Typing tool
|
Complete norovirus genomes
MW305483 | GI.7 | ||
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GI.P7 |
ORF1: 1..5062 ORF2: 5046..6662 ORF3: 6662..7309LOCUS MW305483 7323 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate PNV027757 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305483 VERSION MW305483.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7323) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7323) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7323 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="PNV027757" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Peru" /collection_date="12-Jul-2010" /note="genotype: GI.7[GI.P7]" gene <1..5062 /gene="ORF1" CDS <1..5062 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58785.1" /translation="EEKKEILDNNERLFDAGGVTPSTVPSTFERCETSERVDGCHPVK WSESAGVDLGVDSLITVTGPVWNMCPLPPIDSRNNGPAGEPRIGDMIEFYEGHIFHYA IYLGQGKTIGVHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLKELENEPWP YASITNNCYEFCCRVMSLDDTWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRD AILSAINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPP DISNFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSA TQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKT YMNILDNEEERARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVI MMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGM SKITEDCNKLQAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPV CRRVDFLVYCTAPEIEQTRRAHPGDTNAIKNLFKPDFSHLKMEIAPQGGFDNQGNTPF GKGAMKSTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTNLARANGLGLLS MAALGKKLRSVNNMEGLRNALKGYKITECDIVWNNRTYTVKGDGSNVSVTEKQAAATL QQQAISSVTLALSRLRAARALAYASCLQSAVTTILQMAGSAVVISRAVKRMFGTHTNQ PALEGKPREHNCRVHRAEREGRGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEG KNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEE LAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDW TPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVTPPD AKEIFGEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMILEEGCPEGTVCTIMVKRDSGE LLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDW VVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTK FWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEA AVETVTNVLEQTMDTPVPWSYSDACMSLDKTTSSGYPHHKRKNDDWNGNAFVRELGEQ AAHANNMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGP FCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKYRYHFDADYTAWDSTQNREIMLESF NIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYT LCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKS EGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHNDPFETLIPH QQRKIQLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLS MWTGDRNLLPDYVNDDGV" mat_peptide <1..877 /gene="ORF1" /product="p48" mat_peptide 878..1966 /gene="ORF1" /product="NTPase" mat_peptide 1967..2566 /gene="ORF1" /product="p22" mat_peptide 2567..2986 /gene="ORF1" /product="VPg" mat_peptide 2987..3529 /gene="ORF1" /product="Pro" mat_peptide 3530..5059 /gene="ORF1" /product="RdRp" gene 5046..6662 /gene="ORF2" CDS 5046..6662 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58786.