Typing tool
|
Complete norovirus genomes
MW305503 | GI.6 | ||
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GI.P6 |
ORF1: 1..5332 ORF2: 5316..6938 ORF3: 6938..7567LOCUS MW305503 7575 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate 11662 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305503 VERSION MW305503.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7575) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7575) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7575 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="11662" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Japan" /collection_date="27-Jun-2013" /note="genotype: GI.6[GI.P6]" gene <1..5332 /gene="ORF1" CDS <1..5332 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58845.1" /translation="TAASASSTGDNSNTMKDRFLAKLKSLGNTKPIKIENTQMALGLL SREPSPSPSRDPPKQQRDRAPRNVAETQQAMGWTDPPVDQNLPTWEELSQSEKQKIMA ENSRWFDAGGLGPATLPSNYCRVQDSGDGDHQVKWSAKGGVNLGVDTLTTVQGPPWNL CPLPPADQRNSGAAKEPLIGDMIEFYEGHIYHYAMYIGQGKTIGVHSPRAAFSIPRIT IHPIAAWWRVCYVPTQEQRLSYDQLKELENEPWPYAAVTNNCYEFCCRIMDLQDTWLE RRLVTSGRFNHPTQDWSKDTPDFQQDSKLEVVRDAVLAAINGLVSRPFKNLLNKLKPL NILSLLSNCDWTFMGIVETIILLMELFGVFWDPPDVSNFIASLLPDMHLQGPEDLAKD LIPLILGGIGLAIGFTKDKVTKVMKSAVDGLRAATQLGQYGLEVFAVIKKYFFGGDQT EKTLKDIETAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARKLSVKHADPHV VSTTNALISRISMARSALAKAQAELTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANE IRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCD RIEKKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQVRRVSPG DTGALKDCFKDDFSHLKMEIAPQGGFDNQGNTPFGKGVMRPTTINRLLIQAVALTMER QDEFQMQGPTYDFDSDRISAFTSLAKANGLSLIGMASLGKRLRSVNSVHGLKNALAGY TITPCTIKWQARFYDIESDGSVVKICENTTAQTQRQQSIDTAVLALTRLRAARAAAYA SCLQSAITTVLQMAGSALVIHRAVKRMFGTHTNAVSLEGPDREHRCRVHQAKANGRGP IGHDDVIEKYGLCETEDESTQEQEATMELPTASHEGKNKGKTKKGRGRRANYNAFSRR GLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIGETEMEIRHR VFFKSKTKKNRQEERRQLGLVTGSEIRKRKPIDWTPPKNEWADDDREVDYNEKISFEA PPTMWSRVTRFGSGWGFWVSPTVFITTTHVIPTGAKEFFGEPLDSIAIHRAGEFTQFR FSRKIRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMKIQGRLVHGQ SGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGE GETTLEGGDKGHYAGHEIVRNSKGPALSSKTKFWRSTPEPLPPGVYEPAYLGGKDPRV KGGPSLHQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQVMDTPTPWSYADACQ SLDKTTSSGHPYHKRKNDDWNGTTFVGELGEQAAHANNMYEQGKSMKPLYTAALKDEL VKPEKVYQKIKKRLLWGADLSTVIRSARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPL IYAEHAKYKNHFDADYSAWDSTQNRQIMMESFSIMCRLTASPDLAAVVARDLLAPSEM DVGDFVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLAPDVIQSQSYFSFYGD DEIVSTDIDFDPVRLTQVLREYGLRPTRPDKSEGPIILRRSVDGLVFLRRTISKDAAG YQGRLDRNSIERQLWWTRGPNHDDPNETLIPHPQRKVQLISLLGEASLHGEKFYRKIS GRVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRDLLPEFVNDDGV" mat_peptide <1..1153 /gene="ORF1" /product="p48" mat_peptide 1154..2242 /gene="ORF1" /product="NTPase" mat_peptide 2243..2848 /gene="ORF1" /product="p22" mat_peptide 2849..3262 /gene="ORF1" /product="VPg" mat_peptide 3263..3805 /gene="ORF1" /product="Pro" mat_peptide 3806..5329 /gene="ORF1" /product="RdRp" gene 5316..6938 /gene="ORF2" CDS 5316..6938 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58846.1" /translation="MMMASKDAPTSPDGASGAGQLVPEVNTADQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHMIADVRTLEPVEL PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPTLIQGMFVSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFVPLESPAPVGFPDLGGCDWHV GFTFEARDQDPSQNVTFATNDSSFVPYLGSISPHNGDGFHSGDIIGSLDWISAPSDGS TLDVWSIPKYGSSLPDVTHLAPAVFPPGFGEVILYFHSKFPGSGPTDKLRVPCLIPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSISSGPQTLPTN GVFVFVSWVSRFYQLKPVGTASMARRLGLRRI" gene 6938..7567 /gene="ORF3" CDS 6938..7567 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58847.1" /translation="MAQAIIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN TFQHDREMIGYQVQASNALLAKNLNTRYTLLQAGGLSSADAARAVAGAPVTRIVDWNG TRVAAPTSSATTLKSGGFMPVPIPLTQKSKQLIMTGQDNPNYAASSISRTASWVQSQN SLRSMPPFHNDALRTVWVTPPGSSSTSSVQSSYYGVFNTDRLPLFANRR" ORIGIN 1 tactgctgcc agcgcttcaa gcactggtga caatagtaac acaatgaagg atcgcttttt 61 agcgaaactc aagagtttgg gcaacaccaa acccataaaa attgaaaaca cacagatggc 121 tcttgggctt ctgagccggg agccgtcgcc atcgcccagc cgtgaccccc ctaaacaaca 181 acgggacagg gcaccacgga atgtggctga aacccaacag gcaatgggat ggacagaccc 241 acctgttgac caaaatctgc caacatggga ggagctcagc cagtctgaga aacagaagat 301 catggctgag aattcaaggt ggtttgatgc tggtggccta ggtccagcta ccctaccatc 361 gaattactgt cgtgtacaag acagtggcga tggtgaccat caggttaaat ggagtgctaa 421 aggtggtgtc aacctgggag ttgacacctt aacaaccgtc cagggccccc catggaactt 481 gtgcccactt cccccagccg atcaacgcaa tagcggggca gctaaagagc ccctgattgg 541 agacatgatt gagttttatg aagggcacat atatcattat gccatgtaca taggccaggg 601 aaaaacgatt ggtgtgcact cccctagggc cgctttttcc atacctagga ttaccataca 661 cccaatcgct gcttggtgga gggtgtgcta tgtccccacc caagagcaga ggctaagtta 721 tgatcaactc aaggaacttg aaaatgaacc ttggccatat gcagctgtca ccaacaactg 781 ctacgagttt tgctgcagga taatggatct gcaggatact tggttggaga ggagattggt 841 gacatcaggc cgctttaacc acccaactca ggactggtcc aaggacaccc cagatttcca 901 acaagacagc aagctagagg ttgttcgtga tgccgttcta gcagctatta atggcctggt 961 ctcacgcccg ttcaagaatt tgctaaataa gctcaaacca ttaaacatcc tcagcctcct 