Typing tool
|
Complete norovirus genomes
MW305576 | GII.14 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6660 ORF3: 6660..7454LOCUS MW305576 7501 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate HK74 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305576 VERSION MW305576.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7501) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7501) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7501 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="HK74" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Hong Kong" /collection_date="10-Jan-1978" /note="genotype: GII.14[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59064.1" /translation="FGSQNSVNDSTNTTPSNREEVGAFSNIKVGFKKMLGAVPKGTKT PSSDQHCPTVKIGPKTLVIPPEPPNGEDVVQFDAKLETVRGLPDLTTVQNEHENTPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRCI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLVGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER RDEFQLQGSDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKVAL RDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDHTSQTANEVSSALLRLRQARARYY VSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSEPEKETAQGRWEIEP KDAEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLITGSDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG LKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNENHGTYCGAPILGPGRAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPEKLTQKLREYGLVPTRPDKTE GPLVITEDLAGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6660 /gene="ORF2" CDS 5044..6660 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59065.1" /translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASIAAPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT ILQSVSICNFKGTMQAELSDQPRYQYQLQLTNLDGSPIDPTDDVPAPLGTPDFQAMLY GVASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNV DDQHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCL LPQEWIEHFYQESAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMP TNGYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6660..7454 /gene="ORF3" CDS 6660..7454 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59066.1" /translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG SRYWAPNSMRTTGYSGTFVSQGVKNLPHLSSQTPSISRPSRASPSMSSSSSVYSSPST APSQSTQSTTLSAGTGSSRPNTASTGTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT PPSSKASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 cctttggcag ccaaaactct gtcaacgaca gtactaacac caccccttct aatagagaag 61 aggttggtgc gttttccaac attaaagttg gatttaagaa aatgctgggt gccgtgccca 121 agggcaccaa aacgcccagc agtgatcaac actgccccac agttaagatc gggcctaaga 181 cattagtgat cccacctgag cctccaaatg gagaagatgt cgtgcagttt gatgcgaagt 241 tggaaactgt acgtgggtta ccagacttga caacggtgca aaatgagcat gaaaacaccc 301 catacacagt ccccccacta agtgaaaggg aacatagacc agccactgag cccctccctg 361 gcacaatact ggagatgtgg gacggtgagt tctaccacta ctccgtctat gtcagcggag 421 gcaaagccct gggggtccac aaaccccctg cagctataag cctcgcgaca attgagctca 481 cccccatatc tctttactgg cggcccgtct acactcccaa ctacttggtt tgtccagaca 541 cattaaaggg ccttgctggt gagaagtttc cctacactgc cttcagcaac aactgttaca 601 acttctgttg ctgggtgctg gagctcaatg acacgtggct tagtagaaga tgcatctcca 661 gaaccaccgg cttctttaaa ccgtaccagt cttggaatag gaagcctctt ccaaccgtcg 721 atgatgggaa aatcaaaaag gtggccaacg caattctctg tgcgcttggc tcgctgtttt 781 caaaaccaat caaagatcta ttgggcaaac tcaaaccact gaatctgctg catctgctcg 841 cgtcatgtga ctggactttc gcgggtatag tggagacggt catcttaatg gcggaactct 901 tcaacgtctt ttggactccg ccggatgtct ccaatttcat agcatccctg gtaggtgact 961 tcgagttgca agggcctgag gacttggccg tggagctcgt ccctgtggtt atgggtggca 1021 taggaatggt tctcggtttc accgctgaga aaataggccg catgttgtca tctgctgcgt 1081 caaccttgcg ggcatgtaaa gatctgggga actatgccct cgatatactc aagctagtca 1141 