Typing tool
|
Complete norovirus genomes
MW305585 | GII.4 US95 | ||
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GII.P4 US95 |
ORF1: 1..5069 ORF2: 5050..6669 ORF3: 6669..7475LOCUS MW305585 7517 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate 40 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305585 VERSION MW305585.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7517) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7517) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7517 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="40" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan" /collection_date="22-Nov-1995" /note="genotype: GII.4[GII.P4]" gene <1..5069 /gene="ORF1" CDS <1..5069 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59091.1" /translation="AVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPREIPQR PPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPEEANTAFSVPPL NQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELTPLSL FWRPVYTPQYLISPDTLKKLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTT GFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGNLRPLNILNILA SCDWTFAGIVESLILLAELFGVFWTPPDVSALIAPLLGDYELQGPEDLAVELVPVVMG GIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMV RSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTI NALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLTGD QRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIEN KGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDM WKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEF ELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPDLKQALKNIS IKKCQIVYSGCTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLRCARIRYYVKCV QEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTGEAINKDGCPKPKDDEEFVI SSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR DKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPD DFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIP QGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPT GELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKREN DYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKT KFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLE AAKKTIINVLEQTIDPSEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD QASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG GLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAA LEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQWNSIAHWLL TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL STWEGDRNLAPSFVNEDGVE" mat_peptide <1..959 /gene="ORF1" /product="p48" mat_peptide 960..2057 /gene="ORF1" /product="NTPase" mat_peptide 2058..2594 /gene="ORF1" /product="p22" mat_peptide 2595..2993 /gene="ORF1" /product="VPg" mat_peptide 2994..3536 /gene="ORF1" /product="Pro" mat_peptide 3537..5066 /gene="ORF1" /product="RdRp" gene 5050..6669 /gene="ORF2" CDS 5050..6669 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59092.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRGDGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFETGQNTKFTPVGVTQDG DNHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 6669..7475 /gene="ORF3" CDS 6669..7475 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59093.