1021 atccaattgt gattggacct tcatgggcat agttgaaacc ataatattgc taatggagct 1081 ctttggggtc ttttgggatc cccctgatgt gtccaacttc atagcttccc tccttcctga 1141 catgcacctt caaggcccag aagatctggc taaggatctg ataccactta tattgggtgg 1201 aatcgggttg gccataggct tcactaagga caaagtgaca aaggtgatga agagtgcagt 1261 tgatggtttg cgtgcggcca ctcaactagg gcaatatggc ttggaagtct tcgcggtcat 1321 caagaaatac ttctttgggg gtgatcaaac agagaagaca cttaaagaca ttgagacagc 1381 agtcattgac atggaggtca tctccacgac agccataaca caattggtca gggacaaaca 1441 atccgccagg acctatatgg ccatactaga tgctgaagag gaaaaggccc ggaaactgtc 1501 tgtgaaacat gctgaccccc acgtggtgtc aaccaccaac gcactgattt cgcgcatctc 1561 aatggcgcgt tctgccctgg ctaaagcgca agctgagctg acaaacagag ttaagccagt 1621 ggtgataatg atgtgtggcc ctcctggtat aggcaagacg aaggctgccg agtacctagc 1681 caaacggctt gccaatgaaa tacgtccagg tgggaaagtt ggtctggtcc cacgtgaagc 1741 tgtcgaccac tgggacggtt accatggtga ggaggttatg ttgtgggatg actatgggat 1801 gtcaaagata gcagatgact gcaataaact gcaagcaatt gctgacacag ccccattaac 1861 actcaattgt gaccggatag aaaagaaagg tatgcagttt gtgtcagatg ctattgtcat 1921 aaccaccaat gccccagggc cagcccctgt tgactttgtc aatttaggac ctgtctgtcg 1981 gcgtgttgac ttcctggtct attgttctgc cccagaagtc gaacaggtgc gtcgtgttag 2041 ccccggagac actggcgcac tcaaagattg cttcaaggat gacttctcac accttaaaat 2101 ggaaattgca ccacagggtg gatttgacaa tcaagggaac acaccatttg gcaagggcgt 2161 catgcgcccc accaccataa acagactttt gattcaggcg gttgctctca ccatggaacg 2221 ccaggatgag tttcagatgc aaggaccaac ctacgatttt gactcagaca ggatttcagc 2281 tttcactagt ctagccaaag ccaatggttt aagcttgatt ggtatggcaa gtctcgggaa 2341 gagactacgc agtgtcaact cagtccatgg cctcaaaaat gccctagccg gttacactat 2401 cacaccatgt accataaaat ggcaagccag gttttatgat atagaatctg atggtagtgt 2461 ggtcaagata tgtgagaaca caactgcaca aacccagcgc caacagtcca ttgataccgc 2521 tgtcctcgcg ctcacccgac tcagggctgc aagggccgct gcgtatgcat cctgtctgca 2581 gagtgctatc acaactgtgt tgcagatggc aggttcagcc cttgtcatac atcgagccgt 2641 caagcgcatg ttcggcaccc acaccaatgc cgtctcccta gagggtcctg acagggaaca 2701 tcgctgtcga gtgcatcagg ctaaggctaa tggtcgcggc cccattggac atgatgatgt 2761 tatagagaaa tatgggttgt gtgaaacaga agatgagtcc acccaggagc aggaagccac 2821 catggaactg cccactgcaa gccatgaagg caagaacaag gggaaaacca agaagggccg 2881 aggccgaaga gccaactaca acgccttctc tagacgtggc ctaagtgatg aggagtacga 2941 ggagtacaag aaggttagag aagagaaagg tggaaactac agcatccaag agtacctcga 3001 agacaggcaa cgctatgagg aggagatggc tgaggtgcag gccggcggcg atggtggaat 3061 aggtgagacg gagatggaaa tacgtcatcg ggtcttcttt aagtccaaaa caaagaagaa 3121 tcgccaggag gaacgccggc agcttggctt agtcacgggc agtgagataa gaaagagaaa 3181 gcccatagat tggacccccc