Typing tool
|
Complete norovirus genomes
MW305551 | GII.6 | ||
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GII.P7 |
ORF1: 1..5063 ORF2: 5044..6687 ORF3: 6687..7463LOCUS MW305551 7515 bp RNA linear VRL 06-JUL-2021 DEFINITION Norovirus GII isolate 103HBO nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305551 VERSION MW305551.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses reveal coexistence of viral populations evolving under recombination constraints JOURNAL Unpublished REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="103HBO" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Paraguay" /collection_date="12-Jul-2016" /note="genotype: GII.6[GII.P7]" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QPJ58989.1" /translation="FGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKKMLGAVPKGTKA PSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQNEHENTPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELT PISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSI SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL HLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARRLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRTRPVVVMISGRPGIGKTHMARHLAKSIANT MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPG QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER RDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVKTLEDLKVAL RDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLRLRQARARYY VSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASESEKEVAQGRWEIEP KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDF QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG INELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGE MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI VVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKF WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEA KKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFTGPLADQA SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL MDSMKASCITLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST WEGDRNLAPEGVNEDGVE" mat_peptide <1..971 /gene="ORF1" /product="p48" mat_peptide 972..2069 /gene="ORF1" /product="NTPase" mat_peptide 2070..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6687 /gene="ORF2" CDS 5044..6687 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58990.1" /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ QNVIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQENIPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRIQ" gene 6687..7463 /gene="ORF3" CDS 6687..7463 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58991.1" /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTVPSQST HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI" ORIGIN 1 cctttggcag ccaaaactct gtcaatgaca gtatcaacac cgccccttct aataaagaag 61 aggttggtgc attctccaac atcaaagttg gttttaagaa aatgctgggt gccgttccca 121 aggggaccaa agcacccagt agtgatcaac actgcccctc agttaagatc gggaccaaga 181 cattaacagt tccccctgag cccccaaatg gtgaagacac cgtgcagttt gatgcgaagt 241 cggaaactgt gcgcgggtta ccagacttga caacggtgca gaacgaacac gaaaacacac 301 catacactgt ccccccattg agtgaaaggg agcacagacc agctactgaa ccgcttcctg 361 gcacgatact ggagatgtgg gatggtgaat tctaccatta ctctgtgtac gtcagcggtg 421 gcaaagccct aggggttcac aagccccctg cagcgataag cctcgcgacg atagagctca 481 cacccatatc tctttattgg aggcccgttt acacccccaa ctatctggtc tgtccagaca 541 cgttgaaggg ccttgctggt gagaagttcc cctacacggc cttcagcaac aactgttaca 601 acttctgttg ctgggtgctc gagctcaatg acacgtggct tagcaggaga agcatttcta 661 ggaccaccgg cttcttcaaa ccataccagt cttggaatag aaaacccctt ccaaccgttg 721 atgatggaaa gatcaaaaag gtggccaacg caattctctg tgcacttgga tcactgtttt 781 caaaaccaat caaggaccta ttgggcaaac ttaaaccatt gaacttgctg cacttgctcg 841 catcatgtga ctggacgttt gcgggtatag tagagacagt catcctaatg gcggaacttt 901 tcggcatctt ttggacaccg ccagatgttt ccagtttcat agcctccctg ataggtgatt 