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRATVPARGSSSTLS STPTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNKNLSPFMREALNT SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 ccgctgttgc caacagcaac aacgacaccg caaaatcttc aagtgacggg gtgctttcta 61 gcatggctgt cacttttaaa cgagccctcg gggcgcggcc taaacagccc cccccgaggg 121 aaataccaca aagaccccca cgaccaccta ccccagaact ggtcaaaaag atcccccctc 181 ccccgcccaa cggggaggat gaaatagtgg tttcttatag tgtcaaagat ggcgtttccg 241 gtctgcctga gctttccacc gtcagacaac cggaagaagc caatacggcc ttcagtgtcc 301 ccccactcaa ccagagggag aatagggatg ctaaggagcc actgactgga acaattctgg 361 aaatgtggga tggagagatc taccattacg gcctatatgt ggagcgaggt ctcatacttg 421 gtgtgcacaa accaccagcc gccattagcc tcgccaaggt cgagctaaca ccactctcct 481 tgttctggag acctgtgtat actccccagt atctcatctc tccagacact cttaagaaat 541 tacacggaga atcgtttccc tacacagcct ttgacaacaa ttgctatgcc ttctgttgct 601 gggtcttgga cctaaacgac tcgtggctga gcaggagaat gatccagaga acaactggct 661 tcttcagacc ctaccaagat tggaatagga aacccctccc cactatggat gattccaaat 721 taaagaaggt agctaacata ttcctgtgtg ctctatcttc actattcacc aggcccataa 781 aagacataat agggaatcta aggcctctta acatcctcaa catcttggcc tcatgtgact 841 ggactttcgc aggcatagtg gaatccttga tactcttggc agagctcttt ggagttttct 901 ggacaccccc agatgtgtct gcgttgattg cccccttact cggtgattac gagttacagg 961 gacctgagga ccttgcagtg gaactcgttc ctgtagtgat ggggggaatt ggtttggtgc 1021 taggatttac caaagagaag attggaaaaa tgttgtcatc tgctgcatcc accttaagag 1081 cttgtaaaga tcttggtgca tacgggctgg aaatcctaaa gttagtcatg aagtggttct 1141 tcccaaagaa agaggaagca aatgaactgg ctatggtgag atccatcgag gatgcagtgc 1201 tggacctcga ggcaattgaa aacaaccata tgaccacctt gctcaaagac aaagacagtc 1261 tggcaaccta catgagaacc cttgaccttg aggaggagaa agccaggaag ctctcaacca 1321 agtccgcttc acctgacatc gtgggcacaa tcaacgccct tctggcgaga atcgctgctg 1381 cacgttccct ggtgcaccga gcgaaggagg agctttccag cagaccaaga cctgttgtct 1441 tgatgatatc aggcagacca ggaataggga agacccacct tgctagggaa gtggccaaga 1501 gaatcgcagc ctccctcaca ggagaccagc gtgtaggcct catcccacgc aatggcgtcg 1561 atcattggga tgcgtacaag ggggagaggg tcgtcctatg ggacgactat gggatgagca 1621 atcccatcca cgatgccctc aggttgcaag aactcgctga cacttgcccc ctcactctaa 1681 actgtgatag gattgagaac aaaggaaagg tctttgacag tgatgtcata attatcacca 1741 ctaatctggc caacccagca ccactggact atgtcaactt tgaagcatgc tcgaggcgca 1801 tcgatttcct cgtgtatgca gaagcccctg aagtcgaaaa ggcgaaacgt gacttcccag 1861 gccaacccga catgtggaag aacgctttca gttctgattt ctcacacata aaactaacac 1921 tggctccaca gggtggcttc gataagaacg ggaacacccc acacgggaag ggcgtcatga 1981 agactctcac cactggctcc cttattgccc gggcatcagg gctactccat gagaggctag 2041 atgagtttga actacagggc ccagctctca ccaccttcaa ctttgatcgc aacaaagtgc 2101 ttgcctttag gcagcttgct gctgaaaaca aatacgggtt gatggacaca atgaaagttg 2161 gaaggcagct caaggatgtc agaaccatgc cagatcttaa acaagcactc aagaatatct 2221 caatcaagaa gtgccagata gtgtacagtg gttgcaccta tacacttgag tctgatggca 2281 agggcaatgt gaaagttgac agagttcaga gcgcctccgt gcagaccaac