Typing tool
|
Complete norovirus genomes
MW305504 | GI.4 | ||
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GI.P4 |
ORF1: 1..5326 ORF2: 5310..6944 ORF3: 6944..7570LOCUS MW305504 7660 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate 11692 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305504 VERSION MW305504.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7660) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7660) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7660 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="11692" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Japan" /collection_date="22-Jan-2013" /note="genotype: GI.4[GI.P4]" gene <1..5326 /gene="ORF1" CDS <1..5326 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58848.1" /translation="TAASAENTSDNSESIKNRFFTRLKNLGSNNKPIKIENTHMALNL ISRGPSPAPQERPPKDQRDKPPRNVTETQQAMGWVDPPVDQNLPTWEELSQTEKQEIL KNNSNWFDAGGLAPASIPSGYVKNTEQQPPDHQVKWSVNNGVDLGVDSLTTVPGPTWN LCPMPPIDQRNNGPAKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSIARI TIHPIAAWWRVCYVPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFCCRILNLQDTWL ERRLVTSSRFNHPTQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSKPFKDLLNKLKP LNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPDMHLQGPEDLAK DLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVLKKYFFGGDQ TEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKARKLSVRHADPH VVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLAN EIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNC DRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPDVEQTRRTNP GDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNRLLIQAVALTME RQDEFQMQGRVYDFDADRVSAFTSLARANGLGLISMASLGKKLRGVDSVHGLKNALSG YTITPCSIKWQARVYDIESDGTNVHIKENTSAQTQRQQSIDTAALALTRLKAARAAAY AACIQSAITTILQMAGSAIVINRAVKRMFGAHPSTIALEGPPREHRCRAHLAKAAGGG PIGHDDVIDKYGLCETEEEGTSEEMNVELPTATSEGKNKGKTKKGRGRRANYNAFSRR GLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHK IFYKSKKGRQNERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVDYNEKLSFEAPP TLWSRVVRFGSGWGFWVSPTVFITTTHVIPSGVREFFGEPIESIAIHRAGEFTQFRFS RKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMKIQGRLVHGQSG MLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGE TTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPAYLGGRDPRVKG GPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPTPWSFSDACQSL DKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVK PEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVGMNSIEDGPMIY AEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDV GDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDE IVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQ GRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSK VIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" mat_peptide <1..1156 /gene="ORF1" /product="p48" mat_peptide 1157..2245 /gene="ORF1" /product="NTPase" mat_peptide 2246..2848 /gene="ORF1" /product="p22" mat_peptide 2849..3256 /gene="ORF1" /product="VPg" mat_peptide 3257..3799 /gene="ORF1" /product="Pro" mat_peptide 3800..5323 /gene="ORF1" /product="RdRp" gene 5310..6944 /gene="ORF2" CDS 5310..6944 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58849.1" /translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE MSKIPNSSTQSNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR" gene 6944..7570 /gene="ORF3" CDS 6944..7570 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58850.