Typing tool
|
Complete norovirus genomes
MW305552 | GII.7 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6666 ORF3: 6666..7439LOCUS MW305552 7500 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate 168HBO nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305552 VERSION MW305552.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7500) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7500) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7500 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="168HBO" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Paraguay" /collection_date="02-Aug-2016" /note="genotype: GII.7[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ58992.1" /translation="FGSQNSVNDSNNATPSNKEEVGAFSNIKVGLKKMLGAVPKGAKA PSSNQNCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFRPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER RDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLEDLKAAL RDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQAVNEVHSALLRLRQARARYY ISCFQDLVYTLMQVAGASFVVSRISRRFCWERWVKPTETQEVNEPEKEVAQGGWEIEP KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG VKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLVKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6666 /gene="ORF2" CDS 5044..6666 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58993.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGLPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 6666..7439 /gene="ORF3" CDS 6666..7439 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58994.1" /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPMQPTSYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ STALSGTSRVDSPSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRVS SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 cctttggcag tcaaaactct gtcaatgaca gtaataacgc caccccttct aacaaagaag 61 aggttggtgc attctccaac attaaagttg gacttaagaa aatgctgggc gccgtaccca 121 aaggtgccaa agcgcccagc agtaatcaaa attgccccac agttaagatc gggcctaaaa 181 cgttgacaat tccccctgag cccccaaatg gtgaagacac cgtacaattt gatgcaaagt 241 cagaaactat aattgggcta ccagacttga caacggtgca aaacgaacac gaaaacactc 301 catacactgt ccctccatta agtgagaggg agcacaggcc ggccactgaa ccacttcctg 361 gcacaatact ggagatgtgg gatggtgagt tttaccatta ctccgtgtac gtcagtgatg 421 gcaaagctct gggggtccac aaaccaccgg cggctataag cctagcgacg atagagctca 481 cccccatatc actctactgg aggcccgttt acacccccaa ctacttggtc tctccagaca 541 cattaaaggg cctcgctggt gagaagttcc cctacacggc cttcagtaat aactgttaca 601 acttctgttg ttgggtgctt gagctcaacg acacgtggct taatagaaga tgcatttcca 661 gaactaccgg cttcttcaaa ccataccagt cttggaatag aaaacctctc ccaactgttg 721 atgatggaaa gatcaaaaag gtggccaatg cgatcctctg tgcactcggt tcgctgtttt 781 caaaaccaat caaagaccta ttaggtaaac tcaagccctt gaatctactg cacttgctcg 841 cgtcctgtga ttggacgttt gcaggcatag tggagacagt catcttaatg gcggaacttt 901 tcaacgtatt ctggaccccg ccagatgtct ctaattttat agcctccctg ataggtgatt 961 ttgaactaca agggcctgaa gacctggctg tagaactcgt ccccgtggtt atgggtggca 1021 tagggatggt tctcggcttc accgccgaga agataggccg catgctgtcg tccgctgcat 1081 caacactgcg ggcgtgcaaa gacctaggga actacgccct tgacatactc aaattggtca 1141 tgaaatggtt cttcccaaag aaggaagaga aggctgagat ggaaaccttg agggcgattg 1201 aagatgccgt ccttgatatg gaagctatag ggaataacca cctcacgacc cttctcaagg 1261 acaaagacag cctcacagct ttcatgaaga ccttggatct agaagaggag aaggcgagaa 1321 aactgtccac taaatcatct tcaccggaca tagtcggcac catcaacgcc atattagcta 1381 ggatagctgc tgctagatcc cttctacata aggccaaaga ggagatgttc agtagaatca 1441 gaccagtggt cgtcatgatc tcaggcagac ctggcattgg aaaaacccac atggcgaggc 