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAAA TAGQVNMIDPWIMNNFVQAPEGEFTISPNNTPGDVLFDLRLGPHLNPFLLHLSQMYNG WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLFHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ LLGTTPVSANQVARIRGKVFSTNSGTGLNLTEIDGTPYHAFESPAPLGFPDIGDCDWH VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFSSEQHPSGDQLGTLTWISPLNNAS RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF VSSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV FIFSSWVSRYYQLKPVGTTGPVRRLGVRRV" gene 6662..7309 /gene="ORF3" CDS 6662..7309 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58787.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDEKMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPMTKLVDWNG VRIAAPASTATTLRSGNFMSIPVTPKKEPQKLSARSVGLSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSIASSAPRYFNTERLPLFANNRK" ORIGIN 1 ggaagaaaag aaggagatcc tggacaacaa cgagcgcctc tttgacgctg gcggtgtgac 61 tccttcgaca gtaccaagca cttttgagag atgtgaaaca tctgagcgag tcgacggctg 121 ccaccctgtc aaatggagcg agtctgcggg agtggattta ggcgtggatt ctctaatcac 181 tgtcacaggt ccagtgtgga acatgtgccc ccttccaccg attgattcac gtaacaatgg 241 ccctgcaggt gagccacgca ttggagacat gatagaattt tatgaagggc atatattcca 301 ttacgccata tatcttggtc aagggaagac cataggagtc cactcccctc aggcagcttt 361 ctccatagct cgtataacca tacaccctat ggcagcatgg tggcgtgtct gctatgaacc 421 aacagatcag caacgcctca gctatgacca attaaaggaa cttgagaatg aaccgtggcc 481 ctacgcatcc ataacgaata attgttatga gttctgctgc cgtgtcatgt ccctggacga 541 cacctggtta caacgaaagt tggtgacatc cggtaggttt aatcacccca cccaggagtg 601 gtccaaggaa acacctgatt tccatcaaga ttcaaaattg gaaatagtga gagacgcaat 661 actatccgcc ataaacggct tggtctctca accttttaag aatatcctct caaaaattaa 721 gccactgaat ctgttgtctt tgctatcaaa ttgtgactgg actttcatgg gggtcgtcga 781 gctagtggtg ctactggctg aactgtttga catattctgg accccacctg atatctccaa 841 cttcatagca tctctcctgc ctgactttca cctgcaaggg ccagaggatt tggcgagaga 901 cctggtccca ttaatattgg ggggtattgg cctggctatt ggcttcacca gagacaaaat 961 cacaaaggtc atgaagagtg ccgttgatgg cctgcgctca gccacgcagc ttggacaata 1021 tggccttgag gtgttctcga tcataaagaa gtatttcttt ggtggggacc aaactgagaa 1081 aaccctcaag ggcatagaga atgcagtcat agatatggaa gtcctgtcga gtaccaatgt 1141 cacacaactg gtgcgcgaca agaagttggc caaaacatac atgaatatcc tggacaatga 1201 ggaggaaagg gcaaggaaac tttcagtgcg cagtgcagat ccacatgttg tgacaacagt 1261 caacaacctc atttcgcgca tatctatggc gcgatcagct ctcgccaaag ctcaggctga 1321 gatgactaat cgggcacgcc ccgtggtcat aatgatgtgt ggaccaccag gtataggaaa 1381 aaccaaagct gctgaacacc tggccaatcg cctggctggt gagataagac cagggggaaa 1441 agtgggttta gtgcctagag aatccattga ccactgggac ggctaccatg gggaagaagt 1501 cctgttatgg gatgactacg gcatgtccaa gataacagag gattgcaata aactacaagc 1561 catagctgac actgctccac tcacactcaa ttgtgacagg atagagaaca agggtatgca 1621 atttgtgtca gatgcaataa taataacaac aaatgccccc gggccagccc ccgtcgactt 1681 tgttaacctt ggtccagtgt gtcgacgcgt agacttcttg gtgtattgca ctgcccccga 1741 aattgaacaa accaggagag cccaccctgg ggacaccaat gctatcaaga atttgttcaa 1801 accagatttt tcccatttaa aaatggagat agcaccacaa ggggggtttg acaatcaagg 1861 taacaccccc tttgggaagg gtgctatgaa atcgaccaca ctcaataggc tactcataca 1921 ggcagtcgct ttgacaatgg aaagacaaga tgagttccag atgcaggggg cagtgtataa 1981 ctttgatgag gatcgggtca