Typing tool
|
Complete norovirus genomes
MW305508 | GI.7 | ||
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GI.P7 |
ORF1: 1..5362 ORF2: 5346..6965 ORF3: 6965..7612LOCUS MW305508 7612 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate DS386 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305508 VERSION MW305508.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7612) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7612) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7612 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="DS386" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GI.7[GI.P7]" gene <1..5362 /gene="ORF1" CDS <1..5362 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58860.1" /translation="ADVSKQNANTNNENIGSRLMARLKERISSQRGEGTTKIKNTEMA LELIRRSQTPSPTRSDPPPKSQRDRPPRTVSEVKQALGWGDSTHKDYGARAWCDLTAE EKKEILDNNERLFDAGGVTPSTVPSTFERYEAFDQTNDGHSVRWNESTGVDLGVGSLT TVAGPVWNMCPLPPIDSRNNGPASEPRIGDMIEFYEGHIFHYAIYLGQGKTIGVHSPQ AAFSIARITIHPMAAWWRVCYEPTDHQRLSYDQLKELENEPWPYASITNNCYEFCCRV MSLDDSWLQRKLVTSGRFNHPTQEWSRDTPDFHQDSKLEIVRDAILSAINGLVSQPFK NILSKIKPLNLLSLLSNCDWTFMGVVELVVLMAELFDIFWTPPDVSNFIASLLPDFHL QGPEDLAKDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIK KYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEEKARKL SVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVIMMCGPPGIGKTKAAE HLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIAD TAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEI EQTRRTHPGDTNAIKDLFKPDFSHLKMEIAPQGGFDNQGNTPFGKGAMKPTTLNRLLI QAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAALGKKLRSVNNME GLRNALKGYKITECDIVWNNRTYTIKGDGSNVGVTEKQVVASLQQQAVSSVTLALSRL RAARALAYASCFQSAVVTILQMAGSAVVISRAVKRMFGTHTNQPALEGKPKEHNCRVH RAEREGHGPIGHDGIIERYGLCESDQDEEKIVMEVPTADKEGKNKGKNKKGRGRKNNY NAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETE AEIRHRVFYKSKSGMRKQRQEERRQLGLVTGAEIRKRKPIDWTPPKNDWSEDTREVNY DEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPDAKEIFGEKLSDIAIHR VGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKI QGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTV VCAIQSGEGEATLEGGGQNKGHYAGHPILRYGSGPSLSTKTKFWKSTPQPLPPGTYEP AYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRMPEPSLLEAAVETVTNVLEQTMDTP VPWSYSDACMSLDKTTSSGHPYHKRKNDDWNGSAFVRELGEQAAHANNMYELGKSVKP VYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKV GMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVV AQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQ SQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQQIDGLVFL RRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQLISLLGEAAL HGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSLWTGDRNLLPDYVNDD GV" mat_peptide <1..1180 /gene="ORF1" /product="p48" mat_peptide 1181..2269 /gene="ORF1" /product="NTPase" mat_peptide 2270..2866 /gene="ORF1" /product="p22" mat_peptide 2867..3286 /gene="ORF1" /product="VPg" mat_peptide 3287..3829 /gene="ORF1" /product="Pro" mat_peptide 3830..5359 /gene="ORF1" /product="RdRp" gene 5346..6965 /gene="ORF2" CDS 5346..6965 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58861.