tgaagtggtt cttcccaaag aaagaagaga aagccgagat ggagacctta agagcgattg 1201 aggatgctgt cttggatatg gaggctatag gaaacaacca cctcacgact ctcctcaagg 1261 acaaggatag cctaacagct ttcatgaaga ccctagacct ggaagaggag aaagcaagga 1321 agctgtcaac caaatcatcc tcgccggaca tcgtcggcac cattaatgcc atactggcca 1381 gaatagctgc cgccagatct ctcctacaca aagccaaaga agagatgttt agcaggatca 1441 gaccagtggt tgttatgatc tcaggcaggc ccggcattgg caagacccat atggcaagac 1501 acctggctaa gagcatcgcc aataccatga gtggtgacca gagagtcggg ctcgttccgc 1561 gtaacggggt cgaccactgg gacgcctaca ggggggagag ggtggtttta tgggatgact 1621 acggcatggg gagccctgtc aaagatgcac taacactaca agaattggcc gacacctgcc 1681 cagtcacctt aaattgtgac aggattgaga acaagggaaa gatgtttgac agtgacgtca 1741 ttataatcac aaccaactta gtcaaccctg cacccctcga ctacgtgaac ttcgaggcat 1801 gctccagaag agttgacttc ctggtttatg cagagtcacc agaaatcgaa aaggttaaga 1861 gagattttcc tggtcaacct gatatgtgga aagaccactt caagccggat ttttcccata 1921 taaagttaac tctagccccc cagggcgggt ttgataagaa tggcaacact ccgcatggta 1981 agggtaccat gcgatcttta acccaggggt ccctaactgc aagagttgct gggcttgttc 2041 atgagaggag agatgaattt cagctccaag ggagcgacct ccaaacatac aattttgaca 2101 ccaacagggt ctccgcattc aggaagctgg ctgcagacaa caagtatgga atcatggaga 2161 caatgagagt gggtgcagcg ctcaagaacg ttaagacttt ggaagaccta aaagtcgccc 2221 tgagagacgt gaagttcaat gagtgtgaaa ttatttacag gaactccaag tatcgagtct 2281 cttccaatgg caaaggctca gtttctgttg ataaggtcga ggaccacaca tcccaaactg 2341 caaatgaggt gagctcagca cttttaagac tcaggcaagc aagggccaga tactatgtca 2401 gttgcttcca agaccttgtc tacactctca tacaggttgc tggggcatca ttcgttgtta 2461 acaggatctc caagagattc tgttgggaaa ggtgggttaa accaactgag acccaggaga 2521 cgagtgaacc cgagaaggag accgctcagg gcaggtggga gattgaaccc aaggacgcag 2581 aaccagaagg caagaagggc aagaacaaga aggggagagg caagaaacac acagccttct 2641 ccagtaaagg tctaagtgat gaagagtatg acgagttcaa aagaatcaga gaagaaagaa 2701 atggaaagta ctctattgag gagtacctgc aagaccggga ccgctactat gaggaggtgg 2761 cagttgcccg agcaacagag gaggacttct gtgaagagga agaggccaag ataagacaaa 2821 gaatcttccg cccgacaaag aaacaaagaa aggaggaaag aggtgtgctt ggcctgatca 2881 ccggctcaga catcagaaag aggaggccag acgacttcca accaaaaggc aacctatggg 2941 cggatgatac tagaagtgtg gactacaatg agagactcga ctttgaggcc cctccaagtg 3001 tttggtcgag gatagttcca ttgggcactg gttggggttt ctgggtctca tccaacctct 3061 tgatcacgac aacacacgtc cttcctaagg gactcaaaga actttttgga gttgaaatca 3121 aacaaatcca gattcacaaa tctggagagt tctgcaggtt taggttccca agaccaatca 3181 ggccagatgt cacagggctt gtgttggaag aaggtgctcc agagggcact gtttgctcca 3241 tacttgtaaa gagacctaca ggtgagatga ttcccctggc agtgagaatg ggcactcatg 3301 cgtccatgaa aattcagggc agaaccgtcg gtggccaaat gggaatgctt ctcacaggag 3361 cgaacgcgaa gaacatggat cttggcaccg gtcctggtga ctgcggctgt ccctacatct 3421 acaagcgcgg taatgacata gttgttgcag gagtccacac cgcggcagcc cgggggggca 3481 acactgtcat ctgtgccacc caagggcaag atggggaggc agtccttgaa ggaaatgaga 3541 atcatggcac atactgtggt gccccaattc tcggtccagg cagagcgccc aaactcagca 3601 caaagaccaa attctggcgc tcatcaccag acgccttgcc acctggcaca tatgaacctg 3661 cttacctagg aggcaaagac cctagagtag aaaaagggcc ctccctgcag caagtcatga 3721 gagaccagtt aaagcccttt acagagccta ggggtaaacc accgagacct gcagtcctag 3781 aagaggccaa aaagacagtg atgaacgttt tggaacaaac cattgaccct gccaagccat 3841 ggacctactc gcaagcatgt gcctcgctgg ataaaaccac atccagtggt agccctcacc 3901 atgtcaggaa aaacgaccac tggaatggag aatccttcac aggtcccctc gcagatcaag 3961 catctaaagc caacctcatg tatgaacagg ccaagcatgt gcagcccgtg tatacggccg 4021 cgctcaaaga tgaacttgtt aagactgata aaatctacaa gaagataaag aagaggctcc 4081 tatgggggtc ggaccttggt acgatgatca ggtgcgccag ggcttttggt ggcctcatgg 4141 acagcatgaa ggcgagttgc atagctcttc catgcagggt gggaatgaac atgaatgagg 4201 acggccccat catctttgac aagcactcca aatacagata ccactatgat gctgactact 4261 ctaggtggga ttcaacccaa caaaggagca ttctgtctgc tgccatggaa gtgatggtgc 