cagccttcac taacctggcc cgggccaacg gactaggact 2041 tttgagcatg gccgcactcg gtaaaaagtt gcggagcgtc aacaatatgg aaggactccg 2101 caacgccctc aaagggtaca agatcactga atgtgacatt gtgtggaaca acaggactta 2161 caccgttaag ggagatggat caaatgtgag cgtcacagaa aagcaggcag ctgccactct 2221 tcagcaacaa gccatcagct ctgttactct ggcactttct aggttacgcg ccgcacgagc 2281 gttggcgtat gcatcatgtc tccagagcgc agtaaccacc atcttgcaaa tggctgggtc 2341 tgcagtggtg atcagcaggg cagtcaaacg catgtttggg acccacacca accagccagc 2401 actggagggc aaacccaggg aacacaactg cagggtccac cgtgccgaaa gggaaggtcg 2461 tggccctatt ggtcatgatg gcatcataga acggtacggt ctgtgtgaga ctgatcaaga 2521 agaagaagaa aagatcgaga tggaagtgcc aactgcagac aaggaaggca agaacaaagg 2581 caagaacaag aaggggcgag gtaggaaaaa taactacaac gccttctcta ggcgaggcct 2641 aagtgatgag gagtatgaag aatacaagaa ggttagagaa gagaagggtg gtaactacag 2701 catccaagaa tacctcgagg accgccaacg atatgaagaa gagttggctg aggtccaagc 2761 gggtggagat ggcgggatcg gtgaaacaga ggcagagatc cgccatcgtg ttttctataa 2821 atccaagagt ggcatgcgaa aacaacgtca agaggagcgc cgacagcttg gattagtcac 2881 aggcactgaa atcagaaagc gcaagcccat agattggaca ccacctaaga atgactggtc 2941 agaagacacc aggcaggtca actatgatga gcacatcagc ttcgaagccc caccttctat 3001 ttggagtaga gtggtcaaat ttggcagtgg atggggcttt tgggtgagtt caacagtttt 3061 tatcacaacc acacacgtca caccaccaga tgctaaagaa atctttgggg aaaaactttc 3121 agatatagca atacacagag ttggggagtt cacacaattt agattctcta agaaaatgag 3181 acctgacctc agtggcatga tccttgagga gggttgcccg gagggaacgg tgtgcactat 3241 aatggtgaag agagattcag gtgaactgtt acctctagct gtgcgcatgg gagctgttgc 3301 atccatgaag atacaaggta agctcatgca tggtcaatct ggtatgttgc taaccggtgc 3361 aaatgcaaag ggaatggacc ttggcaccat ccctggtgac tgtggagctc catatgtgca 3421 taagagggga aatgactggg tagtgtgtgg agtgcacgca gccgcaacca agtcgggcaa 3481 caccgtggtg tgtgcaatac agtcaggtga aggtgaagct acccttgaag ggggcggaca 3541 aaacaaggga cattatgcag gccacccaat tttaaggtat ggcaatgggc cctctctctc 3601 cacaaaaacc aaattctgga aatcgacccc ccaaccactc ccgcctggaa cctatgaacc 3661 agcttaccta ggtggacgtg accccagggt agacggtggt ccatctcttc aacaagttct 3721 acgtgatcaa ctcaagcctt ttgctgagcc ccgtggtaga ctgccagaac cgagcttgct 3781 cgaagcagct gtggagactg ttacaaatgt tttagaacaa accatggaca cacctgtgcc 3841 ttggagttac agtgacgcct gtatgtctct tgacaagacc accagctcag gttatccgca 3901 ccataagcgc aagaatgatg attggaatgg caatgcgttt gtgcgtgaac ttggggaaca 3961 agcagctcat gccaataata tgtacgaatt gggcaagtca gttaaaccag tttacacagc 4021 agcacttaaa gatgaactgg taaaacctga aaaagtgtac acaaaaataa aaaagagact 4081 gctttggggt gcggaccttg gtacagtcat tcgggccgct cgagccttcg gcccattttg 4141 tgaggcgata aagccacatg tgataaaatt gccaatcaag gttggcatga atgcaattga 4201 agatggcccc ctcatatatg ctgaacatgc aaagtataga tatcattttg atgcagatta 4261 cacagcttgg gactcaactc agaatagaga aatcatgcta gaatctttca acattatgtg 4321 taagctcaca gccaatccat cactggccgc tgttgtggca caggacctac tgtccccatc 4381 agaaatggat gtgggggatt atgtgattag tgttaaggat ggcctcccct cagggttccc 4441 atgcacctca caagtgaaca gcataaacca ctggatttac actctgtgtg ccctgtcaga 4501 ggtcacaggc ttggcccctg atgtcctgca atcccagtct tacttttcct tttacgggga 4561 tgatgagata gtgtcaactg atgtggaatt tgacccaata aagctcaccc aagtgctcag 4621 agaatatggt ttgaagccca cccgacctga caaatcagaa gggcccatta