Typing tool
|
Complete norovirus genomes
MW305569 | GII.14 | ||
---|---|---|---|
GII.P7 |
ORF1: 1..5030 ORF2: 5011..6627 ORF3: 6627..7421LOCUS MW305569 7460 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate B17-c1 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305569 VERSION MW305569.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7460) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7460) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7460 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="B17-c1" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Central African Republic" /collection_date="21-Feb-1976" /note="genotype: GII.14[GII.P7]" gene <1..5030 /gene="ORF1" CDS <1..5030 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ59043.1" /translation="NTTPSNKEEAGAFSNIKVGFKKMLGAVPKGTKTPSGDQHCPTVK IGPKTLMVPPEPPNGEDVVQFDAKSETVRGLPDLTTVQNEHENTPYTVPPLSEREHRP ATEPLPGTILEMWDGEFYHYSVYVSSGKALGVHKPPAAISLATIELTPISLYWRPVYT PNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLCRRCISRTTGFFKPYQ SWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFA GIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLG FTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAV LDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARI AAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTMSGDQRVGLVP RNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCDRIENKGKMFDS DVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHFKP DFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGNDL QTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKVALRDVKFNECEII YRNSKYRVSSNGKGSVSVDKVEDHASQTANEVSSALLRLRQARARYYVSCFQDLVYTL IQVAGASFVVNRISKRFCWERWVKPTETQETSEPEKETAQGRWEIEPKDAEPEGKKGK NKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARAT EEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDT RSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGLKELFGVEVKQ IQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTH ASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAAR GGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPG TYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQT IDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAK HVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIAL PCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPEL AQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSP DVVQAHSCFSFYGDDEIVSTDINLDPAKLTQKLREYGLVPTRPDKTEGPLVITEDLAG LTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLG EASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEG VNEDGVE" mat_peptide <1..938 /gene="ORF1" /product="p48" mat_peptide 939..2036 /gene="ORF1" /product="NTPase" mat_peptide 2037..2555 /gene="ORF1" /product="p22" mat_peptide 2556..2954 /gene="ORF1" /product="VPg" mat_peptide 2955..3497 /gene="ORF1" /product="Pro" mat_peptide 3498..5027 /gene="ORF1" /product="RdRp" gene 5011..6627 /gene="ORF2" CDS 5011..6627 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ59044.1" /translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASLAAPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT ILQSVSICNFKGTMQAELSDQPRYQYQLQLTNLDGSPIDPTDDVPAPLGTPDFQAMLY GVASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNV DDQHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILYFRSYIPSAGGHTDGAMDCL LPQEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMP TNGYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6627..7421 /gene="ORF3" CDS 6627..7421 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ59045.1" /translation="MAGAFLAGLAGDVVTSSLGSLAGAGANAINQKVEYDFNRQLQEA SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG SRYWAPNSMRTTGYSGTFVSQGVKNIPHLSSQAPSASRPSRALPSISSSSSVYSSPST APSQSTQLTTLSAGTGSSRPNTVSTGTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT PPSSKASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 ctaacaccac cccttctaat aaagaagagg ctggtgcatt ttccaacatt aaagttggat 61 ttaagaaaat gctgggtgcc gtgcccaagg gcaccaaaac gcccagcggt gaccaacact 121 gccccacagt taagatcgga cctaaaacat taatggtccc acctgaacct ccaaatggag 181 aagatgtcgt gcagtttgat gcgaagtcag aaactgtacg tgggctacca gacttgacaa 241 cggtacaaaa tgagcatgaa aataccccat acacagtccc cccactgagt gaaagggaac 301 atagaccagc cactgagccc ctccctggca caatactgga gatgtgggac ggtgagttct 361 accactactc cgtctatgtc agcagtggca aagccctggg ggtccacaaa ccccctgcag 421 ctataagcct cgcgacaatt gagctcaccc ccatatccct ttactggcgg cccgtttaca 481 ctcccaacta cttggtttgc ccagacacat taaagggcct tgctggtgag aagttcccct 541 acactgcctt cagcaacaac tgttacaact tctgttgttg ggtgctggag ctcaatgaca 601 cgtggctttg tagaagatgc atctccagaa ccaccggctt ctttaaaccg taccagtctt 661 ggaataggaa gcctcttcca accgtcgatg atgggaaaat caaaaaggtg gccaacgcaa 721 ttctctgtgc gcttggctcg ctgttttcaa aaccaatcaa agatctatta ggcaaactca 781 aaccactgaa tctgctgcac ctgctcgcgt catgtgactg gactttcgcg ggtatagtgg 841 aaacggtcat cttaatggcg gaactcttca acgtcttttg gaccccgccg gatgtctcca 901 atttcatagc ctccctgata ggtgacttcg agttgcaagg gcctgaggac ttggccgtgg 961 agctcgtccc tgtggtcatg ggtggcatag gaatggttct cggtttcact gctgagaaga 1021 taggccgcat gttgtcatct gctgcgtcaa ccttgcgggc atgtaaagat ctggggaact 1081 atgccctcga tatactcaag ttagtcatga agtggttctt tccaaagaaa gaagagaaag 1141 ccgagatgga gaccttaaga gcgattgagg acgccgtctt ggacatggag gctataggaa 1201 acaaccacct cacgactctc ctcaaggaca aggatagcct cacggctttc atgaagaccc 1261 tagacctgga agaggagaaa gcaaggaagc tgtcaaccaa atcatcttcg ccggatattg 1321 tcggcaccat taatgccata ctggccagaa tagctgccgc cagatccctc ctacataaag 1381 ccaaagagga gatgtttagc aggatcagac cagtggttgt tatgatctca ggcagacccg 1441 gcattggcaa aacccatatg gcaagacacc tggctaagag catcgccaat accatgagtg 1501 gtgaccagag agtcgggctc gttccgcgca acggggtcga ccactgggac gcctacaggg 1561 gggagagggt ggttttatgg gatgactacg gcatggggag ccctgtcaaa gatgctttaa 1621 cactacaaga attggccgac acctgcccgg tcaccttaaa ttgtgacagg attgagaaca 1681 agggaaagat gtttgacagt gacgtcatta taatcacaac caatttagtt aaccctgcac 1741 ccctcgacta tgtgaacttc gaggcatgct ccagaagagt tgactttcta gtctatgcag 1801 agtcaccaga aatcgaaaag gttaaaagag atttccctgg tcaacctgat atgtggaaag 1861 accacttcaa gccggacttt tctcatataa agctgacttt agccccccag ggcgggtttg 1921 ataagaatgg caacactccg catggtaagg gtaccatgcg atccttaacc caggggtccc 1981 taactgcaag agttgctggg cttgtccatg agaggagaga tgaattccag ctccaaggga 2041 acgacctcca aacatataat tttgacacca acagggtctc cgcatttagg aagctggctg 2101 cagacaacaa gtatggaatc atggagacaa