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN SFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPMQRTASWVQSQNSS RTWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR" ORIGIN 1 tactgctgct agtgctgaaa acactagtga caatagtgaa tctataaaga accgtttctt 61 cacaagattg aagaatttag gttctaacaa taaacctata aaaattgaaa acacccatat 121 ggccctcaac ttgattagta gagggccatc tccagcccca caagaaaggc cccccaaaga 181 tcagagggac aaacccccaa ggaatgtgac tgaaactcaa caggcaatgg ggtgggttga 241 cccccccgtg gatcagaact taccaacctg ggaggaattg agtcaaacag aaaaacaaga 301 gatactcaag aacaattcaa actggttcga tgctggtgga ctggcaccag ctagtatccc 361 ttctggttat gtgaagaata cagagcagca accccctgac caccaggtta aatggagtgt 421 aaacaacggg gttgatctgg gggtggacag tctaactact gtgccaggtc caacatggaa 481 cctgtgcccc atgccaccaa ttgatcaacg aaacaatggc cctgcaaaag agccacttat 541 tggtgatatg atagaattct atgagggaca catttaccat tatgcaatat atattggcca 601 aggaaaaact gttggggtcc actcacctca agcggccttt tcaatagcca gaataaccat 661 acaccccatt gctgcttggt ggagggtttg ttatgtgcca acacctgatc agagattaaa 721 ttatgaccaa ctcaaagagc ttgagaatga gccatggcca tatgctgcag tcaccaataa 781 ttgctatgag ttttgctgca gaatcctcaa cctgcaggat acttggttgg agcgccgtct 841 agttacgtcc agtcgtttta accatccaac acaagactgg tctagggaca cgcctgactt 901 tcaacaagat agcaaactag aaatagtcag ggatgctgtg cttgctgcaa ttaatggctt 961 ggtatcaaaa ccctttaaag accttctaaa taaacttaag ccactcaacg tgcttaacct 1021 actctccaac tgcgattgga catttatggg agtagtggag acaataatat tacttatgga 1081 actatttggg atcttctgga acccccctga tgtgtccagc ttcatagcct cactactacc 1141 cgatatgcat ctgcaagggc cagaagatct ggctaaagat ttgataccac tggtgttggg 1201 gggtgtagga cttgcaattg gatttaccaa ggacaaggtt acaaaggtca tgaagagcgc 1261 tgttgaagga cttagggcag ccacacaatt gggccagtat ggcctagaga tatttgcagt 1321 cttaaagaaa tacttctttg gtggagacca aacagagaag actttaaagg acattgagac 1381 agccgtgatt gacatggagg tcatttcaac aactgctgtc actcaattag tcagggacaa 1441 gcaggctgcc cgaacctaca tgaacatctt ggatgctgaa gaagaaaagg caagaaagct 1501 ttcagtcagg catgcagacc cccatgtcgt gtccacgact aatgccctga tctcacgcat 1561 ttctttggct cgctctgcac ttgccaaggc acaagctgag atgaccaata gagttaaacc 1621 agtagtaata atgatgtgtg gccccccagg tataggcaag acaaaggcag ctgagtacct 1681 tgctaagaga ttggctaatg agatacggcc tggtggaaaa gtgggtctcg tgccaaggga 1741 agctgtggat cactgggatg gatatcatgg tgaagaggtt atgctgtggg atgattatgg 1801 catgtcaaaa atagccgatg actgtaataa gttgcaggcc atagccgaca cagctccact 1861 caccttgaat tgtgaccgga ttgagaagaa agggttacag ttcgtctctg atgccatagt 1921 gataacaaca aatgccccag gtccagcccc tgttgacttt gtcaatcttg gcccagtgtg 1981 ccgacgggta gacttcctgg tttattgcac cgcacctgac gttgaacaaa cacgtcgcac 2041 caaccctgga gacactggag cccttaagga ttgtttcaaa agtgacttct cccatctaaa 2101 aatggagttg gccccacagg gcggatttga taatcaaggg aacaccccat ttggcaaagg 2161 gactatgcgg cccaccacgt taaaccgtct tctcatacaa gctgtggcgc taaccatgga 2221 gcgtcaggat gaattccaga tgcaaggtcg agtgtatgat tttgacgctg acagggtatc 2281 cgctttcacc agtctagcga gagccaatgg