Typing tool
|
Complete norovirus genomes
MW305582 | GII.17 | ||
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GII.P13 |
ORF1: 1..5040 ORF2: 5021..6634 ORF3: 6634..7404LOCUS MW305582 7446 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate T055 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305582 VERSION MW305582.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7446) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7446) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7446 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="T055" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Tunisia" /collection_date="15-Jul-1977" /note="genotype: GII.17[GII.P13]" gene <1..5040 /gene="ORF1" CDS <1..5040 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QPJ59082.1" /translation="KSSSDGLFANMTVTFKKALGARPKQPPPGETKQISKPPRPPTPE LVKRIPPPPPNGEDEPKVVYRVGEGVSGLPDLTTVTQPDAQNTAYSVPPLSQREVGDA KEPLPGSILEMWDGEIYHYGLYVERGHILGVHKPPAAISLAKIELTPLSLYWRVVYTP QYLIAPDTLKNLSGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQD WNRKPLPTMDEPKIKKVANAVLCALSSLFTRPIKDIIGKLKPMNILNILATCDWTFAG IVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGF TKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRAIEDAVL DLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIA AARSLVHKAKEELSSRQRPVVVMMSGRPGIGKTHLAREIAKKVASTLAGDQRIGLVPR NGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSD VIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHYRPD FSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTVGSLIARASGLLHERMDEFELQGPNLP TFNFDRNKVTAFRQLAAENKYGMMDTLRVGNQLKSVKTMDELKQAIRNITIKKCQIVY NGCTYTMESDGRGKVSVDKVQNATVQTNNELVGALHHLRSARIRYYVKCFQEAIYSLL QIAGAAFVTSRIVRRMNISSLWSKPPVEDNESEDKEGCPKPRDEDEFTVDSKDIKVEG KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERHGKYSIEEYLQDRDRYYEELAI AKATEEDFCEEEEAKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLW ADDNRSVDYNERIDFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPKGITEAFGV PISQIQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVATILVKRPTGELMPLAAR MGTHAAMKIQGRMVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVVIGVHT AAARGGNTVICATQGSEGEATLEGGDNRGTYCGAPILGPGNAPKLSTKTKFWRSSNAP LPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPSVLESAKKTIINV LEQTIDPPQKWTYAQACASLDKTTSSGHPHHVRKNDYWSGESFIGKLADQASKANLMY EEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKAH CITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVRFSA EPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLLTLCALSEVT GLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLVISE DLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTRGPNHEDPSETMIPHAQRPVQLM ALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNL APSFVNEDGVE" mat_peptide <1..933 /gene="ORF1" /product="p48" mat_peptide 934..2031 /gene="ORF1" /product="NTPase" mat_peptide 2032..2565 /gene="ORF1" /product="p22" mat_peptide 2566..2964 /gene="ORF1" /product="VPg" mat_peptide 2965..3507 /gene="ORF1" /product="Pro" mat_peptide 3508..5037 /gene="ORF1" /product="RdRp" gene 5021..6634 /gene="ORF2" CDS 5021..6634 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59083.1" /translation="MKMASSDAAPSNDGATGLVPEINHETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPAQRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNALNVQCQNGRCTLDGELQGTT QLLPSGICAFRGRLTADVNQQHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLY GVASQRNSDNTTRAHEVVISTTSSQFVPKLGSINFGSTSTDFQLQQPTRFTPVGIKIE DGHEFNQWTLPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGINAGIIDCLL PQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPS NGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6634..7404 /gene="ORF3" CDS 6634..7404 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59084.1" /translation="MAGAFIAGLAGDMLTNAVGSLANAGANAITQKIDFENNKQLQSA SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG TRYWAPNSTKTTSYSGQFTSTPVHMPVKQPTPVRKTQPPSSSSGSVYSLSTQSTTLSV PSSSSSAPSASTQLTKLSSASSMDRTANWVNQQRSLSPYMSGALNISHVTPPSSRASS SGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV" ORIGIN 1 aagtcttcaa gtgacggctt gtttgctaac atgactgtca cttttaagaa ggccctcggg 61 gcgcggccta aacagccgcc cccgggagaa acaaaacaaa tatctaaacc accaagacca 121 ccgacaccgg aattggtgaa gagaataccc ccacccccac ccaatggtga agatgagcca 181 aaggtggtgt acagggtggg agaaggtgta tctgggctgc ctgacttaac aaccgtcacg 241 cagcctgacg cacaaaacac agcctatagt gttcccccac tcagtcaaag agaggtgggt 301 gacgcgaagg aaccactacc tgggtccatc ttggaaatgt gggacggcga gatctaccac 361 tatgggctgt acgtggagcg tggtcatata ctcggggtac acaaaccacc cgctgcaata 421 agcctcgcta aaattgagtt aacaccattg tctctctact ggagggtggt ttacaccccc 481 cagtatttga tagctccaga cactttgaag aacttgagtg gagagtcatt tccctacacg 541 gcttttgata acaactgtta tgctttttgc tgctgggtcc tggatctcaa cgattcttgg 601 cttagtagaa ggatgatcca aagaacgacc ggtttcttta gaccatatca ggattggaac 661 agaaagcccc tgccaaccat ggatgaacct aaaatcaaga aggtcgcgaa tgccgtccta 721 tgtgccctct cttcactctt cactaggcct attaaggaca ttattggaaa gctcaaacca 781 atgaacatcc tcaatatact ggctacttgt gactggactt ttgcaggcat agtggaatcc 841 cttattcttc ttgccgaact ctttggggtg ttctggacac ccccagatgt gtctgcgatg 901 attgctccct tgctcggcga ctacgagatg caaggtcccg aagacctggc cgtggaactc 961 gtgcccgtag taatgggagg gataggtctg gtgctgggat tcaccaagga aaagatcggc 1021 aagatgctct catcggctgc atccacactc agagcctgca aagacctagg ggcttacgga 1081 ttggaaatac tcaaattagt tatgaaatgg ttcttcccta agaaagagga ggctaatgag 1141 ttagctatag tgagagccat tgaagatgct gtcttagacc tggaggcaat agaaaacaac 1201 cacttgacca ctctcctcaa ggataaggac agcctggcca catacatgag gactcttgac 1261 ttagaggaag agaaagcaag aaagctctcc accaaatctg catcaccaga cattgtaggc 1321 acaataaact cattgttggc aagaattgca gctgctaggt cactagtcca caaggcaaag 1381 gaggaattgt caagcagaca gaggcctgtc gtcgtaatga tgtctggcag accaggcata 1441 gggaaaaccc acctcgccag agagatagct aagaaggttg catcaacgtt ggcgggtgat 1501 caaagaattg ggttggtgcc caggaacggt gtggaccact gggacgccta caaaggagaa 1561 agggtggtgc tatgggatga ctatggcatg agcaacccta tacaggatgc tctaagactc 1621 caagagttgg ccgacacctg ccctctaaca ctaaattgtg acagaattga aaacaaggga 1681 aaagtgtttg acagcgatgt cataatcata acaaccaacc ttgcaaaccc agcaccactg 1741 gattatgtca actttgaggc ctgctccaga cgcatagact tcttagtgta tgcagatgca 1801 ccagacattg aaaaggccaa gcgtgacttc cctggccaac cagacatgtg gaaagatcat 1861 tacagaccag acttctcaca catcaagctc cagctagcac cgcagggtgg ttttgacaag 1921 aatggtaaca ccccacatgg caaaggtgtg atgaaatccc tgacggtcgg atcattgatc 1981 gccagggctt ctggattact ccatgagaga atggatgaat ttgaactcca