tgagagtggg tgcagcgctc aagaatgtta 2161 agactttgga agacctaaaa gtcgctctga gagacgtgaa gttcaatgag tgtgaaatta 2221 tttacaggaa ctccaagtat cgagtctctt ccaacggcaa aggctcagtt tctgttgata 2281 aggtcgagga ccacgcatcc caaactgcaa atgaggtgag ctcagcactc ctaaggctca 2341 ggcaagcaag ggccagatac tatgtcagct gcttccaaga ccttgtctac actctcatac 2401 aggttgctgg ggcgtcattc gttgtcaaca ggatctccaa gagattctgc tgggaaaggt 2461 gggttaaacc aactgagacc caggagacga gtgaacccga gaaggagacc gctcagggca 2521 ggtgggagat tgaacccaag gacgcagaac cagaaggcaa gaagggtaag aacaagaaag 2581 ggagaggcaa gaaacacaca gctttctcca gtaaaggcct aagtgatgaa gagtatgacg 2641 aattcaaaag aatcagagaa gaaagaaatg gaaagtactc cattgaggag tacctgcaag 2701 atcgggaccg ctactacgag gaagtggcag ttgcccgagc aacagaggag gacttctgtg 2761 aagaggaaga ggccaagata agacaaagaa tcttccgccc gacaaagaaa caaaggaagg 2821 aggaaagagg tgtgctcggc ttggtcaccg gctcggacat cagaaagagg aggccagatg 2881 acttccaacc aaaaggcaac ctatgggcgg atgacactag aagtgtggac tataatgaga 2941 gactcgactt tgaggcccct ccaagtgttt ggtcgaggat agtcccattg ggtactggtt 3001 ggggtttctg ggtctcatcc aacctcttga tcacgacaac acacgtcctt cctaagggac 3061 tcaaagaact ttttggagtt gaagtcaaac aaatccaaat tcacaaatct ggagagttct 3121 gcaggtttag attcccaaga ccaatcaggc cagatgtcac agggcttgtg ttggaagaag 3181 gtgctccaga gggcactgtt tgctccatac ttgtaaagag acctacaggt gaaatgatcc 3241 ccttggcagt gagaatgggc actcatgcgt ccatgaaaat tcagggcaga accgtcggtg 3301 gccagatggg aatgcttctt acaggagcga acgcgaagaa catggatctt ggcaccggtc 3361 ctggtgactg cggctgtccc tacatttaca agcgcggtaa tgacatagtt gttgcaggag 3421 ttcacaccgc ggcagcccgg gggggcaaca ctgtcatctg tgccacccaa gggcaagatg 3481 gggaggcagt ccttgaggga aacgagaatc ttggcacata ctgtggtgcc ccaattctcg 3541 gtccaggcaa ggcgcccaaa ctcagcacga agaccaaatt ctggcgttca tcaccagacg 3601 ccttgccacc tggcacatat gaacctgctt acctaggagg caaggaccct agagtagaaa 3661 aagggccctc cctgcagcaa gtcatgagag accagttaaa accctttaca gagcctaggg 3721 gtaaaccacc gagacctgca gtcctagaag aggccaaaaa gacagtgatg aatgttttgg 3781 aacaaaccat tgaccctgcc aagccatgga cttactcaca agcatgtgcc tcattggata 3841 aaaccacttc cagtggtagc ccccaccacg tcaggaaaaa tgaccactgg aatggagaat 3901 ccttcacagg tcccctcgca gatcaagcat ctaaagccaa cctcatgtat gaacaggcca 3961 aacatgtgca gcccgtgtat acggccgcac tcaaggatga acttgttaag actgataaaa 4021 tctacaagaa gataaagaag aggctcctat gggggtcgga ccttggcacg atgatcaggt 4081 gcgccagggc ttttggtggc ctcatggaca gcatgaaggc gagttgcata gctcttccat 4141 gcagggtggg aatgaacatg aatgaggacg gtcccatcat ctttgacaag cactccaaat 4201 atagatacca ctatgatgct gactactcta ggtgggattc aacccaacaa aggagcatcc 4261 tttctgctgc tatggaagtg atggtgcgat tctccgcaga accagaattg gcacaagtgg 4321 ttgcagagga ccttctggcg cctagtcaac tagatgttgg cgattttgtc atctcagttc 4381 aggaaggtct accatcaggg gtcccatgca cgtcacaatg gaattcaata gcacactgga 4441 tcctaacctt gagtgcaatg gcagaagtat caggcctttc accagatgtt gtccaagccc 4501 actcctgttt ttctttctat ggtgatgatg agattgtcag cactgacatc aacctcgacc 4561 ctgcaaaatt gacacagaaa ctcagggagt acggtctggt tcctacccga cctgacaaaa 4621 ctgaaggtcc ccttgtcata actgaagacc tagctggcct tacgttcctg cgtaggtcaa 4681 ttgcacggga cccagctggg tggtttggaa aattggatca ggactcaatc ctcaggcaat 4741 tgtattggac aagagggccc aaccatgaga acccatacga aagtatggtc ccccattctc 