Typing tool
|
Complete norovirus genomes
MW305486 | GI.7 | ||
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GI.P7 |
ORF1: 1..5061 ORF2: 5045..6661 ORF3: 6661..7308LOCUS MW305486 7322 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate PNV013852 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305486 VERSION MW305486.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7322) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7322) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7322 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="PNV013852" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Peru" /collection_date="28-Jan-2009" /note="genotype: GI.7[GI.P7]" gene <1..5061 /gene="ORF1" CDS <1..5061 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QPJ58794.1" /translation="EEKKEILDNNERLFDAGGVTPSTVPSTFERCETSERVDGCHPVK WSESAGVDLGVDSLTTVTGPVWNMCPLPPIDSRNNGPASEPRIGDMIEFYEGHIFHYA IYLGQGKTIGVHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLKELENEPWP YASITNNCYEFCCRVMSLDDTWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRD AILSAINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPP DISNFIASLLPDFHLQGPEDLARDLVPLILGGVGLAIGFTRDKITKVMKSAVDGLRSA TQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKT YMNILDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVI MMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGM SKITEDCNKLQAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPV CRRVDFLVYCTAPEIEQTRRAHPGDTNAIKNLFKPDFSHLKMEIAPQGGFDNQGNTPF GKGAMKSTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLS MAALGKKLRSVNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSVTEKQAAANL QQQAISSVTLALSRLRAARALAYASCLQSAVTTILQMAGSAVVISRAVKRMFGTHTNQ PALEGKPREHNCRVHRAEREGRGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEG KNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEE LAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDW TPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPD AKEIFGEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGE LLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDW VVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTK FWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEA AVETVTNVLEQTMDTPVPWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNAFVRELGEQ AAHANNMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGP FCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKYRYHFDADYTAWDSTQNREIMLESF NIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYT LCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKS EGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPH QQRKIQLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLS MWTGDRNLLPDYVNDDGV" mat_peptide <1..876 /gene="ORF1" /product="p48" mat_peptide 877..1965 /gene="ORF1" /product="NTPase" mat_peptide 1966..2565 /gene="ORF1" /product="p22" mat_peptide 2566..2985 /gene="ORF1" /product="VPg" mat_peptide 2986..3528 /gene="ORF1" /product="Pro" mat_peptide 3529..5058 /gene="ORF1" /product="RdRp" gene 5045..6661 /gene="ORF2" CDS 5045..6661 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58795.