961 ttgaattgca agggccggag gacctggctg tggagcttgt acccgtggtc atgggtggca 1021 taggaatggt tctcggcttt actgctgaga agataggccg catgttatcg tccgctgcat 1081 caacactacg ggcgtgcaaa gacttgggga attatgctct tgacatattg aaactggtta 1141 tgaagtggtt cttcccaaag aaagaagaga aagccgagat ggaaacccta agggcgattg 1201 aggatgccgt cctggacatg gaagctatag gaaataacca tctcacaacc ctcctcaagg 1261 acaaggatag cctcacggct ttcatgaaga ctctagatct agaagaagag aaggcgagga 1321 ggctgtctac caaatcatcc tcaccggaca ttgtcggcac cattaatgcc atactggcta 1381 gaatagctgc tgccaggtcc ctcttgcaca aggctaaaga agaaatgttc agcaggacca 1441 gacccgtggt tgtcatgatc tcaggtaggc ctggcattgg caaaacccac atggcgagac 1501 acttggccaa gagtatcgcc aacaccatga gcggcgacca gagagtgggg ctcgtcccac 1561 gcaacggggt tgatcattgg gacgcctaca ggggagagag ggtggtttta tgggatgatt 1621 atggcatggg aaaccctgtc aaagatgcct taacactaca agagctggcc gacacctgcc 1681 cagtaactct aaactgtgat aggattgaga acaaggggaa aatgtttgac agtgatgtca 1741 ttataatcac gaccaattta gtcaacccag cgcccctcga ttatgtaaac ttcgaggcgt 1801 gctccagaag ggtcgacttt ctggtctatg cagagtcgcc agaaattgag aaggttaaga 1861 gagacttccc cggccaacct gacatgtgga aggaccattt caagccagac ttttcccaca 1921 taaaactgac tctagcccca caaggtggat ttgacaagaa cggcaacacc ccgcatggta 1981 agggcaccat gcgatcccta acccaggggt ccctgactgc aagggttgca ggtcttgttc 2041 atgagaggag agacgagttt cagctccagg ggaacgacct ccaaacatac aactttgata 2101 ccaacagagt ctctgcattt aggaagctgg ccgcagacaa caagtatggg atcatggaga 2161 ctatgagagt gggcacagcg cttaagagcg tcaagacctt ggaagatctg aaagtagcac 2221 tgagggatgt gaaattcaat gagtgtgaga taatttacaa aaactccaaa taccgagtct 2281 cttccaatgg taaaggttct gtctctgttg acaaagttga ggaccaaaca tcccagaccg 2341 caaacgaagt gggtgcagca ctccttagac tcagacaggc aagagccagg tactatgtca 2401 gctgcttcca agacctcgtt tacactctaa tacaggtcgc cggagcatca ttcgttgtca 2461 acaggatctc taaaaggttc tgctgggaga gatgggtcaa accaaccgag acccaggaag 2521 cgagtgaatc cgaaaaggaa gtggcccaag gcagatggga gattgagccc aaggacacag 2581 aaccagaagg taagaagggt aagaacaaga aaggaagagg caagaaacac acagctttct 2641 ccagtaaagg cctgagtgac gaggagtatg acgagttcaa gagaatcaga gaagaaagga 2701 acggaaaata ctccattgag gaatacctgc aagaccggga tcgctactat gaggaagtgg 2761 cagttgcccg ggcgacagag gaggacttct gtgaagagga agaggccaag ataagacaaa 2821 gaatctttcg ccccacaaag aaacagagga aggaagaaag gggggtgctt ggtttggtca 2881 ctggctcaga catcagaaag agaagaccag acgattttca accgaagggc aacctgtggg 2941 cagacgacac caggagtgtg gactacaacg agagacttga tttcgaggcc cccccgagtg 3001 tctggtcaag aatagtccca ttgggcactg gctggggctt ctgggtctca tcaaacctcc 3061 tgatcacaac aacgcacgtc ctacctaagg ggattaatga actctttgga gttgagatca 3121 aacagattca gattcataag tctggagagt tctgcaggtt cagattccca agaccaatta 3181 gaccggatgt cacagggctc gtgttggagg aaggcgctcc agaaggcact gtctgctcca 3241 tactcgtaaa gagacctaca ggtgagatga tccccctggc agtgaggatg ggtacgcatg 3301 catccatgaa gatacagggt aggaccgtcg gtggccagat ggggatgctc ctcacagggg 3361 caaacgcgaa gaacatggat cttggcaccg gtcctggtga ttgcggttgc ccttacatct 3421 acaaacgtgg caatgatata gttgtcgcgg gtgtccacac cgcagcagcc cgaggaggca 3481 acactgtcat atgtgccact caagggcagg atggggaagc agtccttgag ggaaatgaga 3541 accttggcac ttactgtggt gctccaatct tgggtccagg caaggcgccc aaacttagca 3601 cgaagaccaa gttctggcgt tcatcaccag acgctttgcc gccaggcact tatgaacctg 3661 cctacttggg aggtaaggac cctagagtgg aaaaaggacc atccctgcag caagtcatga 3721 gggaccagct aaaacctttc acagaaccca ggggcaagcc acctagacct gcagtcttag 3781 aagaagccaa aaagacagtg atgaatgttc tagagcaaac cattgaccct gctaaaccat 3841 ggacctattc ccaagcatgt gcctcactgg acaagaccac ttccagtggt agcccccatc 3901 atgtcaggaa aaatgaccat tggaatgggg aatccttcac tggccccctc gcagaccaag 3961 catccaaagc caacctcatg tacgagcagg ccaagcatgt gcagcccgtg tacacggccg 4021 cacttaaaga tgaactagtc aaaactgata agatctacaa gaagataaag aaaaggctct 4081 tatgggggtc ggatcttggt acaatgatta ggtgtgccag ggcctttggc ggtctcatgg 4141 atagcatgaa ggcaagctgc ataaccctcc catgtagggt aggaatgaac atgaatgaag 4201 atggccccat catatttgac aagcattcta