4801 agcgagctac acagctcatg gccctcctag gtgaagcctc attgcatgga ccccaatttt 4861 acaagaaggt tagtaagatg gttatcaatg agattaagag tggtggtctg gaattttatg 4921 tgcccagaca agaggccatg ttcaggtgga tgagattctc tgacctcagc acatgggagg 4981 gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgaatga cgctactcca 5041 tctgatgatg gtgcagccgg cctcgtacca gagatcaaca atgaggttat ggctcttgaa 5101 cccgtcgctg gggcctccct tgcagccccc gtcgtcggac aacagaatat aattgatccc 5161 tggattagga ataattttgt acaagcccct gctggtgaat ttacagtctc ccctagaaat 5221 tctcctggag aacttttgct tgatttagag ctgggccctg aactaaatcc ctatcttgca 5281 catttggcta gaatgtacaa tgggcatgca ggaggaatgg aagtgcagat agtactagct 5341 gggaatgcgt tcacagctgg taagatccta tttgctgcca tcccacctag tttcccctac 5401 gaaaatttgt cacccgctca actgaccatg tgcccccacg tgatagtgga tgtgagacaa 5461 ttggaaccgg tgctcctgcc aatgcctgac ataaggaatg ttttctatca ctacaaccag 5521 aacaacagtc ccaaacttag gcttgtagct atgctgtaca ctcctctgag agctaacaac 5581 tcaggtgatg acgtgttcac ggtgtcatgc cgcgttttaa cacgtccctc tccagatttt 5641 caattcacct ttctggtccc acccacagtt gagtctaaaa ccaaaaattt cacccttcct 5701 gttctcagag tctccgagat gacaaactca aggtttccag tcgttctgga ccaaatgtac 5761 acgagcagga atgaaaacat cattgtccaa ccccaaaatg gcaggtgcac gactgacggt 5821 gagctccttg gcactaccat cttgcagtct gtgtctattt gcaactttaa aggaaccatg 5881 caggcagaat tgagtgatca accacgatac cagtaccaat tgcaactcac caacttggat 5941 ggctcaccta tagacccaac agatgacgtg cctgcccctc ttggcacacc agattttcag 6001 gctatgttgt atggcgttgc gagtcaacgt tcctccagag acaacgccac tagggcacat 6061 gatgcacaaa ttgacactgc gggtgacaca ttcgccccaa agattggcca ggttcgtttt 6121 aaatcaagtt ccaatgattt tgacctacat gaccccacaa aattcacgcc cattggtgtc 6181 aatgtggatg atcagcaccc tttcagacag tggtctctac caaattacgg tggacatctt 6241 gccctgaata atcatttggc ccccgctgta acaccactct tccctggcga gcagatttta 6301 tacttcaggt catacattcc aagcgctgga ggtcacacag acggtgctat ggactgcttg 6361 ctaccccaag aatggattga acatttctac caagaggcag ccccttccca atctgacatc 6421 gcactagtga ggttcataaa ccctgacaca ggaagagtgc tctttgaggc caaattgcac 6481 aaacaaggtt tcctcacaat tgcagcatct ggagaccacc ccattgtgat gcccactaat 6541 ggttatttca ggtttgaagc ttgggttaac cccttctaca ctctcgcccc cgtgggaact 6601 gggtctgggc gcaggaggat ccaataatgg caggagcttt ccttgcaggc ttggcaggtg 6661 acgttgtaac ttccagtttg ggctcacttg cgggcgctgg agccaacgcc atcaaccaaa 6721 aagtggagta tgacttcaac agacagctcc aggaggcatc tttcagacat gataaggaca 6781 tgctcaaagc ccaggttgca gcaacagcag gccttcaaca ggctatgatt gacatcaaac 6841 gggaggcatt gaccgcaggc ggcttttccc ccgctgatgc tgcaagaggt gcagtcagag 6901 cacctatgac acagatcctg gattggaatg gttccaggta ttgggctccc aactccatga 6961 ggacaacagg ttattcaggt acatttgttt cccagggtgt caaaaatatt ccccacctgt 7021 ctagtcaagc tccaagcgct tctagaccct ccagagcttt accatctatt tctagttctt 7081 ctagtgtgta tagttctccc tctactgctc cttcgcaatc aacacaatta acaacgctgt 7141 ctgcggggac tgggtcgtct aggcctaaca ccgtgtccac aggaacatcc acactgtcta 7201 gaacaagtga ttgggttaga ggtcaaaatg agatgcttgg cccgttcatg agtggtgcac 7261 ttcaaactgc ttacgtcaca ccaccatcga gcaaggcctc atcacaaggg acagtctcga 7321 ctgtgcccaa ggctgttttg gactcctgga ctcctatgtt caacacccat aggcagcctc 7381 tcttcgccca cttgcgtagg cgaggggagt cacagattta gtgaaaagga tgattagggt 7441 tttcttcctt tccccttcta //