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAAA TAGQVNMIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEV PLDDVRNVLFHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ LLGTTPVSANQVARIRGKVFSTNSGTGLNLTEIDGTPYHAFESPAPLGFPDIGDCDWH VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFSSEQHPSGDQLGTLTWISPLNNAS RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF VSSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV FIFSSWVSRYYQLKPVGTAGPVRRLGVRRV" gene 6661..7308 /gene="ORF3" CDS 6661..7308 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58796.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPMTKLVDWNG VRIAAPASTATTLRSGNFMSIPVTPKKEPQKLSARSVGLSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK" ORIGIN 1 gaagaaaaga aggagatcct ggacaacaac gagcgcctct ttgacgctgg cggtgtgact 61 ccttcgacag taccaagcac ttttgagaga tgtgaaacat ctgagcgagt cgacggctgc 121 caccctgtca aatggagcga gtctgcggga gtggatttag gcgtggattc cctaaccact 181 gtcacaggtc cagtgtggaa catgtgcccc cttccaccga ttgattcacg taacaatggc 241 cctgcaagtg agccacgcat tggagacatg atagaatttt atgaagggca tatattccat 301 tacgccatat atcttggtca agggaagacc ataggagtcc actcccctca ggcagctttc 361 tccatagctc gtataaccat acaccctatg gcagcatggt ggcgtgtctg ctatgaacca 421 acagatcagc aacgcctcag ctatgaccaa ttaaaggaac ttgagaatga accgtggccc 481 tacgcatcca taacgaataa ttgttatgag ttctgttgcc gtgtcatgtc cctggacgac 541 acctggttac aacgaaagtt ggtgacatcc ggtaggttta atcaccccac ccaggagtgg 601 tccaaggaaa cacctgattt ccatcaagat tcaaaattgg aaatagtgag agatgcaata 661 ctatccgcca taaacggctt ggtctctcaa ccttttaaga atatcctctc aaaaattaag 721 ccactgaatt tgttgtcttt gctatcaaat tgtgactgga ctttcatggg ggtcgtcgag 781 ctagtggtgc tactggctga actgtttgac atattctgga ccccacctga tatctccaac 841 ttcatagcat ctctcctgcc tgactttcac ctgcaagggc cagaggattt ggcaagagac 901 ctggtcccat taatattggg gggtgttggc ctggctattg gtttcactag agacaaaatc 961 acaaaggtca tgaagagtgc cgttgatggc ctgcgctcag ccacgcagct tggacaatat 1021 ggccttgagg tgttctcgat cataaagaag tatttctttg gtggagacca aactgagaaa 1081 accctcaagg gcatagagaa tgcagtcata gatatggagg tcctgtcgag caccaatgtc 1141 acacaactgg tgcgcgacaa gaagttggcc aaaacataca tgaatatcct ggacaatgag 1201 gaggaaaagg caaggaaact ttcagtgcgc agtgcagatc cacatgttgt gacaacagtc 1261 aacaacctca tttcgcgcat atccatggcg cgatcagctc tcgccaaagc tcaggctgag 1321 atgactaatc gggcacgccc cgtggtcata atgatgtgtg gaccaccagg tataggaaaa 1381 accaaagctg ctgaacacct ggccaaccgc ctggctggtg agataagacc agggggaaaa 1441 gtgggtttag tgcctagaga atccattgac cattgggatg gctaccatgg ggaagaagtc 1501 ctgctgtggg atgactacgg catgtccaag ataacagagg attgcaataa actacaagcc 1561 atagctgaca ctgctccact cacactcaac tgtgacagga tagagaacaa gggtatgcaa 1621 tttgtgtcag atgcaataat aataacaaca aatgcccccg ggccagcccc cgtcgacttt 1681 gttaatcttg gtccagtatg tcgacgtgta gacttcttgg tgtactgcac cgcccccgaa 1741 attgaacaga ccaggagagc ccaccctggg gacaccaatg ctatcaagaa tttgttcaaa 1801 ccagactttt cccatttaaa aatggagata gcaccacaag gggggtttga caaccaaggt 1861 aacaccccct ttgggaaggg tgctatgaaa tcgaccacac tcaataggct actcatacag 1921 gcagtcgctt tgacaatgga aagacaagat gagttccaga tgcagggggc agtgtataac 1981 tttgatgagg atcgggtcac agctttcact agcctggccc gggccaacgg actaggactt 2041 ttgagcatgg