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAAA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLHLGPHLNPFLQHLSQMYNG WVGNMRVRVMLAGNAFTAGKIIICCVPPGFASQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLFHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPSPDFNFL FLVPPSVEQKTRQLTVPNIPLNNLANSRVPAMINKMTVSTDQNQVVQFQNGRCTLEGQ LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH VSTFKVDQNLSGDPMSRLDIKQNAPFAPHLGSIEFTSDQDPTGDQLGTLAWVSPSTSG ARVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQVPCTLPQE FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPTNG VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV" gene 6965..7612 /gene="ORF3" CDS 6965..7612 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58862.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG VRIAAPTSTATTLRSGNFMNIPVTLKKESQNLSARSVGLSNPNYDSSTMVSRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRFFNTERLPLFANNRK" ORIGIN 1 tgctgatgtc agcaaacaaa atgctaacac caacaacgaa aacatcggtt ctcgcctcat 61 ggcgagactg aaggagcgta taagctccca acgtggtgaa ggcaccacaa agattaagaa 121 cactgaaatg gcattggaac tgatacgtag gtcccaaaca ccatccccaa cgcgctcgga 181 tcctcctccc aaatcacagc gtgaccgccc tccaagaact gtatcagaag taaagcaagc 241 attaggttgg ggtgattcca cccataagga ttatggggcc cgagcatggt gtgacctaac 301 agctgaagag aagaaagaga tcttggataa taacgagcgc ctctttgatg ctggcggtgt 361 gactccatca acagtgccga gtacttttga aagatatgag gcatttgatc aaactaatga 421 tggccattct gttagatgga acgaatccac gggagtagat ctaggtgtgg gttctctaac 481 cacagttgca ggtccagtgt ggaatatgtg tcctcttcca ccgattgatt cacgcaataa 541 tggtcctgca agtgaaccac gcatcgggga catgatagaa ttctatgaag gacacatatt 601 tcattatgcc atatatcttg gccaagggaa gaccataggg gtccactccc cccaggcagc 661 cttctccata gcacgcatta ccatacaccc catggcagca tggtggcgtg tctgctatga 721 accaacagac catcaacgcc tcagctatga ccaattaaaa gagctcgaga atgaaccatg 781 gccttatgca tccataacaa ataattgtta tgagttttgt tgccgtgtca tgtccctgga 841 cgactcttgg ttacagcgaa aattggtgac ctctggtagg ttcaatcacc ccactcagga 901 gtggtctagg gatacaccgg acttccatca agattcaaaa ttagagatag tgagagacgc 961 aattctgtct gctataaatg gcctagtctc tcaacctttc aaaaacattc tttccaagat 1021 taaaccatta aacttgttat ccttgttgtc aaattgtgat tggactttta tgggggtcgt 1081 ggagctggta gtgctaatgg ctgaactatt tgacatcttc tggacccctc ctgatgtctc 1141 caactttata gcatctcttt tgcccgactt tcacctacaa ggaccagagg atttggcaaa 1201 agatctggtc ccgctgatat tggggggcat tggcctggcc attggattca ccagagacaa 1261 gataacaaaa gtcatgaaga gtgctgttga tggcctgcgc tcagctacgc aactcgggca 1321 atatggcctt gagatattct caatcattaa aaagtatttc tttggtggag atcaaactga 1381 gaaaaccctc aagggcatag agaatgccgt catagacatg gaagtcttat cgagtaccaa 1441 tgtcactcag ttggtgcgcg ataagaaatt ggctaaaact tacatgaaca tcctagacaa 1501 tgaagaggaa aaagcaagaa aactctcagt acgtagtgct gatccacatg ttgtgacaac 1561 agttaacaat ctcatttcgc gcatatccat ggcgcgttca gccctcgcca aggcccaagc 1621 tgaaatgacc agtcgggcgc gcccggtggt cataatgatg tgtgggccac caggcatagg 1681 aaagactaag gctgctgagc atttagccaa ccgcttggct ggtgaaataa gaccaggggg 1741 caaagtgggc ttggtaccta gagaatccat tgaccattgg gatggctatc acggggaaga 1801 ggttctatta tgggatgact atggcatgtc caaaataaca gaagattgca ataaactaca 1861 ggccatagcc gacactgccc cgttcacact caactgtgat aggatagaga ataaaggcat 1921 gcaatttgta tctgatgcaa taataataac aacaaacgcc cctgggccag cccctgttga 1981 ctttgtcaac cttggtccag tatgtcggcg tgtggacttt ctagtgtact gcaccgcacc 2041 cgaaattgaa caaaccagga gaacccatcc tggagacacc aatgctatca aagacttatt 2101 caaaccagac ttttcccatt