Typing tool
|
Complete norovirus genomes
MW305482 | GI.8 | ||
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GI.P8 |
ORF1: 1..5368 ORF2: 5352..6983 ORF3: 6983..7624LOCUS MW305482 7703 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate PNV009485 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305482 VERSION MW305482.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7703) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7703) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7703 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="PNV009485" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Peru" /collection_date="17-Aug-2008" /note="genotype: GI.8[GI.P8]" gene <1..5368 /gene="ORF1" CDS <1..5368 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58782.1" /translation="ADVSNNNANTNNENIGSRLMARIRGRIGPQRGETTTKIKDASMA LDLLRRSQTPSPARQESPPKDQRDRPPRTVSEVKRAMKWDVEPEHRESTARAWCDLSK EEKEEIMRNNEKLFDAGGVTPSTLPSTFERAETNNDVSDQQAVSWSANDGVNIGVSDL TTVHGPFWNMCPLPPLDARNNGPAKEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSP QAAFSIPRITIHPLVAWWRVCYVPNDRQRLTYDQLKELENEPWPYAAVTNNCYEFCCR VMALDDTWLQRRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPF KNILSKIKPLNVLNLLSNCDWTFMGVVELIVLMAELFDIFWTPPDISSFIASLLPDFH LQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSII KKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMNVLDNEEEKARK LSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAA EHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIA DTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPE IEQMRRAHPGDTNAIKDLYKKDFTHLKMELAPQGGFDSQGNTPFGKGVMKPTTLNRLL IQATALAMERQDEFQLQGATYNFDEDRVAAFTNLARANGLGLISMATLGKKLRGVKSM EGLRNALLGYKIEECDIVWNTRMYSIKSDGNTVTIKEKQAPTSPQHQAICTATLALSR LRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPMLEGKHKEHNCRV HRAEAAGHGPIGHDGVIERYGLCESEQEEESVQTVELPTASEEGKNKGKTKKGRGRKS NFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGE TEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTV NYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEVFGESISNVAI HRVGEFTQFRFPKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASM KIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGN TVVCAIQGGEGEATLEGGDRNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTY EPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNALEQVMD TPVAWSFSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAHANNMYELGKPM KPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPI KVGMNAIEDGPLIYVEHSKYKYHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAA VVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLSPDV IQSQSYFSFYGDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLV FLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEA ALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVN DDGV" mat_peptide <1..1183 /gene="ORF1" /product="p48" mat_peptide 1184..2272 /gene="ORF1" /product="NTPase" mat_peptide 2273..2872 /gene="ORF1" /product="p22" mat_peptide 2873..3292 /gene="ORF1" /product="VPg" mat_peptide 3293..3835 /gene="ORF1" /product="Pro" mat_peptide 3836..5365 /gene="ORF1" /product="RdRp" gene 5352..6983 /gene="ORF2" CDS 5352..6983 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58783.1" /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW VSNREGATLNLWAVPNYGSNLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS" gene 6983..7624 /gene="ORF3" CDS 6983..7624 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58784.1" /translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMVSRTSQWVESQ NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK" ORIGIN 1 tgctgatgtc agcaataaca atgctaacac caacaatgaa aatattgggt cccgccttat 61 ggcgaggatc cgtgggcgca taggtccaca acgtggtgaa acaactacaa agattaagga 121 tgccagtatg gcacttgacc tgctacgccg gtcacaaaca ccctccccag ctcgacaaga 181 gagtcccccc aaagatcaga gagatcgtcc tccacgaacc gtttcagagg ttaaaagggc 241 catgaagtgg gatgttgaac cagaacaccg ggaaagtaca gcaagagcct ggtgcgatct 301 ctcgaaggaa gaaaaagagg agataatgcg caacaatgag aagctatttg atgctggggg 361 agtcactcca tcaactctac ccagcacatt tgaaagggct gaaacaaaca atgatgttag 421 tgaccaacaa gctgtatcat ggtctgctaa tgatggagtg aatattggcg ttagtgatct 481 gaccactgtc catggaccat tttggaatat gtgccccctc ccaccattgg acgctcgcaa 541 caatggtcct gccaaagagc ccctcatagg ggatatgata gagttctatg aaggccacat 601 attccactac gccatttata tagggcaagg taagactatt ggggtccact cgccacaggc 661 tgctttttcc atacccagaa taaccatcca ccctttggtg gcttggtggc gcgtgtgtta 721 tgttcccaat gaccgtcaac gcctcaccta tgatcaactt