4321 gattctccgc agaaccagaa ttggcacaag tggttgcaga ggaccttttg gcgcctagtc 4381 aactagatgt tggcgatttt gtcatctcag ttcaggaagg cctaccatca ggggttccat 4441 gcacgtcaca atggaattca atagcacact ggatcctaac cttgagtgca atggcagaag 4501 tatcaggcct ttcaccagat gttgtccaag cccactcctg tttttctttc tatggtgatg 4561 atgagattgt cagcactgac atcaacctcg accctgaaaa attgacacag aaactcagag 4621 agtacggtct ggttcctacc cgacccgaca aaactgaagg tccccttgtc ataactgaag 4681 acctagctgg cctgactttc ctgcgtaggt caattgcacg ggacccagct gggtggtttg 4741 ggaaattgga tcaggactca atcctcaggc aattgtattg gacaagaggg cccaatcatg 4801 agaacccata cgaaagcatg gtcccccatt ctcagcgagc cacacagctc atggccctcc 4861 taggtgaagc ctcattgcat gggccccaat tttacaagaa ggttagtaag atggttatca 4921 gtgagatcaa gagtggtggt ctggaatttt atgtgcccag acaagaggcc atgttcaggt 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgagggtg 5041 tgaatgaaga tggcgtcgaa tgacgctact ccatctgatg atggtgcagc cggcctcgta 5101 ccagagatca acaatgaggt tatggctctt gaacccgtcg ctggggcttc cattgcagcc 5161 cccgttgtcg gacaacaaaa tataattgat ccctggatta gaaataattt tgtacaagcc 5221 cctgctggtg aatttacagt ctcccctaga aattctcccg gagaactttt gcttgattta 5281 gagctgggcc ctgaactaaa tccttatctt gcacatctgg ctagaatgta taatgggcat 5341 gcgggaggaa tggaagtgca gatagtacta gctgggaatg cgttcacagc tggtaagatc 5401 ctatttgctg ccatcccacc tagcttcccc tatgaaaatt tgtcacccgc tcaactgact 5461 atgtgccccc acgtgatagt ggatgtgaga caactggaac cggttctcct gccaatgcct 5521 gacataagga atgttttcta tcactacaac caaaacaaca gccccaaact caggcttgta 5581 gcaatgctgt acactcctct gagagctaac aactcaggtg atgacgtgtt cacggtgtca 5641 tgccgcgttt taacacgtcc ctccccagat ttccaattca cctttctggt cccacctaca 5701 gttgagtcta aaactaaaaa tttcactcta cctgttctca gagtctccga gatgacaaac 5761 tcaaggtttc cagtcgttct ggaccaaatg tacacgagca ggaatgaaaa catcattgtc 5821 caaccccaaa atggcaggtg cacgactgac ggtgagctcc ttggcaccac catcttgcag 5881 tccgtgtcta tttgcaactt taaaggaacc atgcaggcag aattgagtga tcaaccacga 5941 taccaatacc aactgcaact taccaatttg gatggctcac ccatagaccc aacagatgat 6001 gtgcctgccc ctcttggcac accagatttt caagctatgt tgtatggcgt tgcgagtcaa 6061 cgttcctcca gagacaatgc cactagggca catgatgcac aaattgacac tgcgggtgac 6121 acattcgccc caaagattgg ccaggttcgt ttcaaatcaa gttccaatga ctttgaccta 6181 catgacccta caaaattcac gcccattggc gtcaatgtgg acgaccagca cccttttaga 6241 caatggtctc taccaaatta tggtggtcat cttgccctga ataatcattt ggcccctgct 6301 gtaacgccac tcttccctgg cgaacaaatt ttattcttca gatcatacat tccaagcgct 6361 ggaggtcaca cagacggtgc tatggattgc ttgctacccc aagaatggat tgagcacttc 6421 taccaagagt cagccccttc ccaatctgac attgcattag tgaggttcat aaaccctgac 6481 acaggaagag tgctctttga agccaaattg cacaaacaag gcttcctcac aattgcagca 6541 tctggagacc accccatcgt gatgcccact aatggttatt tcaggtttga agcttgggtc 6601 aaccccttct acactctcgc ccccgtggga actgggtctg ggcgcagaag gatccaataa 6661 tggcaggagc tttccttgca ggcttggcag gcgatgttgt gacttccagt ttgggctcgc 6721 tcgtgggtgc tggagccaac gccatcaacc aaaaagtgga gtatgacttt aacagacagc 6781 ttcaggaggc atctttcaga catgacaagg acatgctcaa agcccaggtt gcagcaacag 6841 caggccttca acaggctatg attgacatca aacgggaggc attgaccgca ggcggctttt 6901 ctcccgctga tgctgcgaga ggtgcagtca gagcacctat gacacagatc ctggattgga 6961 atggttccag gtattgggct cccaactcca tgaggacaac aggttattca ggtacatttg 7021 tttcccaggg tgtcaaaaat cttccccatt tgtctagtca aactccaagt atttctagac 7081 cctccagagc ttcaccatcc atgtctagtt cttctagtgt gtatagttct ccctctactg 7141 ctccttcgca atcaacacaa tcaacaacgc tgtctgcggg gactgggtcg tccaggccta 7201 acaccgcgtc cacaggaaca tccacactgt ctagaacaag tgattgggtt agaggtcaga 7261 atgagatgct tggcccgttc atgagtggtg cactccaaac tgcttacgtc acaccaccat 7321 cgagcaaggc ctcatcacaa gggacggtct cgaccgtgcc caaggctgtt ttggactcct 7381 ggactcctat gttcaacacc cataggcagc ctctcttcgc ccacttgcgt aggcgagggg 7441 agtcacagat ttagtgaaaa ggatgattag ggttttcttc ctttcccctt cttattcttt 7501 t //