taaaaatgga gatagcgcca caaggggggt ttgataacca 2161 aggcaacacc ccttttggga agggtgctat gaagccaacc acacttaata gactacttat 2221 acaggctgtt gcattaacaa tggaaagaca agatgagttc cagatgcaag gggcggtgta 2281 caactttgat gaggaccggg tgacagcttt caccagcttg gctcgggcca atgggctagg 2341 actcttaagc atggcagcac ttggcaaaaa gttgcgaagt gtcaacaaca tggaaggact 2401 tcgcaatgcc ctcaaggggt acaagatcac tgagtgtgat attgtgtgga acaatagaac 2461 ttataccatt aagggagatg gatcaaatgt gggtgttact gagaaacagg tggtggcctc 2521 tcttcagcaa caagccgtca gctcagttac tttggcactt tccagattgc gcgccgcgcg 2581 agcgttggcg tatgcatctt gctttcagag tgcagtggtt accatcctac aaatggctgg 2641 gtctgcagtg gtgatcagca gagcagttaa gcgcatgttt gggacccata cgaaccagcc 2701 ggccctggag ggtaaaccca aggaacacaa ttgcagggtc caccgtgccg aaagggaagg 2761 ccatggacct attggtcatg atggtatcat agaacgatac ggcctgtgtg agagcgatca 2821 agatgaagaa aagatcgtga tggaagtgcc caccgctgac aaagaaggta aaaacaaagg 2881 taagaacaag aaagggcgag gtaggaaaaa caattacaac gccttttcca gacgaggcct 2941 aagtgatgag gagtatgagg aatataaaaa ggttagagaa gaaaagggag gcaactacag 3001 tatccaagaa taccttgagg atcgtcagcg ctacgaagaa gaactcgctg aggtccaagc 3061 tggtggagat ggcgggatcg gtgagacaga agcagagatt cgccatcggg tcttctataa 3121 atccaagagt ggcatgcgca aacagcgcca agaggagcgc cgacaacttg gattagttac 3181 aggtgctgaa atcagaaaac gtaaacccat agattggaca ccgcctaaaa atgactggtc 3241 agaagatact agggaagtca attatgatga acacatcagt tttgaagccc caccctctat 3301 ttggagtaga gttgtaaaat ttggcagtgg atggggcttc tgggtgagct caacagtttt 3361 tatcacaacc acacacgtca taccaccgga tgctaaagaa atttttggag aaaaactttc 3421 agatatagca atacacagag ttggggaatt cacacaattt agattctcta agaaaatgag 3481 acctgatctc agtggtatgg tgctggaaga gggctgccca gaaggaactg tgtgcaccat 3541 aatggtaaag agagattcag gtgagctgct accactggct gtacgcatgg gagctgtcgc 3601 atctatgaag atacagggaa aactcatgca tggtcaatct ggcatgttgc taactggtgc 3661 gaatgcaaaa ggaatggatt taggtactat ccctggtgat tgtggagctc catatgtgca 3721 caagagagga aatgattggg tggtgtgtgg agtgcacgca gctgcaacca agtcaggtaa 3781 tactgttgtt tgtgcaatac agtcaggtga aggtgaagcc acccttgaag ggggcggaca 3841 aaataaagga cattatgcag gccacccaat tctgaggtat ggcagtggac cctctctatc 3901 tacaaagact aaattctgga aatcaactcc ccaacccctc ccacctggaa cctacgagcc 3961 agcttacttg ggtgggcgtg accccagagt ggatggtgga ccatcacttc aacaggtcct 4021 gcgcgatcag ctcaaacctt ttgctgaacc tcgtggtagg atgccagaac caagcttact 4081 agaagcagct gtagagactg tcacaaacgt cttagagcaa accatggaca cacctgtacc 4141 atggagctac agtgatgctt gtatgtcact tgacaagacc accagctcgg gccatccata 4201 tcataaacgc aaaaatgatg attggaatgg cagtgcattt gtgcgtgagc ttggggaaca 4261 ggcagctcac gccaacaaca tgtatgaact aggcaaatca gttaaaccag tttacactgc 4321 agcactcaaa gatgaactgg taaaacctga aaaagtgtac acaaaaataa agaaaagact 4381 gctttggggt gcagaccttg gcacagtcat tcgagctgct cgagcatttg gcccattctg 4441 tgaagctata aaaccacatg taataaaact gccgatcaaa gttggcatga atgcaattga 4501 agatggcccc ctcatatatg ctgaacatgc taaatataag tatcactttg atgcagacta 4561 tacagcttgg gattcaaccc agaacagaga aatcatgtta gaatctttta acatcatgtg 4621 caaactcacg gctaatccat cattggccgc cgttgtcgcg caggacttac tgtccccatc 4681 ggaaatggat gtgggggatt acgtgattag tgtcaaagat ggtctcccct cagggttccc 4741 atgcacctca caagtgaata gcataaacca ttggatttat actctgtgtg ctctgtcgga 4801 ggtcacgggc ttggctcctg atgttttgca gtcccaatct tatttttcct tctatgggga 4861 tgatgaaatt