tctgggcctc attagcatgg cctctctagg 2341 aaagaaattg aggggtgtgg actcagtcca tggcctcaag aatgcattat caggctacac 2401 cataacccct tgtagtataa aatggcaagc cagagtgtat gacattgaat cggatggcac 2461 taatgtacac ataaaggaaa acacctcagc ccagacacaa cgccagcagt caattgacac 2521 agcagctcta gcactcacta gactcaaggc agcacgggca gcagcgtatg cagcttgcat 2581 acaaagcgca ataacaacta tcttgcagat ggctgggtca gccatcgtta taaatcgtgc 2641 tgtcaaaagg atgtttggag cacacccaag caccatagcc ctcgaaggac caccaagaga 2701 acaccggtgt agagctcacc tggccaaagc tgcaggtggt ggaccaatag gtcatgatga 2761 tgtcattgat aagtatggtc tatgtgagac tgaagaagag ggcaccagtg aggagatgaa 2821 tgtggagctt cccaccgcca cttctgaggg taaaaataaa ggtaaaacca agaaaggaag 2881 aggcagaaga gccaactaca atgctttttc aaggcgaggt ctgagtgatg aagaatacga 2941 ggagtataag aagatcaggg aagaaaagaa tggtaactac agtattcagg aataccttga 3001 agacagacaa cgctatgaag aagaactcgc agaagtgcaa gctggtggtg atggaggcat 3061 tggtgagaca gaaatggaga tccgacacaa gatcttctat aaatccaaaa agggccgcca 3121 aaatgaacgc cgccagttag gattagtcac tggtagtgac attagaaaga gaaaaccaat 3181 tgattggacc ccccccaaga atgattgggc agatgataat agggaagtgg attacaatga 3241 aaaactcagt tttgaagccc caccaaccct ctggagccgg gttgtgagat ttggctctgg 3301 gtggggcttt tgggtgagcc cgactgtttt tatcaccacc acccacgtta taccatctgg 3361 agtgcgtgaa ttctttggag aacccatcga atccattgca atccaccgtg ctggtgaatt 3421 tacacaattc aggttttcac gcaaagtccg cccagatttg actggaatgg tgttggagga 3481 aggctgccct gaaggtgtcg tgtgttccat cctcattaaa cgcgactctg gtgagctact 3541 accccttgct gttcgaatgg gcgctatagc gtccatgaag atccaaggga ggttagtgca 3601 tggtcaatct gggatgctgc ttactggggc caacgccaag gggatggact taggtaccct 3661 accaggtgat tgtggtgccc cttatgtgta caagaggaac aacgactggg tggtttgtgg 3721 tgtacatgca gctgccacga aatcaggcaa cactgtggtg tgtgctgtcc aggctgggga 3781 gggtgaaacc accttagagg gaggtgataa aggccactat gctggtcatg agataatcaa 3841 gcacagtaag ggcccagctt tatcaaccaa gaccaagttt tggaggtcaa cccctgaacc 3901 actgccgcca ggtgtttatg aaccagcata ccttgggggc cgtgacccaa gggtaaaagg 3961 tggaccttcc ctacaacaag tcctgcgtga ccagctgaaa ccgttcgctg agccacgagg 4021 tcgaatgcca gaacctggtc tacttgaggc agccgtcgaa actgtcacat ccatgcttga 4081 acaaacaatg gacacaccaa ccccttggtc tttctctgat gcatgtcagt cactcgacaa 4141 aaccacaagt tcggggcacc cataccataa aaggaaaaat gatgattgga atggaacttc 4201 atttgttggg gagcttggag aacaggcggc acatgccaac aacatgtatg agttaggtaa 4261 gtccatgaaa ccactttaca ctgcagccct aaaagatgag ttagtcaagc ctgagaaagt 4321 ctatcaaaag atcaagaaaa ggctcctctg gggtgctgat ctctcaacag ttataagagc 4381 tgccagagcc tttggaccat tttgtgacgc cataaagcct catgtcatta aactccccat 4441 caaggttggt atgaactcca tagaagatgg cccaatgatt tatgcagaac atgcaaagta 4501 taagaatcat tttgatgcag attattcggc ctgggattct acacaaaata gacagatcat 4561 gactgagtcc tttgcaatca tgtgccgcct cacggcgtca cctgagttgg cctctgttgt 4621 agccaaagat ctacttgcac cctcagaaat ggatgttggt gactacatca tccgtgtgaa 4681 ggaaggcttg ccatcagggt tcccttgcac gtcacaggtg aatagtataa atcattggtt 4741 aatcacattg tgtgctatgt ctgaagtcac aggcttatca cccgatgtca tacaatccca 4801 gtcttacttt tctttctatg gtgatgatga aatagtctca acagatattg attttgaccc 4861 cgcccgcctc actcaagtac ttaaagaata tggattgaga cccacccgac cagacaagtc 4921 agaaggaccc atcatactta gaagacaggt ggatggtctt gttttcttaa ggaggacaat 4981 