ccaaaaatga atgggcagac gatgacagag aagtggatta 3241 caatgagaaa ataagttttg aagcccctcc caccatgtgg agccgagtta cacgattcgg 3301 ttccgggtgg gggttttggg ttagtcccac ggtgttcatc accaccaccc atgttatacc 3361 aactggggcc aaagaattct ttggggaacc attagattcc attgccatac accgtgcagg 3421 agagttcaca caattccgct tctcaagaaa gatacggcca gatctaacag ggatggttct 3481 tgaggaaggg tgtcctgaag gagtggtttg ctcaatcctg atcaagcgtg actcaggtga 3541 gctgctaccg ttggctgtgc gcatgggggc tatagcttca atgaaaatac agggccggtt 3601 ggtccatggt cagtctggta tgctcctaac tggtgccaat gcaaaaggta tggacctggg 3661 tactctccca ggtgattgtg gggcgcccta tgtctacaag agaaacaatg attgggtggt 3721 ctgcggtgtc cacgcagcag ccaccaagtc tggtaacact gtggtctgtg cagtacaagc 3781 aggtgagggg gagaccactc tagaaggagg tgataaggga cattatgctg ggcatgaaat 3841 agtcaggaat agcaagggcc ccgcactctc atctaaaact aagttctgga gatcaacacc 3901 agagcccctg cccccaggtg tctatgaacc agcttatcta ggaggcaaag atcctagagt 3961 caagggtggt ccttctttgc accaggtcct tcgggatcaa ctgaaacctt ttgcagaacc 4021 acgtgggcgc atgccagagc caggtttgct ggaggctgct gttgagacag tgacttctat 4081 gctggaacag gttatggata cgcccacacc atggtcatac gcagatgctt gccagtcatt 4141 agacaagacc accagttctg gacaccccta ccacaagagg aagaatgatg attggaacgg 4201 caccaccttc gtgggggagc ttggtgagca ggcagcccat gcaaacaaca tgtatgagca 4261 aggcaagtcc atgaaacccc tatacacagc agccctcaaa gatgaacttg tcaaaccaga 4321 gaaggtctat caaaagatca agaaaaggtt gctgtgggga gctgacctgt cgaccgttat 4381 acggtccgcg cgggcttttg gccccttctg tgatgcaata aaatcccatg tgatcaaatt 4441 gcccattaag gttggtatga actcaattga ggatggccct ctaatctatg ctgaacatgc 4501 aaaatataag aatcactttg atgcagatta ttcagcctgg gactcaacac aaaatagaca 4561 aatcatgatg gagtccttct caatcatgtg tcgcctcact gcctcaccag atttggcagc 4621 tgttgtggct agagacctgt tagctccttc tgagatggat gtgggagact ttgtaattag 4681 agttaaggag ggtctcccat caggcttccc ctgtacttca caagtcaata gtataaacca 4741 ttggctcatt acattgtgtg ctctgtctga ggtcacgggt ctggcacccg atgttattca 4801 gtcacagtca tatttctctt tctatgggga cgatgaaatc gtgtccacag acattgattt 4861 tgacccggtc cggctcaccc aggttcttag ggagtatggg ctgcgtccaa ctcgtccaga 4921 caaaagtgag ggccccataa ttttgaggag aagtgtagat ggcttggtgt tccttaggcg 4981 taccatctcc aaagacgcag ctggctacca aggccggttg gataggaatt ccatagaaag 5041 acaactgtgg tggacccgtg gccccaatca tgatgatcca aatgagacac ttatccctca 5101 cccccaaaga aaggtccagc ttatatcact gttaggagag gcatcacttc atggggaaaa 5161 gttttacaga aagatttcag gtagagtcat ccaagagatc aaaacaggtg gattggaaat 5221 gtatgtgcca ggctggcagg ccatgttccg ctggatgcgt tttcatgacc ttggactttg 5281 gacaggagat cgcgatctcc tgcccgaatt cgtaaatgat gatggcgtct aaggacgccc 5341 caacatcgcc tgatggcgcc agtggcgctg gccagctagt gccggaggtt