gtatcaactg atgtggaatt tgacccaata aaactcaccc aagtgcttag 4921 ggaatatggt ttgaagccca ctcggcctga caaatcagaa gggcctatca tagtgaaaca 4981 gcaaatagat gggctagttt tcctgaggcg cactatatca aaagatgctg ccggttacca 5041 ggggcgtctg gaccgcaact ctattgaaag acaactgtgg tggactcggg gcccaaacca 5101 tgatgacccc tttgaaacac tgatacccca tcaacaaaga aagattcaat tgatttcctt 5161 acttggtgag gctgcacttc acggagagaa attctacagg aagattgcca acagagttat 5221 acaggaagtc aaggaagggg ggcttgagct ctacatacca ggttggcagg ccatgttccg 5281 ctggatgcgt ttccatgact tgagtttgtg gacaggagat cgcaatcttc tgcccgatta 5341 tgtaaatgat gatggcgtct aaggacgccc cctcaaacat ggatggcact agtggtgccg 5401 gtcagctggt tccagaggtt aatgcagctg aacccctacc tcttgaaccg gtagtgggcg 5461 ccgcaaccgc ggcggccact gctggacaag ttaatttaat agacccctgg attatgaata 5521 attttgtcca agcccctgag ggcgaattta ccatttcacc caacaatacc cctggagata 5581 ttttgtttga tctgcatttg ggaccacatc ttaatccctt cctccaacat ttatcccaaa 5641 tgtataatgg ctgggtgggg aacatgagag tcagagtcat gcttgcgggg aatgcgttca 5701 ctgctggtaa aatcataatt tgttgtgtcc caccaggttt tgcatcccaa aacatatcaa 5761 ttggacaagc cacgatgttc cctcatgtca tagcagatgt gagggtgctg gagcctattg 5821 aaatccccct tgatgatgta cgcaatgtct tatttcacac caatgagaac cgccccacca 5881 tgcggttgct ctgcatgctg tacacacccc tccgtgctgg aggtgcttca tcaggcacag 5941 atccttttgt cattgcaggt cgtgtgctaa cttgcccttc ccccgatttc aattttctgt 6001 ttcttgtgcc tcctagtgtg gaacagaaaa ctaggcaatt aactgtgccc aatataccct 6061 tgaataattt ggctaactcc agagtgcccg caatgataaa taagatgaca gtttctactg 6121 atcaaaatca ggtagtccag ttccaaaatg gtcgttgcac actcgaaggg caactcttgg 6181 gcacaacccc tgtttcagct agtcaagtgg cccgcatacg cggcaaagtt ttctccactg 6241 catcagggaa aggactcaac ctaactgagc tggatggaac cccttaccat gcatttgaga 6301 gtccagcccc cctcggtttc cctgacatag gagcttgtga ttggcatgtg tcaactttca 6361 aagtggatca aaatctttcg ggggatccca tgtccaggtt agatataaag caaaatgccc 6421 catttgcacc acatctaggt tccattgagt tcacctctga ccaagaccca actggggacc 6481 aattaggcac actagcctgg gtctccccct ccactagcgg agctagggtt gatccctgga 6541 agattccatc atatggctca acagtgactg agtccactca cctggcacca cctattttcc 6601 caccgggttt tggtgaagcc atagtctatt tcatgtcaga ttttcctatt gtgtcaggta 6661 acactgctca agttccctgc accctacccc aggaatttgt ttcacacttt gtagaacaac 6721 aggcaccaat ccgaggtgaa gccgccctac tgcattatgt agacccagac acccaccgca 6781 atttgggaga gtttaaatta taccctgatg ggttcatcac ctgtgtgcca aatacaggcg 6841 gtggccccca aaaccttcct acaaatggag tttttgtctt ttcttcttgg gtttctagat 6901 attatcaatt aaagcctgtg ggaacagccg gtccggctag gaggcttggt gtgaggagag 6961 tataatggcc caagccatta taggagctat tgccgccacc gctgctggca gcgcagtggg 7021 ggcaggtatc caagctggga cagaagcagc cttgcaatac cagaggtttc aacaggatct 7081 caccttacag gagaactctt ttaaacatga tgaaaggatg ttgggtttgc agattgaggg 7141 atcaaatgct ctattacaaa agaatctttc tacccgctat aatctattag ttggtgcagg 7201 tctttcttca gccgatgctg caaggtccat cgtcggggcc cccgtaacaa agattgtgga 7261 ttggaatggg gtgaggatcg ccgcccctac gtccactgcc accacccttc gatctggcaa 7321 ttttatgaac ataccagtca cacttaaaaa ggagtcccaa aacctgtcag cacgttctgt 7381 aggtctttcc aatcctaatt acgactcatc cacaatggtc tctagaacaa cccaatgggt 7441 ggagtcacaa aattcaatta gaaatttatc acctttccat agttcagccc tgaggaccac 7501 atgggtgact cctcctggct ctacttctac ttcaactttt tccactgttt cttcggcgcc 7561 acggttcttt aatactgagc gccttccttt gttcgcaaac aataggaaat ag //