agtataggta ccattatgat gctgactatt 4261 ccaggtggga ctcaacccag cagaggagca ttctctcggc cgctatggaa gtgatggttc 4321 ggttctctgc tgaaccagag ctggcacaag tggttgcaga ggacctcctg gcacccagcc 4381 aactagatgt tggcgatttc gtcatctcag tccaggaggg tctgccatca ggggtcccat 4441 gcacatcaca atggaactca atagcacact ggatcctaac cttgagtgca atggcagaag 4501 tatcgggtct ctcaccagat gttgttcaag cccactcctg tttctcattc tacggtgatg 4561 atgagatcgt cagcactgac atcaaccttg accccatgaa gttgacacag aagctcagag 4621 agtatggcct ggtccccacc cgacctgaca aaactgaggg tcccctcgta ataactgaag 4681 atctcaccgg cctaacgttc ctgcgtaggt caattgcacg ggacccagct gggtggtttg 4741 gaaaattgga ccaagactca atcctcagac agttgtactg gacaaggggc cccaaccatg 4801 agaacccata tgagagcatg gtccctcatt cccagcgggc cacacaactt atggccctcc 4861 tcggtgaggc ttcactgcat ggtcctcagt tttacaagaa agttagcaag atggttatta 4921 atgagatcaa aagtggtggt ctggaattct atgtgcccag acaagaggcc atgttcagat 4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgagggtg 5041 tgaatgaaga tggcgtcgaa tgacgctgct ccatcgaatg atggtgctgc caacctcgta 5101 ccagaggcca ccaatgaggt tatggcactt gagccggtgg tgggagcctc aattgctgct 5161 cctgttgtcg gccaacaaaa tgtaattgac ccctggatta gagaaaattt tgttcaggca 5221 ccacagggtg agtttactgt atcaccaagg aactcacctg gtgagatgct tctaaatctt 5281 gaattaggcc ctgagctcaa cccttatttg agtcatttgt cccgcatgta taacggctat 5341 gctggtggta tgcaggttca ggtggtccta gctgggaatg cgttcacagc tggtaaaatc 5401 atctttgccg ccgtcccacc acatttccct gttgataaca ttagtgcagc ccaaatcaca 5461 atgtgccccc atgtaattgt tgatgtaaga cagcttgagc cagtgctttt gcccctccct 5521 gacataagga atagattctt tcattacaat caggaaaata tcccccggat gagacttgtg 5581 gctatgttgt atacacccct tagagcaaat tctggtgagg atgtgtttac ggtgtcttgc 5641 agagttctga cccgccctgc ccccgacttt gagttcacgt ttttggtgcc accaactgtg 5701 gagtcaaaga ctaagccctt tacactccct attctgactc ttggagagct gtccaactcc 5761 agattccccg ctccgataga catgttgtac actgacccca atgaggcaat tgtggtgcaa 5821 ccacaaaatg gcaggtgcac tctagatgga acacttcaag ggaccaccca actggtaccc 5881 acccagattt gctccttcag gggcacgcta attagtcaga cgtcgaggtc cgcagattca 5941 acagattcag ccccacgggc gaggaaccac cctctccacg ttcagctgaa gaacctcgat 6001 gggacaccat atgacccaac agatgaggtg ccagcagttt tgggtgccat agatttcaaa 6061 ggaactgtgt ttggggtcgc tagccaaaga aacaccacag ggaactctat aggagcaacc 6121 cgcgcccatg aagtgcacat agacaccaca aaccctagat ataccccaaa gcttggctct 6181 gtgttgatgt attctgaatc tactgatttt gatgatggac aacccacccg cttcaccccc 6241 attggtatgg gagccgatga ttggcaccaa tgggaattgc ccgaatattc tggtcacctc 6301 actcttaata tgaatttggc ccctgcagtt gcccccgctt tccctggtga gcgcattctc 6361 ttcttcagat cagtggtgcc gtctgctggt ggctatggat caggtcacat agattgcctc 6421 atcccacagg agtgggttca gcatttctat caggaggccg ctccatcaca gtctgcggtg 6481 gctcttatca gatatgtcaa ccctgacact ggaagaaaca tctttgaggc aaaactgcat 6541 agagaagggt tcatcactgt ggcaaattct ggaaacaacc ccatagttgt gcccccaaat 6601 ggttacttca ggtttgaggc ctgggtcaat caattctaca cactcacccc catgggaact 6661 ggacaggggc gcagaagaat tcagtaatgg caggagcttt cttagctgga ttggcaggtg 6721 acgccataac aagtggtgtc gggtccctaa tcaatgctgg ggccaatgca attaaccaaa 6781 aggtagaata tgactttaat aaacaactcc aattggcatc cttcaaacat gacaaagaga 6841 tgttgcaatc acaagtactg gccactaaac agctccagca ggagatgatg aacataaggc 6901 aaggggtctt gtccgctggc ggcttttccc ctacagatgc cgcgagaggt gctgtgaacg 6961 caccgatgac aaaaattttg gattggaatg gaacaaggta ctttgcccca aatagcatga 7021 agacaaccag ttattcgggc cagttttcca gcaaccccgt gcataggcag cccactttgc 7081 cccgttctga acccccaaaa attaaggtta acagtgattc tgctagtgtg tatagttctg 7141 catctactgt tccttcacaa tcaactcact caacggcttt gactgcgggg tctagctcat 7201 ctaggacaac atcctcttct gcagcagctt ccaccctatc taggactagt gactgggtga 7261 gaggacaaaa tgaaaggctt agcccgttta tggatggtgc tcttcaaaca acttttgtca 7321 caccaccatc gagcaaagct tcatcatatg ggtcggtctc aaccgtcccc aaagctgttt 7381 tggactcctg gacccccatg ttcaataccc ataggcagcc tctcttcgct cacgtgcgca 7441 ggcgagggga gtcacaaatt tagtgaaaag attgattagg ttttctttct ttcttctttt 7501 ccttttcttt ctttt //