aatacagctg 5401 accaaatttc aatggatcct gttgcgggtg cttccactgc agttgcaacc gctggacaag 5461 ttaatatgat tgatccatgg atattcaata attttgtcca ggcccctcag ggtgaattta 5521 ctatttcccc aaataatacc cccggtgata ttttgtttga tttacaattg ggcccccatt 5581 tgaatccctt cttagctcat ttatcacaga tgtataatgg gtgggtcggc aatatgcggg 5641 tccgcatatt gctggcaggc aatgctttta cagctggcaa gataatcata tgttgtgtcc 5701 cccccggttt tgatgctagg atacttacta ttgctcaagc tactctattt cctcatatga 5761 ttgctgatgt taggactctt gaaccggtag agttacctct cgaggacgtg cgtaatgtcc 5821 tctaccacaa cagcagccag ccacagccaa ccatgcgtct ggtggctatg ctatacaccc 5881 cactgcgcac aggcggtggg tctggaggca ctgatgcttt tgtggttgct gggagagtgc 5941 tgacatgtcc tgcaccagac ttcagttttc tattccttgt tcctccctct gtagagcaaa 6001 agactagggt cttcagtgtg cccaatatac cactcaagga tctctcaaac tctcgagtgc 6061 caaccttgat acaaggtatg tttgtttctc ctgatgttaa tcaatcagtg caattccaaa 6121 atgggcggtg ccaaattgat ggccagttac aaggtactac ccctgtgtcc ctcagccaat 6181 tatgtaagat cagaggtaag acttccagca atgccagagt actcaacctt agtgaggttg 6241 atgggacacc ttttgtgccc cttgagtccc ctgcacctgt aggtttccca gatttaggcg 6301 ggtgtgattg gcatgtcggc tttacttttg aggcacgaga ccaggaccct tcccagaacg 6361 tgacctttgc aactaatgat tctagctttg tgccatatct tggcagtatc tcaccccata 6421 atggtgatgg gtttcatagt ggtgatatta taggtagttt agattggatt tcagctccat 6481 cggatggttc cacacttgac gtgtggtcca taccaaaata tggatcatct ctcccagatg 6541 tcactcatct ggcccctgca gtttttcccc ctggttttgg tgaggtcatc ctctactttc 6601 actccaaatt tcctggttct ggccctactg ataaacttag ggtcccatgt ctgataccac 6661 aagagttcat aacacacttc tgcaatgagc aagcacccat agcgggggag gctgccctcc 6721 ttcactatgt ggaccctgac acaggtagga acttggggga attcaagctt tatccagatg 6781 gctttatgac atgtgtgcct aacagcatca gcagtggccc ccagactctg ccaactaatg 6841 gtgtgtttgt gtttgtgtcc tgggtgtcca gattttacca acttaagcct gtgggaacgg 6901 cctcaatggc caggaggctt ggtcttcggc gcatataatg gctcaagcca tcataggtgc 6961 catagcagct tctgctgctg gaagtatact cggtgctggc atacaagctg gtgctgaggc 7021 tggactccaa gcccaacggt atcaacagga tcttcaatta caacagaata ctttccagca 7081 tgatagggaa atgatagggt accaagtcca agccagcaat gccctattgg ccaagaatct 7141 caacactagg tatactctac tgcaggcagg gggtttatct agtgcggatg cagctagggc 7201 tgttgcgggt gctcctgtta ctcgcatagt ggactggaac gggacccgtg tggcagcccc 7261 cacatcgagc gctactacac taaaatctgg tgggtttatg cctgtcccta tacccttaac 7321 tcaaaagtct aaacaactta taatgactgg gcaagataat cctaactatg ctgcttcctc 7381 tatttctaga actgcctcat gggtgcaatc ccagaattct ttgagatcta tgcccccctt 7441 tcataatgat gctctccgga ctgtgtgggt cacgccaccc ggttcttctt ctacatcttc 7501 tgtgcagtct agctattatg gtgtctttaa tacagataga ttacccctct tcgcaaatag 7561 gaggtagggt ttttg //