ctcaaaagat gctgcgggct tccaggggag gctggatagg ggctcaattg aaaggcagct 5041 ctggtggact cgaggcccta accatgatga ccccagtgag actctaatcc cacaccccca 5101 gaggaaagtt cagcttatat cccttcttgg cgaggcttcc ctccacggtg agaaatttta 5161 caggaaaatc tccagtaaag ttatacagga gataaagact ggtggtttgg aaatgtatgt 5221 gccaggctgg caggccatgt tccgctggat gcgcttccat gacctcggat tgtggacagg 5281 agatcgcaat ctcctgcccg aattcgtaaa tgatgatggc gtctaaggac gctacaccaa 5341 gcgcagatgg cgccactggc gccggccagc tggtaccgga ggttaataca gctgacccta 5401 tacccattga ccctgtggct ggctcctcta cagcacttgc cactgcaggc caagttaatt 5461 tgattgatcc ctggataatc aataattttg tgcaagcccc ccagggtgaa ttcacaatat 5521 ccccaaacaa tacccccggt gatgtgcttt ttgatttgca gttaggacct catttaaacc 5581 ctttcctctc ccatctctct cagatgtaca atggctgggt gggcaacatg cgagtgcgtg 5641 ttgtcttggc tggtaatgct ttcacggctg ggaaggttat aatttgttgt gtcccccctg 5701 gctttcaatc tcgtactctt tccatagctc aggctacttt attcccccac gttattgctg 5761 atgttaggac ccttgaccct gtagaagtgc ctcttgaaga tgttaggaac gtgttgtatc 5821 ataataatga cacccaaccc accatgcgcc tcctttgcat gctgtacacc cctctccgca 5881 ccgggggagc gtctggtggg actgattctt tcgtggtagc tgggcgtgta cttacttgcc 5941 caggccctga ctttaacttc ttattcttgg tccctcctac agtcgagcaa aagactcgcc 6001 ctttcactgt gcctaatatc cctttgaagt atctatctaa ctccagaatc ccaaacccca 6061 ttgaaggtat gtcattgtca cctgatcaga ctcaaaatgt ccaattccag aatggcaggt 6121 gcacaattga cggtcaaccc ctcgggacta cacctgtctc ggttagccag ttatgtaagt 6181 ttaggggtag gataacatct ggacagaagg tgctcaattt gacagagttg gatggttcac 6241 cttttatggc ctttgctgcc cctgctcctg cgggcttccc agatcttggg tcctgtgatt 6301 ggcatattga gatgagtaaa atcccaaatt ctagcaccca gagtaatcca atagtggtca 6361 attctgtcaa gcccaatagt caacagtttg tccctcattt gtcaagcatc acccttgatg 6421 acaatgtttc tagtgggggt gattatattg gtactataca atggacctct cctccttctg 6481 attctggcgg agccaataca aacttttgga aaatccctga ctatgggtct agcttggctg 6541 aagcttcaca gttggccccc gctgtctatc cacctggttt caatgaagtg attgtgtatt 6601 ttatggcatc tatacctggc cctaatcaat ctgggtcccc taatttggtg ccatgcctac 6661 tcccccagga atatataaca catttcatta gtgaacaggc ccccattcag ggtgaggctg 6721 ccttactcca ttatgtggac ccagacacca atcgtaattt gggtgagttt aaattgtatc 6781 ctggtggtta tttaacctgt gttcctaata gttctagtac tggacctcaa cagcttcctc 6841 ttgatggtgt ttttgtcttt gcttcttggg tctctagatt ttatcaatta aagcctgtgg 6901 gaacagccgg accggctaga ggtaggcttg gtgtccgtag ataatggccc aagccattat 6961 aggagccatt gccgcctctg cagccggcag cgccctgggt gctggcatcc aggccggtgc 7021 tgaagctgcg ttacaggcac agagatatca acaagatttg actttgcagc aaaattcttt 7081 taatcatgat aaagaaatgt taggttatca agtggaaatg tccaataagt tgttagctaa 7141 gaatcttaat acccgctatt ctcttctcca ggcgggtggc ctctcatcct ctgatgcggc 7201 tagggctgtg gccggggccc ctgtcaccag gctggtcgac tggggtggag tgcgtgttgc 7261 agcaccacaa tcgtctgcca ccacattgag atctggcaat ttcatggcag tgccgctccc 7321 agctcagcca aagcagaagc cccttgccag tgagggttat tccaaccccg cttatgaccc 7381 tatgcagcgt acagcttctt gggttcaatc tcaaaattcc agtcggactt ggtctcctta 7441 ccataggcag gcccttcaga ctgtgtgggt gaccccccct ggctctacct cttcttcttc 7501 tgtttctacc gcccctcggg ggtactttaa tacagatagg ttgcctctgt tcgcaaactt 7561 gaggcgttaa tgttgtaata agattagtga gcatcctatt caagtttggc tttgtataat 7621 ttggttatat ttggctttta attttgattt ggttgatgtt //