aggccctaac 2041 ctaccaactt tcaactttga ccgcaacaaa gtcaccgcct ttaggcaatt ggcagctgaa 2101 aacaaatatg gtatgatgga cacactgagg gttggcaacc aactgaaaag tgttaaaacc 2161 atggatgaac ttaaacaagc catcagaaac atcaccatca aaaagtgcca gatagtgtac 2221 aatggatgca cctacaccat ggagtctgac gggcgtggca aagtgtcagt tgacaaagtg 2281 caaaatgcaa cagttcaaac caacaacgaa cttgtgggag cgctacacca cctaaggtct 2341 gcaagaataa gatactatgt caagtgcttc caggaggcaa tctactcctt gttgcaaatt 2401 gctggtgcag cctttgtcac ctcacgcatc gtgaggcgca tgaacatatc aagtctctgg 2461 tcaaagccac ccgttgaaga caatgagtca gaagacaaag aggggtgccc caagcccaga 2521 gatgaggatg agttcactgt tgactccaag gacatcaagg tggaaggaaa gaaaggcaag 2581 aacaagtctg gcagaggaaa gaaacacacg gctttctcca gtaagggcct cagtgatgaa 2641 gagtacgatg agtataaaag aatcagagaa gaaaggcatg gcaaatactc aatagaggaa 2701 tacctccaag atagggacag gtactatgaa gaactcgcca tcgctaaggc cactgaggag 2761 gacttctgtg aagaggagga agctaaaatc cgccagagaa tcttccgccc caccaggaaa 2821 cagcggaagg aggaaagggc cacactcgga ctcgtcacgg ggtcagaaat cagaaagagg 2881 aacccagatg acttcaaacc aaaggggaaa ctgtgggctg acgacaacag gagtgtggat 2941 tacaatgaga gaatagattt tgaggcacct ccaagcattt ggtcaagaat agtcaacttt 3001 ggttcaggtt gggggttttg ggtctcccca agtctcttca taacttcaac ccacgtgata 3061 ccgaaaggaa tcacggaggc ttttggtgta cccatcagtc aaatacaaat ccacaagtca 3121 ggggaattct gccgcttgcg gtttccaaaa ccaatcagga cagatgtgag tgggatgatt 3181 ttagaagagg gtgcccctga gggaaccgtt gcaaccattc ttgtcaagcg accaacaggg 3241 gaactaatgc ccctagcggc cagaatgggg acccatgccg caatgaagat ccaagggaga 3301 atggtgggtg gtcagatggg tatgttgctt accggttcaa acgccaaaag catggacctt 3361 ggcacaacac caggtgattg tggatgccct tacatataca aaagaggcaa tgacttcgta 3421 gtcatcggcg tgcacaccgc agcagcacgt ggaggcaaca cagtcatatg tgccacacag 3481 gggagcgaag gtgaggccac tcttgaaggt ggtgacaaca ggggcaccta ctgcggagct 3541 cccatcctgg ggcctggtaa cgcaccaaaa ctgagcacca aaacaaaatt ttggaggtct 3601 tccaacgcac cactcccacc aggcacctat gaaccagcat acctaggtgg gagagaccca 3661 cgtgtgaagg gaggtccgtc cttgcaacag gtcatgagag accagctcaa gccttttact 3721 gaacccagag gaaaaccacc aaacccaagt gttttagaat cagcaaagaa aaccatcatt 3781 aatgtcttgg aacaaaccat tgatcccccc cagaaatgga cctacgccca agcatgtgca 3841 tctcttgaca aaacaacctc cagcggtcat ccacatcacg tccgtaagaa tgactactgg 3901 agtggtgagt ccttcatagg caagctagca gaccaggcat caaaggcaaa tctcatgtac 3961 gaggagggta aacacatgac accagtgtac accgcagctc tcaaggatga gctggtgaaa 4021 actgacaaaa tttatggtaa gatcaagaaa agactcttat ggggttccga cctctccacc 4081 atgattcggt gtgccagggc attcggcggt ctcatggatg agctcaaagc acattgcatc 4141 actctccctg tcagagttgg catgaatatg aatgaagatg gacccataat atttgagaaa 4201 cattccagat acagatacca ctatgatgca gactattccc gttgggattc cacacagcaa 4261 cgggcagtgc tagcagcagc acttgaaatc atggtgagat tttctgcaga accacaattg 4321 gcacagatag tggctgagga cctgctgtcg ccgagcgtgg ttgacgtggg cgattttaag 4381 attacaatca atgagggtct gccatctggc gtgccttgca cgtctcaatg gaattccatc 4441 tcccactggt tgctcacctt atgtgccctg tctgaagtga caggactggg ccctgacatc 4501 atacaagcta actccatgta ttctttctat ggtgatgatg aaattgtaag cactgacata 4561 aaattggacc cagaaaagct aactacaaaa cttaaggaat atggcctcaa acccactcgc 4621 cctgacaaaa ctgaggggcc actggtgatc agtgaagact tgaacgggtt aacgttcctc 4681 cgtcggacag tgacccgtga tccagcaggt tggttcggaa agttggacca