tagtgaaaca 4681 acagatagat gggctggtct ttctcagacg tactatatca aaagatgctg ctggttacca 4741 ggggcgttta gaccgcaact ccattgaaag gcagttgtgg tggactcggg gaccaaatca 4801 taatgacccc tttgagactc tgatacccca tcaacaaagg aaaattcaac tgatatccct 4861 gcttggtgag gctgcactcc atggagagaa attttacagg aagattgcta atagggtgat 4921 acaggaagtt aaggagggtg ggcttgagct ctacatacca ggttggcagg ccatgttccg 4981 ctggatgcga tttcatgact tgagcatgtg gacaggagat cgcaatctac tgcctgatta 5041 tgtaaatgat gatggcgtct aaggacgccc cctcaaacat ggatggcacc agtggtgccg 5101 gtcagctggt tccagaggtt aatgcagctg aacctctacc ccttgaaccg gtggtgggcg 5161 ccgcaaccgc ggcggccact gctggacagg ttaatatgat agacccctgg attatgaata 5221 attttgtcca agcccctgaa ggcgaattta ctatttcacc caacaatacc cctggagatg 5281 ttttatttga tttgcgtctg ggaccacacc ttaacccctt tctcctgcat ttgtctcaga 5341 tgtataatgg ttgggttggg aacatgagag ttagggtcat gcttgcgggg aacgcgttct 5401 ccgctggtaa gatcataatt tgttgtgtcc cacctggctt tgaatcccag aacatatcaa 5461 ttggacaagc cacaatgttc ccccatgtca tagctgatgt gagagttctg gagcccatag 5521 agatccccct tgatgatgtg cgcaatgtcc tgttccacac aaatgagaac cgcccaacca 5581 tgcgactgct ctgtatgtta tacacacctc tccgtgctgg aggagcttca tcaggcacag 5641 atccttttgt cattgctggc cgtgtgttaa cttgtcccgc tcctgatttc aattttctgt 5701 ttcttgtgcc ccccagtgta gaacagaaaa ccaggcaatt gactataccc aatataccct 5761 tgaacaattt ggctaactcc agagtgcctg caatgataaa caagatgaca gtctctgctg 5821 accagaatca ggtggtccag tttcaaaatg gccgttgcac acttgaggga caactcttag 5881 gtacaacccc tgtttcagcc aaccaagttg cccgcatacg tggcaaagtc ttctccacca 5941 actccgggac ggggcttaat ttaactgaaa tagatggaac cccctaccat gcatttgaga 6001 gcccggcccc cctcggtttt cctgacatag gtgattgtga ttggcacgtg tatgccttta 6061 aggtaaatca aaatacaggg gatcccatgt acagattgga tataacacaa ggaaactcat 6121 ttgcaccgca tcttggctcc attgagttta gttctgaaca gcacccatcg ggggaccaac 6181 taggcacact tacttggatc tcccctctca acaacgcttc tagggttgac ccctggaaaa 6241 tcccatcata tggttcaaca ttgactgagt ccaccaactt ggcaccaccc atctttccac 6301 caggttttgg tgaggctata gtttatttta tgtcagattt tcctattgtg tcaggtaata 6361 ctgcccaaat cccctgcacc ctgccccaag aatttgtttc atcttttgtg gaacaacagg 6421 caccgatccg aggtgaagct gccctactgc attatgtgga cccagatacc catcgcaatc 6481 tgggagaatt caaattgtac cctgatgggt tcatcacttg tgtgccaaac acgggtggcg 6541 gcccccaaaa tctcccatcg aatggtgtct ttatcttctc ttcttgggtt tctagatatt 6601 atcaattaaa gcctgtggga acaaccggtc cggttaggag gcttggtgtg agaagggtat 6661 aatggcccaa gccatcatag gagctattgc cgccaccgct gctggcagcg cagtgggggc 6721 aggtatccaa gctggaactg aggcagcctt gcaataccaa aggtttcagc aagatctcac 6781 cctgcaggaa aattctttca agcatgatga aaagatgttg ggtctacaaa ttgaggggtc 6841 taatgctttg ctacaaaaga atctctctac ccgctataat cttttagttg gtgcaggtct 6901 ttcctcagct gatgctgcaa gatccattgc tggggcccca atgacaaagc tcgtggactg 6961 gaatggggtg agaatcgccg cccccgcgtc cactgccacc accctccgtt ctggcaactt 7021 catgagcata ccagtcacac ccaaaaagga gccccaaaaa ctgtcagcac gatctgtagg 7081 cctctccaat cctaattatg attcatctac tatgatttct aggacaactc aatgggtgga 7141 gtcgcaaaat tcaatcagga atttgtcacc tttccatagc tcggctctga ggactacttg 7201 ggtaactcct cctggttcta cttctacttc aactttttct attgcttctt cggcgccacg 7261 gtacttcaac accgagcgtc ttcctttgtt cgcaaacaat aggaaatagt ttttgtaata 7321 taa //