1501 acttggctaa gagcatcgcc aacaccatga gtggcgatca gagagtcgga ctcgttccac 1561 gcaacggtgt cgatcactgg gacgcctaca ggggagagag ggtggtcttg tgggatgact 1621 acggcatggg gagccctgtt aaagacgccc taacactgca agagttggcc gacacatgtc 1681 cagtcacttt gaattgtgat aggattgaga ataagggaaa gatgtttgat agcgatgtca 1741 tcataatcac gaccaaccta gtcaaccccg cacccctcga ttatgtgaac ttcgaggcgt 1801 gttctaggag agttgacttc ctggtctatg cagagtcacc agaaattgaa aaggtcaaga 1861 gagacttccc tggccagcct gacatgtgga aagaccattt tagaccagat ttttcccata 1921 ttaagttgac tctagccccc cagggtgggt ttgacaaaaa tggcaatacc ccacatggca 1981 agggtaccat gcggtcctta acccaggggt ccctgactgc gagagttgca ggccttgtcc 2041 atgagaggag ggacgagttc cagctccaag gaaatgacct ccaaacatac aactttgaca 2101 ccaacagagt ctccgcattt agaaaattgg ctgcagataa caagtatggg atcatggaga 2161 cgatgagagt tggtgcagcg ctcaagagtg tgaagacctt ggaagatctt aaagctgcat 2221 tgagggatgt gaaattcaat gagtgtgaaa taatttacaa gaactctaag taccgagtct 2281 cttccaacgg caaaggctcg gtttctgttg acaaagttga agacaatgcc tcccaggctg 2341 tgaacgaggt gcattcagca cttcttagac tcaggcaggc aagggccaga tactacatca 2401 gctgcttcca agacctcgtt tacactctca tgcaggttgc cggggcatca ttcgtcgtca 2461 gtaggatctc cagaagattc tgctgggaaa ggtgggtcaa accgaccgag acccaggaag 2521 tgaatgagcc cgaaaaggaa gtggcccaag gtggatggga aattgagccc aaggacacag 2581 aaccggaagg taagaagggt aagaacaaga aaggaagggg caagaaacac acagccttct 2641 ctagcaaagg cctgagtgat gaagagtacg atgagttcaa gagaatcagg gaagaaagga 2701 acggaaagta ctccattgag gaatacctgc aggaccgaga ccgctattat gaagaggtgg 2761 cagttgctcg ggcgacagag gaggacttct gtgaagagga agaagccaaa ataagacaaa 2821 gaattttccg cccgacaagg aaacagagga aggaggaaag gggcgtgctt ggcttggtca 2881 ctggctcaga catcagaaag aggagacccg acgacttcca accaaagggc aacctatggg 2941 cagatgacac cagaagtgtg gactacaacg agaggcttga ttttgaagca cccccgagtg 3001 tttggtcaag aatagtccca ttaggcactg gttgggggtt ttgggtttca tccaaccttc 3061 tgatcacaac aacacacgtc ctgcctaaag gggtcaagga actctttgga gttgaaatca 3121 aacaaatcca agttcataag tctggagagt tttgcaggtt taggtttcca agacccatca 3181 ggccagatgt cacaggactc gtgctggagg aaggagcccc agagggcact gtctgttctg 3241 tacttgtaaa aagacccaca ggtgaaatga tcccccttgc agtgaggatg ggcacgcacg 3301 catccatgaa aatacagggc aggaccgttg gtggccaaat ggggatgctc ctcacaggag 3361 caaacgcgaa gaacatggac ctcggtactg gtcctggtga ctgcggttgc ccctacatct 3421 acaaacgtgg caacgacata gttgtcgcgg gtgttcacac cgcagcagcc cgggggggca 3481 acactgtcat atgcgccacc caagggcaag acggggaagc agtccttgag ggaaatgagg 3541 accttggcac ctactgtggc gccccaattc tgggtcctgg caaggcgccc aaactcagca 3601 cgaagaccaa gttttggcgc tcatcaccag atgccttgcc acctggcaca tatgaacctg 3661 cttacctagg aggcaaagac cccagggtgg aaaaaggtcc ctccctgcag caagtcatga 3721 gagaccagtt gagacccttc acagaaccca ggggcaaacc gcccagacct gcagtcctgg 3781 aggaagcaaa gaagacagtg atgaatgttt tagaacaaac cattgacccc gccaagccat 3841 ggtcctactc ccaggcatgt gcctcacttg acaaaaccac ctctagtggt agtcctcacc 3901 acgttaagaa aaatgaccac tggaatgggg agtccttcac tggtccactt gcagatcagg 3961 catctaaagc caatctcatg tatgaacagg ccaaacatgt gcagcccgtg tacacggcag 4021 cgcttaaaga tgagcttgtt aagactgaca agatctacaa gaagataaag aagaggctcc 4081 tatgggggtc ggaccttggc acaatgatca ggtgcgccag ggcttttggt ggtctcatgg 4141 acagcatgaa ggcgagttgt atagctcttc cttgcagggt aggaatgaac atgaatgaag 4201 atggccccat catatttgac aaacactcta agtacaggta ccactatgat gctgactatt 4261 ctaggtggga ctcaacccaa cagaggagca ttctctctgc cgctatggaa gtaatggtgc 4321 ggttttctgc tgaaccagaa ctggcacaag tggttgcaga ggaccttttg gctcctagcc 4381 agcttgacgt tggcgacttt gtcatctcag tccaggaggg tctaccatca ggagtcccat 4441 gcacatcaca atggaattca atagcacact ggatcctgac tttgagtgca