Typing tool
|
Complete norovirus genomes
MW305510 | GI.3 | ||
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GI.P3 |
ORF1: 1..5368 ORF2: 5352..6989 ORF3: 6989..7636LOCUS MW305510 7709 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate 9-9 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305510 VERSION MW305510.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7709) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7709) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7709 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="9-9" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="USA" /collection_date="18-Jan-1988" /note="genotype: GI.3[GI.P3]" gene <1..5368 /gene="ORF1" CDS <1..5368 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58866.1" /translation="ADVSNNNANTNNDNIGSRLMARIRGRIGPQRGETTTKIKDANMA LDLLRRSQTPSPSRQESPPKSQRDRPPRTASEVKRVMGWDVEPEHQESTAKAWCDLTQ EEKEEIMRNNEKLFDAGGITPSTLPSTFERADPIDNPGEQQPVTWSASGGVDIGINDL TTVRGPFWNMCPLPPLDARNNGPAKEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSP QAAFSIPRITIHPLVAWWRVCYVPTNQQRLTYDQLKELENEPWPYASITNNCYEFCCR VMALDDTWLERRLVSTGKFNHPTQDWSQDTPDFHQDSKLEIVRDAVLSAINGLVSQPF KNILSKIKPLNVLNLLSNCDWTFMGVVELIVLLAELFDVFWTPPDVSSFIASLLPEFH LQGPEDLARDLVPLVLGGIGLAIGFTRDKVTKVMKSAVDGLRSATQLGQYGLEIFSII KKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMNVLDNEEEKARK LSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAA EHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIA DTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPE IEQMRRAHPGDANAIKDLYKRDYSHLKMELAPQGGFDSQGNTPFGKGIMKPTTLNRLL IQATALAMERQDEFQLQGAVYNFDEDRVSAFTSLARANGLGLISMATLGKRLRSVKSM EGLRNALVGYKIGECDIIWNTRVYSIKSDGSTVTIKEKQTPTSPQHQAICTATLALSR LRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPMLEGKHKEHNCRV HRAEAAGHGPIGHDGVIERYGLCESEQEEEGEQTVELPTANKEGKNKGKTKKGRGRKS NFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGE TEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGSEIRKRKPIDWTPPKNDWSEDTRTV NYDEQISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENLSNVAI HRVGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASM KIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGN TVVCAIQGGDGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTY EPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMD TPVAWSYNDACMSLDKTTSSGYPHHKKKNDDWNGNSFVRELGDQAAHANSMYELGKSM KPVYTAALKDELVKPDKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPI KVGMNAIEDGPLIYAEHSKYKFHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAA VVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCAMSEVTGLSPDV IQSQSYFSFYGDDEIVSTDIEFDPIRLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLV FLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQRKIQLISLLGEA ALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVN DDGV" mat_peptide <1..1183 /gene="ORF1" /product="p48" mat_peptide 1184..2272 /gene="ORF1" /product="NTPase" mat_peptide 2273..2872 /gene="ORF1" /product="p22" mat_peptide 2873..3292 /gene="ORF1" /product="VPg" mat_peptide 3293..3835 /gene="ORF1" /product="Pro" mat_peptide 3836..5365 /gene="ORF1" /product="RdRp" gene 5352..6989 /gene="ORF2" CDS 5352..6989 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58867.1" /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV PLEDVRNVLFHNNDNAPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLIKSMMVSRDHGQMVQFQNGRVTLDGQ LQGTTPTSASQLCKIRGNVFHANGGNGYNLTELDGSPYHAFEGPAPIGFPDLGECDWH MEASPTTQFDTGEVIKQINVKQESAFAPHLGTIQADGLDGVSVNTNMIAKLGWVSPVS DGHKGNVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGINGLSVPC TIPQEFVTHFVNEQAPTRGEAALLHYLDPDTNRNLGEFKLYPEGFMTCVPNSSGTGPQ TLPINGVFVFVSWVSRFYQLKPVGTAGPARRLGIRRS" gene 6989..7636 /gene="ORF3" CDS 6989..7636 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58868.1" /translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN SFNHDKEMMGLQVEASTALLQNSLGTRYNMLTRAGMTSADAARMVVGAPTTRVIDWNG TRVAAPMSTATTLRSGGFMTVPTVYRGGKNKQSIGGGFSNVNYDPSISSSRTSQWVSS QNSMRSTMEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK" ORIGIN 1 tgctgatgtc agcaataaca atgctaacac caacaatgat aacattggat cccgcctcat 61 ggcgaggatc cgtgggcgta taggcccaca acgtggcgaa acaaccacaa agataaaaga 121 tgccaatatg gcacttgacc tgctgcgccg gtcacaaaca ccttccccat cccggcaaga 181 gagccccccc aagagtcaga gagaccgccc ccctcggacc gcctctgagg taaagagggt 241 gatgggatgg gatgttgaac cagaacatca ggagagcacg gctaaggcat ggtgcgacct 301 cacgcaagaa gagaaggagg agataatgcg caataatgaa aagctcttcg acgctggggg 361 aattactcca tcgactttgc ctagcacgtt tgagagggct gacccaattg acaaccccgg 421 tgaacagcaa cctgtaacat ggtctgccag tggtggggtc gacattggca tcaacgatct 481 aaccactgtc cgtggcccat tctggaacat gtgccccctt ccaccattgg atgcccggaa 541 caatggcccc gctaaagagc cccttatagg ggacatgata gaattttatg aaggtcacat 601 attccattat gccatatata ttggacaggg taagaccatt ggggttcact caccgcaagc 661 agctttctcc atacctagga taactatcca tcctctagtg gcttggtggc gcgtgtgtta 721 cgtcccaact aatcaacagc gcctcacata tgaccaactc aaagaattag agaatgagcc 781 atggccctat gcttccatca caaacaattg ctatgagttt tgctgtaggg tgatggcact 841 tgacgacacc tggcttgaga ggaggttggt cagcactgga aaattcaacc atcccacaca 901 agattggtca caggataccc cagattttca ccaagactca aagcttgaga tagtaagaga 961 tgctgtgtta tcagctatca atggccttgt atcacaaccc tttaaaaaca ttttatcaaa 1021 gatcaaacca ttgaacgttc tcaatctctt gtcaaattgt gattggactt ttatgggggt 1081 ggtagaacta attgtactcc tagcagagct gtttgatgta ttctggactc caccagatgt 1141 ttcaagcttc attgcctcac tactacctga attccaccta cagggcccag aagacctagc 1201 tagggacttg gtccctctcg ttctaggtgg cataggcctg gctattggct tcacaagaga 1261 taaagtgaca aaagtgatga agagcgccgt cgatgggctg cgatcggcga cgcagcttgg 1321 gcagtacggg ctggaaatat tctcaatcat taagaaatat ttctttggtg gggaccaaac 1381 agaaaagacc ttgcggggta tagaggacgc agtgatagat atggaggtgt tatccagtac 1441 caatgtgaca caactagtta aagataagaa gctggccaga acatacatga atgtgttaga 1501 caatgaagag gaaaaggcaa ggaaactctc agtccgtagt gctgacccac acatagtgac 1561 ctcagtcaac aatttgatat cacggatttc tatggcaagg tcagccttgg ctaaagctca 1621 ggctgaaatg acatctcgcc ctcgcccagt ggtcataatg atgtgtggtc cccccggcat 1681 cggaaaaacc aaggccgccg agcacctggc cggccgactg gctgctgaaa tcagaccagg 1741 aggtaaggtt ggtcttgtgc cccgggaatc tatagatcat tgggacggat accatggtga 1801 ggatgtctta ttatgggatg actatggcat gtcaaaaata acagaggatt gtaacaagtt 1861 gcaagccata gctgacactg cacctctatc actcaattgt gacaggatag agaacaaagg 1921 catgcagttt tcttcagatg caataatcat aaccactaac gcccctggtc cggccccagt 1981 ggactttgtc aacctaggcc ctgtgtgcag gcgagtggat ttcctagttt actgctctgc 2041 ccctgaaatt gagcaaatga gaagagccca tcctggtgat gccaatgcta ttaaggactt 2101 atataaaagg gactattcac acctaaaaat ggaattagcc ccacagggtg gctttgatag 2161 ccaaggcaac acaccatttg