ccgcactcgg taaaaagttg cggagcgtta acaatatgga aggactccgc 2101 aacgccctca aagggtacaa gatcactgaa tgtgacattg tgtggaacaa caggacttac 2161 accattaagg gagatggatc aaatgtgagc gtcacagaaa agcaggcagc tgccaatctt 2221 cagcaacaag ccatcagctc agttactctg gcactttcta ggttacgcgc cgcacgagcg 2281 ttggcgtatg catcatgtct ccagagcgca gtaaccacca tcttgcaaat ggctgggtct 2341 gcagtggtga tcagcagggc agtcaaacgc atgtttggga cccatactaa ccagccagca 2401 ctggagggca aacccaggga acacaactgc agggtccacc gtgccgaaag ggaaggtcgt 2461 ggccctattg gtcatgatgg catcatagaa cggtacggtc tgtgtgagac tgaccaagaa 2521 gaagaagaaa agatcgagat ggaagtgcca actgcagaca aagaaggcaa gaacaaaggc 2581 aagaacaaga aggggcgagg taggaaaaat aactacaacg ccttctctag gcgaggccta 2641 agtgatgagg agtatgaaga atacaagaag gttagagaag agaagggtgg taactacagc 2701 atccaagaat acctcgagga ccgccaacga tatgaagaag agttggctga ggtccaagcg 2761 ggtggagatg gcgggatcgg tgaaacagag gcagagatcc gccatcgtgt tttctacaaa 2821 tccaagagtg gcatgcgaaa acaacgtcaa gaggagcgcc gacagcttgg attagtcaca 2881 ggcactgaaa tcagaaagcg caagcccata gattggacac cacctaagaa tgactggtca 2941 gaagacacca ggcaggtcaa ctatgatgag catatcagct ttgaagcccc accttctatt 3001 tggagtagag tggtcaaatt tggcagtgga tggggctttt gggtgagttc aacagttttt 3061 atcacaacca cacacgtcat accaccagat gctaaagaaa tttttgggga aaaactttca 3121 gatatagcaa tacacagagt tggggagttc acacaattta gattctctaa gaaaatgaga 3181 cctgacctca gtggtatggt ccttgaggag ggttgcccgg agggaacggt gtgcactata 3241 atggtgaaga gagattcagg tgaactgcta cctctagctg tgcgcatggg agctgttgca 3301 tccatgaaga tacaaggtaa gctcatgcat ggtcaatctg gtatgttgct aaccggtgca 3361 aatgcaaagg gaatggacct tggcaccatc cctggtgact gtggagctcc atatgtgcat 3421 aagaggggaa atgactgggt agtgtgtgga gtgcacgcgg ccgcaaccaa gtcgggcaac 3481 accgtagtgt gtgcaataca gtcaggtgaa ggtgaagcta cccttgaagg gggcggacaa 3541 aacaaggggc attatgcagg ccacccaatt ttaaggtatg gcaatgggcc ctctctctcc 3601 acaaaaacca aattctggaa atcgaccccc caaccactcc cgcctggaac ctatgaacca 3661 gcttacctag gtggacgtga ccccagggta gacggtggtc catctcttca acaagtccta 3721 cgtgaccaac tcaagccttt tgctgagccc cgtggtagac tgccagagcc gagcttgctc 3781 gaagcagctg tggagactgt tacaaatgtt ttagaacaaa ccatggacac acctgtgcct 3841 tggagttaca gtgacgcctg tatgtctctt gacaagacca ccagctcagg ttatccgcac 3901 cataagcgca agaatgatga ttggaatggc aatgcgtttg tgcgtgaact tggggaacag 3961 gcagctcatg ccaataatat gtacgaattg ggcaagtcag ttaaaccagt ttacacagca 4021 gcacttaaag atgaattggt aaaacctgaa aaagtgtaca caaaaataaa aaagagactg 4081 ctttggggtg cggaccttgg tacagtcatt cgggccgctc gagccttcgg cccattttgt 4141 gaggcgataa agccacatgt gataaaattg ccgatcaagg ttggcatgaa tgcaattgaa 4201 gatggccccc tcatatatgc tgaacatgca aagtatagat atcattttga tgcagattac 4261 acagcctggg actcaactca gaatagagaa atcatgctag aatctttcaa cattatgtgt 4321 aagctcacag ccaatccatc actggccgct gttgtggcac aggacctact gtccccatca 4381 gaaatggatg tgggggatta tgtgattagt gttaaggatg gcctcccctc agggttccca 4441 tgcacctcac aagtgaacag cataaaccac tggatttaca ctctgtgtgc cctgtcagag 4501 gtcacaggcc tggcccctga tgtcctgcaa tcccagtctt acttttcctt ctacggggat 4561 gatgagatag tatcaactga tgtggaattt gacccaataa agctcaccca agtgctcaga 4621 gaatatggtt tgaagcccac ccgacctgac aaatcagaag ggcccattat agtgaaacaa 4681 cagatagatg