atggcagaag 4501 tgtcaggtct ctcaccagat gttgtccaag ctcactcctg tttttcattt tacggggacg 4561 atgagatcgt cagtactgat atcaatcttg accccatgaa gttgacacag aaactcaggg 4621 agtatggtct ggtccccacc cggcctgata aaactgaagg ccccctcgtt ataactgaag 4681 acctcaccgg cctgacattc ctccgtaggt cgattgctcg ggacccagct ggttggtttg 4741 ggaaactgga ccaagactca attctcaggc agctatactg gacaaggggg cctaaccatg 4801 agaacccgta tgagagcatg gtccctcatt ctcagcgggc cacacagctc atggcccttc 4861 ttggtgaggc ctcgctgcat ggtccccagt tttacaagaa agttagcaag atggtcatca 4921 acgagattaa gagtggtggt ctggagtttt atgtgcccag acaagaggcc atgttcaggt 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgaaggtg 5041 tgaatgaaga tggcgtcgaa tgacgcagct ccatctaatg atggtgcagc aggcctcgtg 5101 ccagagatca acaatgaggt catgcccctt gagcccgtgg ctggtgcatc gctggcgaca 5161 ccagttgtcg ggcaacaaaa tataattgat ccctggataa gaaataattt tgtacaagct 5221 cctgcaggtg agtttacagt ttcccctaga aattcccctg gtgaaatttt acttgatttg 5281 gagttgggac cagagttgaa cccttatctc gctcatctgg cccgtatgta caatgggcac 5341 gctggtggca tggaagtgca aattgtgttg gctgggaacg cgttcacagc tggcaagatc 5401 atatttgctg ccatccctcc agggctccca tacgaaaatt tgtcaccttc acaaattaca 5461 atgtgccccc acgttataat tgatgttaga caattagaac cagtcctatt acctatgcca 5521 gatattagaa ataatttctt ccattacaat cagggtaatg atccaaaatt gaggttggta 5581 gctatgctct acactccttt aagggctaac aattctggtg atgatgtgtt tacagtttct 5641 tgtagggtcc tcactaaacc gtcacctgat tttgaattca catttttggt tccccccaca 5701 gttgaatcca agaccaagca attcacattg cccatcctca aaatatcaga gatgaccaat 5761 tcaagattcc cagtgccggt ggaaatgatg tacacagcaa ggaatgaaaa tcaagttgtc 5821 cagccacaaa atggtagggt cacactcgat ggcgagctat tgggcaccac acccttgttg 5881 gctgtcaaca tctgcaaatt caagggagag gtcatagcta agaatggaga tgtgagatcc 5941 tataggatgg acatggaaat caccaacact gatggcaccc caattgaccc cactgaagat 6001 acacctggtc ccattggatc acctgatttt caaggtatac tctttggtgt tgccagtcaa 6061 cgcaacaaga atgagcagaa ccctgccacg agagcccatg aagccaacat caatactggt 6121 ggggaccaat acgcccccaa attggcccaa gtgaaattct tctcagagtc ccaggatttc 6181 gaggtgcatc agcccacagt tttcacccca gttggtgtgg caggtgacac ttcccaccct 6241 ttcagacagt gggtcctgcc tcgatatggt ggacatctca ccaacaacac ccacttggct 6301 ccagcagtgg cccctttatt cccaggtgag cagattctgt tctttagatc acaaataccc 6361 agttcaggcg gccatgaatt gggttacatg gactgccttg tcccacaaga gtgggtccaa 6421 cacttctatc aagaagctgc cacagctcag tctgaggtgg cactcataag gttcatcaac 6481 ccagacactg gtagagtcct ctttgaggcc aagctacaca agcaaggctt tataactgtg 6541 gctcacactg gtgataaccc aattgttatg ccaccaaatg ggtatttcag atttgaagcc 6601 tgggtcaatc agttttactc actcgccccc gtgggaactg ggaatgggcg taggaggatc 6661 caataatggc tagtgctttc tttgcaaatt tggcaggagg cgttgcctcc aatggaatta 6721 gttcactcat aaatgctggg gctaatgcta ttaaccaaaa ggttgaattt gattacaata 6781 aacaactcca aaatgcatcc ttctcccacg ataaagaaat gctccaagcc caaattgaag 6841 ccactaaacg tttgcaacaa gagatgattg acataaaaca aggggtgctg acggctgcgg 6901 gattctctcc cacggatgcc gcgaggggct ctgtcggcgc gccaatgaca aaattagttg 6961 attggagtgg cactagatat tgggctcctg gtgccatgag gacaacaggc tattcaggga 7021 ctttcactca cttgccccct atgcagccta cttcatatgt taataatcag aatagacaac 7081 tttttaaagt agatccttct ccttcttctt caagtggttc ttctgtttct tctgttaaaa 7141 cacaatcaac tgctctctcg ggcacttcaa gggtggactc tccatcccag tcaaccctgt 7201 cgaccagacc gagctcaagg acatctgatt gggtgcgtag ccaaaatgaa aggttgagcc 7261 ccttcatgaa tggagcgttg caaacaacgt atgtaacgcc accatctagc agggtatcaa 7321 gtgtcagcac agtctcgacc gtgccgaaag aggttttgga ctcctggacg cctatgttta 7381 acactcacag gcagccgctc ttcgcccacc tgcgtaggcg aggggagtca cagatttagt 7441 gaaaagatta attaggaaag cttgattagt ttccttttct attattcctt taatttttct //