aacgagctgg 2341 ccggcgccct acaccatcta aggtgcgcca gaatcaggta ctatgtcaag tgtgtccagg 2401 aggccctgta ttccatcatc caaattgctg gagctgcatt tgtcaccacg cgcatcgtca 2461 agcgcatgaa catacaagac ctctggtcca agccacaagt ggaagacaca ggggaggcta 2521 tcaacaagga cgggtgccca aaacccaaag atgatgagga gttcgtcatt tcatccgacg 2581 acatcaaaac tgagggcaag aaagggaaga acaagactgg ccgcggcaag aagcacacag 2641 ccttctcaag caaaggtctc agtgatgaag agtacgacga gtacaagagg attagagaag 2701 aaagaaatgg caagtactcc atagaagagt accttcagga cagggacaaa tactatgagg 2761 aggtggccat tgccagggcg accgaggaag acttctgtga agaggaggag gccaagattc 2821 ggcaaaggat tttcaggcca acaaggaaac aacgcaagga ggaaagggcc tctctcggtt 2881 tagtcacagg ttctgaaatc aggaaaagga acccagatga tttcaagccc aaggggaaac 2941 tgtgggctga tgatgacaga agtgtggact acaatgagaa actcagtttt gaggccccac 3001 caagcatctg gtcgaggata gtcaactttg gttcaggttg gggcttttgg gtctctccca 3061 gtctgttcat aacatcaacc catgtcatac cccagggcgc aaaagagttc tttggagtcc 3121 ccatcaagca aattcagata cacaaatcag gcgaattctg tcgcttgagg ttcccaaaac 3181 caatcaggac tgatgtgacg ggcatgatct tagaagaagg tgcgcccgaa ggcaccgtgg 3241 tcacactact catcaagagg cctactggag aacttatgcc cctagcagct agaatgggga 3301 cccatgcaac catgaaaatt caagggcgca ctgttggagg tcagatgggc atgcttctga 3361 caggatccaa cgccaaaagc atggacctag gcaccacacc aggtgactgc ggctgcccct 3421 acatctacaa gagggaaaat gactatgtgg ttattggagt ccacacggct gccgctcgtg 3481 ggggaaacac tgtcatatgt gccacccagg ggagtgaggg ggaggccaca cttgaaggtg 3541 gtgacagtaa gggaacatac tgtggtgcac caatcctagg cccagggagt gccccaaaac 3601 tcagcaccaa gaccaaattc tggagatcgt ccacaacacc actcccacct ggcacctatg 3661 aaccagccta tcttggtggt aaggacccca gagtcaaggg tggcccttca ttgcaacaag 3721 ttatgaggga tcagttgaaa ccattcacag agcccagggg caaaccacca aagccaagtg 3781 tgttggaagc tgccaagaaa accatcatca atgtccttga acaaacaatt gatccatctg 3841 agaaatggtc attcgcgcaa gcttgcgcgt ccctcgacaa gactacttcc agtggccatc 3901 cgcaccacat gcggaaaaat gactgctgga acggggagtc cttcacaggc aagctggcag 3961 accaggcttc caaggccaac ctgatgttcg aagaggggaa gaacatgacc ccagtctaca 4021 caggtgcgct taaggatgag ttagttaaaa ctgacaaaat ttatggtaag atcaagaaga 4081 ggcttctctg gggctcggac ttagcgacca tgatccggtg cgctcgagca ttcggaggct 4141 taatggatga actcaaagca cactgtgtca cactccctat cagagttggt atgaacatga 4201 atgaggatgg ccccatcatt ttcgagaggc attccaggta caaatatcac tatgatgctg 4261 attactctcg gtgggattca acacaacaga gagccgtgtt ggcggcagcc ctagaaatca 4321 tggttaaatt ctcctcagaa ccacacttgg ctcaggtagt cgcagaagac cttctatctc 4381 ctagcgtggt ggatgtgggt gacttcaaaa tatcaatcaa tgagggtctc ccctctgggg 4441 tgccatgcac ctcccaatgg aactccatcg cccactggct tctcactctc tgtgcgctct 4501 ctgaagttac aaacttgtcc cctgacatca tacaggctaa ttccctcttc tccttttatg 4561 gtgatgatga aattgttagt acagatataa agttggaccc agagaaattg acagcaaaac 4621 tcaaggaata cgggttgaaa ccaacccgcc ctgacaaaac tgaagggccc cttgttattt 4681 ctgaagactt aaatggtctg accttcctgc ggagaactgt gacccgcgac ccagctggtt 4741 ggtttggaaa attggagcag agttcaatac tcagacaaat gtactggact aggggcccca 4801 accatgaaga cccatctgaa acaatgattc cacattccca aagacccata caattgatgt 4861 ccctattggg agaggccgca ctccacggcc cagcattcta cagcaaaatt agcaagttag 4921 ttattgcaga