ggctggtctt tctcagacgt accatatcaa aagacgctgc cggttaccag 4741 gggcgtttag atcgcaactc cattgaaagg caactgtggt ggactcgggg accaaatcat 4801 gatgacccct ttgagactct gataccccat caacaaagga aaattcaact gatatccctg 4861 cttggtgagg ctgcactcca tggagagaaa ttttacagga agattgctaa tagggtgata 4921 caggaagtta aggagggtgg gcttgagctc tacataccag gttggcaggc catgtttcgc 4981 tggatgcgat ttcatgactt gagcatgtgg acaggagatc gcaatctact gcctgattat 5041 gtaaatgatg atggcgtcta aggacgcccc ctcaaacatg gatggcacca gtggtgccgg 5101 tcagctggtt ccagaggtta atgcagctga acctctaccc cttgaaccgg tggtgggcgc 5161 cgcaaccgcg gcggccactg ctggacaggt taatatgata gacccctgga ttatgaataa 5221 ttttgtccaa gcccctgaag gcgaatttac tatttcaccc aacaacaccc ctggagatat 5281 tttatttgac ttgcgtctgg gaccacacct taaccccttt ctcctgcatt tgtcccagat 5341 gtataatggt tgggttggga atatgagagt tagggtcatg cttgcaggga acgcgttctc 5401 cgctggtaag atcataattt gttgtgtccc acctggcttt gaatcccaga acatatcaat 5461 tggacaagcc acaatgttcc cccatgtcat agctgatgtg agagtcctgg agcccataga 5521 ggtccccctt gatgatgtgc gcaatgtcct gttccacaca aatgagaacc gcccaaccat 5581 gcgactgctc tgtatgttat acacacctct ccgtgctgga ggagcttcat caggcacaga 5641 cccttttgtc attgctggcc gtgtgttaac ttgtcccgct cctgatttca attttctgtt 5701 tcttgtgccc cccagtgtag aacagaaaac caggcaattg actataccca atataccctt 5761 gaacaatttg gctaactcca gagtgcctgc aatgataaac aagatgacag tctctgctga 5821 tcagaatcag gtggtccagt ttcaaaatgg ccgttgcaca cttgaaggac aactcttagg 5881 tacaacccct gtttcagcca accaagttgc ccgcatacgt ggcaaagtct tctccaccaa 5941 ctccgggacg gggcttaatt taactgaaat agatggaacc ccctaccatg catttgagag 6001 cccggccccc ctcggttttc ctgacatagg tgattgtgat tggcacgtgt atgcctttaa 6061 ggtaaatcaa aatacagggg atcccatgta cagattggat ataacacaag gaaactcatt 6121 tgcaccgcat cttggctcca ttgagtttag ttctgaacag cacccatcgg gggaccaact 6181 aggcacactt acttggatct cccctctcaa caatgcttct agggttgacc cctggaaaat 6241 cccatcatat ggttcaacat tgactgagtc caccaacttg gcaccaccca tctttccacc 6301 aggttttggt gaggctatag tttattttat gtcagatttt cctattgtgt caggtaatac 6361 tgcccaaatc ccctgtaccc tgccccaaga atttgtttca tcctttgtgg aacaacaggc 6421 accgatccga ggtgaagctg ctctactgca ttatgtggac ccagataccc atcgcaatct 6481 gggagaattc aaattgtacc ctgatgggtt catcacttgt gtgccaaaca cgggtggcgg 6541 cccccaaaat ctcccatcga atggtgtctt tatcttctct tcttgggttt ctagatatta 6601 tcaattaaag cctgtgggaa cagccggtcc ggttaggagg cttggtgtga gaagggtata 6661 atggcccaag ccatcatagg agctattgcc gccaccgctg ctggcagcgc agtgggggca 6721 ggtatccaag ctggaactga ggcagccttg caataccaaa ggtttcagca agatctcacc 6781 ctgcaggaga attcttttaa gcatgatgaa aggatgttgg gtctacaaat tgaggggtct 6841 aatgctttgc tacaaaagaa tctttctacc cgctataatc tcttagttgg tgcaggcctt 6901 tcctcagctg atgctgcaag gtccattgct ggggccccaa tgacaaaact cgtggactgg 6961 aatggggtga gaatcgctgc ccccgcatcc actgccacca ccctccgttc tggcaacttc 7021 atgagcatac cagtcacacc caaaaaggag ccccaaaaac tgtcagcacg ttctgtaggc 7081 ctctccaatc ccaattatga ttcatctact atgatttcta ggacaactca atgggtggag 7141 tcgcaaaatt caatcaggaa tttgtcacct ttccatagct cggctctgag gactacttgg 7201 gtaactcctc ctggttctac ttctacttca actttttcta ctgtttcttc ggcgccacgg 7261 tacttcaaca ccgagcgtct tcctttgttc gcaaacaata ggaaatagtt tttgtaatat 7321 aa //