttag acaaatgtat tggaccaggg 4801 gccctaacca tgaggacccc tctgaaacaa tgataccaca ctcccagaga cccatacagc 4861 taatgtcact gctaggtgaa gcagcactgc atggaccatc attctacagc aggatcagta 4921 agctggtcat tgcagagttg aaggaaggtg gcatggactt ttacgtgcct agacaggagc 4981 caatgttccg atggatgagg ttctcagact tgagcacgtg ggagggcgat cgcaatctgg 5041 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgca 5101 gccggtctcg taccagaggc taacaatgag accatggcac ttgagccagt ggttggggct 5161 tcaatagcgg ctccactcac tggtcaaaat aatattatag acccctggat tagattaaat 5221 tttgtacagg cccccaatgg agagttcact gtctcaccac ggaactcacc tggagaagtc 5281 ttgctaaact tagaattagg ccctgaacta aatccttatt tgtcacatct atctagaatg 5341 tataatggtt atgcaggagg agtggaggtg caagtgttgc tggccgggaa tgcgttcaca 5401 gctggaaaat tggtgtttgc tgcagtccct ccccactttc cattagaaaa tattagccct 5461 ggacaaataa ctatgttccc ccatgtgatt gttgatgtta gaactttaga accagttttg 5521 ttgcccctcc cagatgttag gaataatttc tttcattata atcagcaaaa tgaacccaga 5581 atgagacttg tggctatgct ctacaccccc ctcaggtcca atggttctgg tgatgatgtc 5641 ttcactgtct cctgcagggt gctcactcgc ccctctcctg attttgattt taattatctg 5701 gttcccccca cagttgaatc aaagacaaaa ccattcacat tgcctatcct aactatgggt 5761 gagctgacca attctaggtt tcctgtacct atagatgaac tttacaccag ccccaatgag 5821 aacctggttg tgcaacccca gaatggtagg tgtacgctag atggggagtt gcaggggaca 5881 acccagcttc ttcccacggc agtctgctcg ttccgtggcc gcataaacac aaaggtggcc 5941 ggggaagata atgtttggaa catgcaagtc actaatatca atggaacacc ctttgaccca 6001 actgaggatg tcccagcacc attgggcacc cccgactttt cagggaaaat cttcggcgta 6061 ctcagccaaa gaaatacaaa caatgcctgc agagcccatg atgcagtggt ggcaaccaac 6121 agccccaaat ttaccccaaa attgggttct ctccatattg gaacttggga acaaactgat 6181 attgacacca accagcccac taaattcacc ccagtcgggc tacatgaaca cacagattat 6241 aaccagtgga ctttgcctaa ttattctggt gcattaaccc tcaatatggg attggcccct 6301 cctgttgctc ccactttccc tggtgaacag attctcttct ttagatctca tgtccctctt 6361 aaaggaggag tagcagacac agtcattgat tgcctcctgc cacaggagtg ggtccaacac 6421 ctttaccagg aatctgcccc ctcacagtca gatgtggccc taatcagatt cacaaaccca 6481 gacacagggc gtgtcttatt tgaggcaaaa ttacacagaa atggctacat cactgtgtcc 6541 aatactggaa gcaaaccaat tgttgtgcca gctaatggtt actttagatt tgactcctgg 6601 gtcaaccaat tttattctct tgcccccatg ggaactggga acgggcgtag aagggtgcag 6661 taatggctgg agcttttata gcagggcttg caggtgacat agtcactaac agcattggct 6721 cacttgtgaa cgctggggcc aacgcaataa accagaaagt agactttgaa aacaataaac 6781 aacttcaaca ggcctccttc aatcatgaca aagagatgct acaagcccaa atccaagcca 6841 caaaacagtt gcagcaagat atgattgcaa tcaggcaggg ggttttgacc gcaggcggct 6901 tttcccccac tgatgcagcg agaggtgcag tcaacgcacc gatgactcaa gtcttggact 6961 ggaatggtac taggtactgg gctcctgggg ctacaaggac aactgccttt tcaggaggat 7021 tcaccagctc cacccatacc aagactgttg atttatccaa taaaacaaca gctgcaccaa 7081 tcccctcaaa gcccatatct aggcctagtt cttctgtttc ttcaaattca acccgctcaa 7141 ctctagttag tgggtcttct acctctcctt ctgtgaggag tctgtctagt gtttcttccc 7201 agtcttcctc tccttcttcc cgaaccagtg agtgggtgcg gagtcagaat agagcactgg 7261 aaccatacat gaggggggcg ttgcaaacag cttacgttac gcctccctct agtagggctt 7321 ccagcaatgg cacagtctca accgtgccaa aggaaatttt ggactcctgg acatctgcgt 7381 ttaacacccg cagacagccg cttttcgctc atctccgtcg gagaggggag tcacaagctt 7441 agtgaaaaga tagaatttct ctttttacct cttcttttat ttctgtcttt t //