ggaaaggtat tatgaagccc acaaccctca ataggctact 2221 tattcaggca acagcattag ctatggagcg gcaagatgag ttccagctcc aaggggctgt 2281 ctataacttt gatgaagaca gggtgtccgc ctttacaagc ttggcccgcg ctaatggttt 2341 ggggctcata agcatggcaa cactgggaaa aaggctcaga agtgtcaaat ccatggaggg 2401 cctgcgcaat gcattagtgg gctacaaaat aggagagtgt gacataatct ggaataccag 2461 agtgtattca atcaaaagtg acggcagcac tgtcacaatt aaggagaaac aaaccccaac 2521 ttcacctcaa caccaggcca tctgtacagc cactcttgca ctctctaggt tgcgggccgc 2581 tagagctctt gcgtacgcct cctgcctgca aagtgcagtg ctatcaatac tccaggtggc 2641 tggctctgcc ctggtggtga gtagggctgt gaagcgcatg tttggtacgc gcactgaaca 2701 acctatgtta gaaggcaagc ataaagagca caactgtaga gtgcaccgcg cagaggcagc 2761 cggccatggt cccattgggc atgacggggt cattgaacgc tacggcctgt gtgagagtga 2821 acaagaagaa gaaggcgagc aaacggttga gttacccact gctaataaag aaggtaaaaa 2881 caagggcaag accaaaaagg gccgtggacg gaaatccaat ttcaatgctt tctcaagacg 2941 tggcctcagt gatgaagagt atgaagagta caagaagatt agagaagaga agagtggcaa 3001 ttacagcatc caggagtacc tcgaggatcg ccagcgctat gaggaagaac ttgctgaagt 3061 gcaggctggt ggggatggtg gaattggtga gactgaggca gagattcgcc accgggtttt 3121 ctataagtca aaatccggca tgagaaagca acgccaagaa gagcggcgtc agctgggtct 3181 cgttagcggc tctgagattc gcaagcgcaa gcccatagac tggactcctc ctaagaatga 3241 ttggtcagaa gacaccagaa ctgtcaacta tgatgaacaa atcagttttg aggcccctcc 3301 ttcaatttgg agtagggtgg tgaagtttgg tagtggctgg ggtttttggg tgagctcaac 3361 agtgttcata accacaaccc atgtcatacc acctggggct aaagaaatct ttggtgaaaa 3421 tcttagcaat gtggccatcc acagggttgg tgagttcacc caattccgtt tctccaaaaa 3481 gatgagacct gacctcactg gtatggtctt agaagagggt tgcccagagg gaacagtgtg 3541 caccataatg atcaagagag attctggtga gctgttgcca ctcgccgtcc ggatgggggc 3601 agtggcttca atgaagatcc aaggtaaact tatgcatgga caatcaggaa tgttgctcac 3661 cggtgccaat gccaaaggca tggacctcgg aactatacct ggtgactgtg gggcacccta 3721 tgtccacaag agagggaacg attgggtagt atgtggagtc catgcagccg ccacaaaatc 3781 aggcaacact gtggtgtgtg ctatacaggg tggtgacggt gaagccacac tagagggtgg 3841 cggccaaaac aagggtcact atgcagggca tccaatacta aggtatggga atggcccttc 3901 tctatcaacc aagacaaaat tctggaagtc caccccccag cctttgcccc ccggtacgta 3961 tgagccagct tatcttggtg gcagagaccc tagagttgag gggggcccat ccttacagca 4021 agtgttgagg gaccagttga aaccattcgc cgagccccgt ggtaggttgc ccgaagcggg 4081 cctgttggaa gctgcagttg aaacggtcac taatgcaatt gaacaggtca tggacacacc 4141 ggtggcttgg agctacaatg atgcttgcat gtccctagat aagacaacca gttctggcta 4201 cccccaccac aagaagaaga atgatgactg gaatggaaat tcatttgtga gagaactggg 4261 cgaccaggcg gcgcatgcta atagcatgta tgaacttgga aagtccatga aacccgtgta 4321 cacagcggcc ctcaaagatg agttagtcaa gccagataag gtgtacacta aaatcaaaaa 4381 gagactgctt tggggcgcgg atcttggcac cgtcatccgt gctgccagag cttttgggcc 4441 attctgtgaa gctataaaac cccatgtgat aaaattgcct attaaggtgg gtatgaatgc 4501 catagaggat ggtcctttga tttatgcaga gcactctaaa tataagtttc attatgacgc 4561 tgactacaca gcttgggact caacacaaaa cagggagatt atgatggagt ctttcaatat 4621 tatgtgcaaa ctcacagcca acccttcctt ggccgcagta gtggcacagg atctgctctc 4681 cccatctgaa atggacgttg gcgattatgt gatcagtgtt aaagatggtc tgccatctgg 4741 ctttccatgc acctcacaag tgaatagcat caaccactgg atcctaactc tatgtgcaat 4801 gtcagaagtt actggcttgt cccctgatgt aatacaatca cagtcttatt tctcatttta 4861 tggtgatgat gaaatagtct cgacagacat agaatttgac ccaatcagat tgacacaaat 4921 actgaaggag tatggcttga