gctaaaagaa ggtggcatgg atttttacgt gcccagacaa gagccaatgt 4981 tcagatggat gagattctca gatctgagca cgtgggaggg cgatcgcaat ctggctccca 5041 gttttgtgaa tgaagatggc gtcgaatgac gccaacccat ctgatgggtc cacagccaac 5101 ctcgtcccag aggtcaacaa tgaggttatg gctttggagc ccgttgttgg tgccgctatt 5161 gcagcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa taattttgta 5221 caagcccctg gtggagagtt tacagtatcc cctagaaacg ctccgggtga gatactatgg 5281 agcgcgccct tgggccctga tttgaacccc tacctttctc acttggccag aatgtacaat 5341 ggttatgcag gtggttttga agtgcaggtg atcctcgcgg ggaacgcgtt caccgccggg 5401 aaaatcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag ccccagccag 5461 gttactatgt tcccccatat aatagtagat gttaggcaat tggaacctgt gttgatcccc 5521 ttacctgatg ttaggaataa tttctatcat tacaatcaat caaatgattc taccattaaa 5581 ttgatagcaa tgctgtatac accacttagg gccaacaatg ccggggatga tgtcttcaca 5641 gtctcctgtc gagtcctcac gaggccatcc cccgattttg atttcatatt cttggtgcca 5701 cccacagttg aatcaagaac taaaccattc accgtcccaa tcttaactgt tgaggaaatg 5761 tccaattcaa gattccccat tcctttggaa aagttgtaca cgggtcccag cagtgctttt 5821 gttgtccaac cacaaaatgg caggtgcacg actgatggcg tgctcttagg cactacccag 5881 ctgtctgctg tcaacatctg caccttcaga ggggatgtca cccacattgc aggcagccat 5941 gattatacaa tgaatttggc ttctcaaaat tggaacaatt atgacccaac agaagaaatc 6001 ccagcccctc tgggaactcc agatttcgtg ggaaagatcc aaggcatgct cacccaaacc 6061 acaagagggg atggctcgac ccgcgcccac aaagctacag tgagcactgg gagtgtccac 6121 tttactccaa agctgggcag tgttcaattc accactgaca caaacaatga ttttgaaact 6181 ggccaaaaca cgaaattcac cccagtcggc gtcacccagg acggtgataa ccatcaaaat 6241 gaaccccaac aatgggtact cccaaattac tcaggtagaa ctggtcataa tgtgcaccta 6301 gcccctgccg ttgcccccac ttttccgggg gagcaacttc ttttctttag gtccactatg 6361 cccggatgta gcgggtatcc caacatgaat ctggattgcc tactccccca ggaatgggtg 6421 cagcacttct accaagaagc agctccagca caatctgatg tggctctgct gagatttgtg 6481 aatccagaca caggtagggt tctgtttgag tgcaagctcc ataaatcagg ctatgtcaca 6541 gtggctcaca ctggcccgca cgatttggtt atccccccca atggttattt tagatttgat 6601 tcctgggtca accagttcta cacacttgcc cccatgggaa atggaacggg gcgtaggcgt 6661 gcattataat ggctggagct ttctttgctg gattggcatc tgatgtcctt ggctctggac 6721 tcggttccct aatcaatgct ggggctgggg ccatcaacca aaaagttgaa tttgaaaata 6781 acagaaaatt gcaacaagct tccttccaat ttagtagcaa tctacaacag gcttccttcc 6841 aacatgataa agagatgctc caagcacaaa ttgaggccac tcaaaaattg caacagggta 6901 tgatgaaggt taaacaggcg atgctcctag agggtggatt ctctgaaaca gatgcagccc 6961 gtggggcaat taacgccccc atgacaaagg ctctggactg gagcggaaca aggtactggg 7021 ctcctgatgc caggaccaca acatacaatg caggccgctt ttccacccct caaccttcgg 7081 gggcattgcc aggaagaact aatcttaggg ctactgtccc cgctcggggc tcctctagta 7141 cactttctag tactcccact gctacttctg tgtattcaaa tcaaactgtt tcaacgagac 7201 ttggttcttc agctggttct ggtaccagtg tctcgagtct cccgtcaact gcaaggacta 7261 ggagctgggt tgaggatcaa aacaaaaatt tgtcaccttt tatgagggag gctctcaaca 7321 catcattcgt caccccacca tctagtagat cctctagcca aggcacagtc tcaaccgtgc 7381 ctaaagaaat tttggactcc tggactggcg ctttcaacac gcgcaggcag cctctcttcg 7441 ctcacattcg taagcgaggg gagtcacggg tgtaatgtga aaagacaaaa ttgattatct 7501 ttcctttttt ttctttt //