aagttccatc 4741 ctcaggcagt tatattggac aagaggaccc aaccatgaag atcctagtga aaccatgata 4801 ccacacgcac aaagacccgt gcagctcatg gcattgttag gagaatcctc cctacatgga 4861 ccctcatttt acagcaaagt tagcaaattg gttatatctg aacttaagga gggaggaatg 4921 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc 4981 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5041 cgccgctcca tctaatgatg gtgctacggg cctcgtccca gagatcaacc acgagaccct 5101 tcctctagaa ccagtggcag gcgcagctat tgccgcaccc gtcactggtc aaaataacat 5161 aattgatccc tggataagaa caaattttgt acaagcaccc aatggggagt ttacggtttc 5221 acctaggaac tctcctggag aaatcctcct aaatttggaa ttaggccctg atttgaatcc 5281 ttatttggca catctgtcta gaatgtacaa tgggtatgct ggtggtgtgg aagtccaagt 5341 cctcctagcg gggaacgcgt tcactgcagg aaagattctt ttcgctgccg tgccaccaaa 5401 tttcccagtt gaattcttga gtcctgccca aatcactatg ctaccacatt tgattgttga 5461 tgtcagaacc cttgagccca ttatgatacc actccctgat gttagaaaca ccttcttcca 5521 ttataataat cagcctgccc aacgcatgcg cctagtggcc atgttataca cccctctgag 5581 gtccaatggt tctggtgatg atgttttcac tgtttcttgc agagttttga ctagacccac 5641 cccagatttt gagtttacat atttggtccc cccttcggtg gagtctaaaa ctaaaccctt 5701 ttccctgccc attttaacta tctctgagct gactaattca agatttcctg cacctataga 5761 ttcactgttc acggcccaaa acaatgccct caatgtccaa tgccagaatg gccggtgcac 5821 actggatggt gagctacagg gaaccactca actgttgcca tcaggtatat gtgccttcag 5881 aggcaggttg acagcagatg taaatcagca acacgatgac agatggcaca tgcaactgac 5941 aaaccttaat ggaactccct ttgatccaac agaggatgtg ccagcccctc taggtacccc 6001 agactttaca ggtctcctct acggtgtggc cagccagaga aacagtgaca acaccaccag 6061 agcacacgag gtcgtgattt ccacaactag ctcacaattc gtgcctaaat tggggtcaat 6121 caactttggg agtacaagta ctgattttca gttgcagcaa cccaccagat ttacaccggt 6181 tggaatcaaa attgaagacg gacatgaatt taatcaatgg accctaccca ggtattcagg 6241 ccatttgacc cttaacatga accttgcccc acctattgct ccaaatttcc ctggtgaaca 6301 gttgctattc tttagatcaa atgtcccttg tgccggtggc atcaatgctg gcatcattga 6361 ctgcctgttg cctcaagagt ggatacagca tttctatcag gaatctgccc cctctcaatc 6421 agacgtggcc ctaatcaggt atgtcaaccc tgacacaggg cgcacgctct ttgaggcaaa 6481 gctccacaga tcaggttaca tcactgttgc ccactcaggt gactatccac ttgttgtccc 6541 ctctaatgga tactttagat ttgattcttg ggtgaaccag ttttactcac ttgcccccat 6601 gggaacaggg aatgggcgca gacgggtgca gtaatggcag gagcttttat agcaggtctt 6661 gcaggtgaca tgctcaccaa cgcagtcggc tcactggcaa acgctggggc caatgccata 6721 acccaaaaga tagattttga gaacaacaag cagctccaat ctgcctcttt ccagcatgac 6781 aaagacatgc tccaagcaca ggtagctgcc accaaacaat tgcaggctga catgatcgcc 6841 atcaaacagg ggatactgac cgctggcggc ttctccccta ctgatgcggc gagaggagca 6901 gtgggtgcac ccatgaccaa ggtccttgat tggtccggca ctcgctattg ggcaccaaat 6961 tccacaaaaa caaccagcta ttcgggacag ttcacatcaa cgcccgtaca catgcctgtt 7021 aaacagccca cccctgttag aaagacccag cccccttcct cttcttctgg tagtgtctat 7081 agtctttcaa cacagagtac cactttgtct gtaccttctt ccagttcttc tgctccttct 7141 gcttcaacgc aattaacaaa attgagttca gcttcctcta tggataggac agcaaattgg 7201 gttaatcaac agagaagcct tagcccctac atgagcggtg ctctcaacat ctctcacgtg 7261 acacctccgt cgagcagggc ttcaagttcg gggacagtct caactgtgcc caaagaagtt 7321 ttggactcct ggacatctgc attcaacaca cgcagacagc cgctcttcgc acacctcaga 7381 gtgagggggg agtcacgagt ttagtgaaaa gaatcaattg attttaaatt agatttaaat 7441 tggatt //