aacccacaag acctgacaaa actgatggcc caattattgt 4981 cagacagcag gtggatggtc tggttttcct ccggcgcacc atctctaagg acgccattgg 5041 ataccagggg cgactcgacc gcaactccat tgaaagacag ctttggtgga cccgcgggcc 5101 aaaccacgag gacccattcg agacgctagt cccacactcg cagagaaaga tccagctaat 5161 ctccttgctg ggtgaagcag cactccatgg tgaaaaattc tacagaaaga tagccagtag 5221 ggttattcaa gaagtcaagg agggggggct tgagatttac attcctggtt ggcaggccat 5281 gttccgctgg atgcgattcc atgatttgag tttgtggaca ggagaccgcg atctcctgcc 5341 cgattatgta aatgatgatg gcgtctaagg acgccccaac aaacatggat ggcaccagtg 5401 gtgccggcca gctggtacca gaggcaaata cagctgagcc tatatcaatg gagcctgtgg 5461 ctggggcagc aacagctgcc gcaaccgctg gccaagttaa tatgattgac ccctggataa 5521 tgaataatta tgtacaagcc cctcaaggtg aattcactat atcgcctaac aatacaccag 5581 gtgatatttt atttgacctg caattaggcc cccaccttaa tcctttctta tcccatttgg 5641 cccaaatgta caatggttgg gttggcaata tgaaagtgaa ggtcctattg gctggtaatg 5701 ccttcacggc tggtaaaata attattagtt gtataccccc tggctttgct gcgcaaaata 5761 tctctattgc tcaggctaca atgttccccc acgtcatagc tgatgttagg gttttggaac 5821 ccattgaggt acccttggaa gatgtgagga atgtactgtt ccataacaat gacaacgcac 5881 caaccatgag gttggtgtgt atgctctaca ctcccttgcg agccagtggt agctcatctg 5941 gaactgatcc ctttgtgatt gctgggcgtg ttctgacatg cccaagccct gattttagct 6001 ttttgttctt ggttccccct aatgtagaac agaagactaa acctttcagt gtcccaaatc 6061 ttccattgaa tactctttca aattcaagag tcccttccct aattaaatca atgatggtgt 6121 ccagagacca tgggcagatg gtccagtttc aaaacggtag ggtcacccta gatgggcaac 6181 tgcagggtac cacgcccaca tcagctagcc agctgtgcaa aatcagaggt aatgtcttcc 6241 acgctaatgg tgggaacgga tacaacttaa ctgaactgga tgggagccca taccatgcat 6301 ttgagggccc tgcgccaata gggtttccag acctaggtga atgtgattgg cacatggaag 6361 cctcccccac cacccaattc gacactggtg aagttataaa acaaattaat gtcaaacaag 6421 aatcagcatt tgctccccac cttggtacca tacaagcaga cggcctggat ggtgtgagcg 6481 tcaacactaa catgatagct aaattgggat gggtgtctcc tgtcagtgac ggacataaag 6541 gtaatgtcga cccgtgggtc attccacgat atggatcgac tttgactgag gccgcccaat 6601 tagcccctcc aatatatccc cctggttttg gtgaggccat tgtgtttttc atgtcagatt 6661 ttcccattgc ccatggcatc aatggcttga gtgtgccttg caccatacct caagaatttg 6721 ttacccattt tgttaatgaa caggccccta ctagggggga agcagcccta ttgcattatt 6781 tagaccctga caccaataga aatcttggtg agtttaaatt ataccctgag ggctttatga 6841 cgtgtgtgcc taattccagt ggcactggtc ctcaaaccct ccctatcaat ggtgtttttg 6901 ttttcgtgtc ctgggtatcc agattctatc agttgaagcc tgtgggaaca gccggcccgg 6961 ctcgtaggct tgggattagg agatcataat ggctcaagct atacttggag ccatagcagc 7021 aacggcagct ggcagcgctg ttggtgctgg catacaagct ggaaccgaag ctgccctaca 7081 acaccagagg ttccagcaag acttgaccct acagaagaac tccttcaatc atgacaaaga 7141 gatgatgggc ctacaggttg aggcttcaac tgcactcctc caaaacagtt tgggcacacg 7201 gtacaatatg ctgaccagag cagggatgac atctgcagat gcggcacgca tggttgtggg 7261 ggcgcctaca acacgtgtca ttgattggaa tgggactagg gtcgccgcac ccatgtcaac 7321 cgcaacgaca cttaggtctg gtggtttcat gaccgtgcca actgtttata ggggtggcaa 7381 gaataaacaa tcaattggtg gtggcttttc taatgtaaat tatgatccct caatttcctc 7441 ttctcggact tctcaatggg tttcttcaca aaattcaatg cgttccacta tggaaccatt 7501 tcatccaggt gccctgagaa ccacatgggt cactccacct gggtcaactt ctacttctac 7561 aatttccaca gtttctactg tgccaaaatt ctttaataca gaaagattac ccttgttcgc 7621 gaacaggggt aagtgatttt gtaatatgaa ttagtgggca tcatattcaa tttggaatca 7681 attagatgtt tagattggca gatgatgtt //