aaagaattgg agaatgaacc 781 atggccatat gccgctgtta ctaacaactg ctatgaattt tgttgtagag tgatggcgct 841 agatgacact tggctccaaa ggagactggt tagcactgga aagttcaacc accccacaca 901 ggattggtca caagacaccc cagacttcca ccaagattcg aagttagaaa tggtgagaga 961 tgctgtactg tcagccatta acggtcttgt gtcacaaccc ttcaaaaaca ttctttcaaa 1021 gatcaagcca ttaaatgtgc tcaatctttt atcaaactgt gattggacct tcatgggggt 1081 tgtagagctg atcgtcctca tggcagaatt gttcgatata ttctggactc caccagatat 1141 ctcgagcttt attgcatcgc tattgccaga ttttcatctt caaggcccag aggacttagc 1201 tagggacctg gtcccactca tactaggtgg cattggccta gcaattggct ttacaagaga 1261 caagataaca aaagtgatga agagtgccgt tgatggtctg cggtcagcga cacagcttgg 1321 acagtatgga ttagaaatat tctcaatcat aaagaaatac ttctttggag gtgaccagac 1381 agaaaagacc ctccggggca tcgaggatgc agtgatagac atggaggtat tgtccagcac 1441 caacgtaaca caattggtca aggacaagaa gttggccaga acttacatga atgtactgga 1501 taatgaggaa gaaaaggcta gaaaactctc agtccgcagt gctgacccac acatagtaac 1561 ctcagtcaac aacttgatat ctcgcatttc aatggcaaga tcagccctgg ccaaggccca 1621 agcagaaatg acatcccgcc cacgcccagt ggtcataatg atgtgtggtc cccctggcat 1681 tgggaaaacg aaagctgctg agcacctggc gggccgattg gctgccgaaa taagaccagg 1741 gggaaaagtc ggtcttgtgc cgcgagagtc catagaccac tgggacggtt atcatggtga 1801 ggacgttctg ctctgggatg attatggtat gtcaaaaata acagaagatt gcaataaatt 1861 gcaagccata gctgacactg caccactgtc actcaattgc gacaggatag aaaacaaagg 1921 catgcagttc tcctctgatg caataattat taccaccaat gctcctggtc cagctccagt 1981 tgactttgtt aatctgggtc ctgtgtgcag gcgggtggac tttttagtat actgctctgc 2041 tccagaaatt gaacaaatgc ggagggccca cccaggtgac actaatgcta ttaaggacct 2101 gtacaagaaa gatttcacgc acctcaagat ggaattagct ccacaaggtg gctttgatag 2161 ccagggcaac acgccgtttg gaaaaggtgt tatgaagccc acaaccctca ataggctatt 2221 gatccaggcc acagcattag ccatggagcg gcaagatgag tttcagcttc aaggggccac 2281 ctacaatttt gacgaggata gggtggccgc tttcaccaac ttagcacgcg ccaatggcct 2341 ggggctcata agcatggcaa cattgggtaa gaaattgagg ggtgtcaaat caatggaggg 2401 gctgcgcaat gcactattgg gctataaaat agaagaatgt gacatagtct ggaacaccag 2461 aatgtactct attaagagtg acgggaatac cgtcacaatt aaagagaagc aggcaccaac 2521 ctcgccccaa caccaggcta tctgcacggc caccctcgcg ctctcccggt tgcgggctgc 2581 tagggccctt gcatatgctt cttgcttaca gagtgctgtg ctgtcaatac ttcaggtggc 2641 tggatccgct gtggtggtaa gcagggccgt taagcgtatg tttggtacgc gcaccgaaca 2701 gcctatgcta gaaggtaagc acaaggaaca taattgcaga gtgcaccgag ctgaggcagc 2761 cggccatggc cccattggcc acgatggggt cattgaacgc tatggcctgt gtgagagtga 2821 acaagaggag gaaagcgtcc agacagtaga actacccact gccagtgagg agggcaagaa 2881 caaaggtaag accaagaagg gtcgtgggcg aaagtctaat ttcaatgcct tctccagacg 2941 cggccttagt gatgaggagt atgaagagta caagaaaatc agggaggaga aaagtggcaa 3001 ctacagtata caagagtacc ttgaagaccg acaacgctac gaggaagagc ttgctgaagt 3061 acaggcgggc ggagatggcg gaataggtga aactgaggca gaaatccgcc atcgggtctt 3121 ctataaatca aaatctggta tgaggaaaca acgccaagaa gaacggcgcc agctagggct 3181 cgtgagcggc accgagatca gaaagcgcaa acccatagac tggacccccc ccaagaacga 3241 ttggtcagag gacactagaa cagtcaatta tgacgaacat atcagttttg aagcaccacc 3301 ctcaatctgg agtagagtgg taaaatttgg tagtggttgg ggtttctggg ttagctcaac 3361 agtgttcatc accacgaccc atgtcatacc acctggggcc aaggaagttt ttggtgaaag 3421 catcagtaat gtggctatcc atagagtcgg tgagttcacc cagtttcgct tccctaaaaa 3481 gatgagacct gatctctctg gtatggtgct agaggaaggt tgtccagaag gcacagtatg 3541 caccataatg ataaagagag actctggtga gctgttacca cttgctgttc gcatgggtgc 3601 agtggcctca atgaaaatcc aaggaaagct catgcatgga caatcaggaa tgttgctcac 3661 tggcgccaat gccaaaggca tggacctcgg gaccataccc ggtgactgtg gggcgcctta 3721 cgtccacaaa aggggtaacg attgggttgt ttgcggagtc catgcagctg ccacaaaatc 3781 aggtaacact gtagtttgtg ctatacaagg tggtgagggt gaagccacgc tagagggtgg 3841 cgaccgcaat aagggccatt atgcaggaca cccaatattg agatacggga atggcccttc 3901 actctcaact aaaacaaaat tttggaagtc aaccccacaa cccctacctc caggtactta 3961 tgaaccagct tatctcggag gtagagaccc cagggtcgaa gggggcccat cactacaaca 4021 agttctaagg gaccagctga aaccatttgc tgaacctcga ggcagattac ctgaggcggg 4081 attgctagaa gccgcagttg agacagtcac caatgcactt gaacaggtca tggacacacc 4141 agtggcatgg agtttcagtg atgcttgcat gtctttggat aaaacaacta gctctggcta 4201 tccccaccat aagaggaaga atgatgattg gaatgggagt tcattcgtgc gagagctggg 4261 agaccaagca gcacacgcca ataacatgta tgaacttggc aaacccatga agcccgtgta 4321 cacagcagcc ctcaaggacg agcttgttaa accagataag gtttacaata aaatcaagaa 4381 gagactgctt tggggagctg accttggtac tgtcatacgt gctgctaggg cctttggacc 4441 attctgtgag gccataaagc cacatgtgat taagttgcct atcaaagtgg gcatgaatgc 4501 catagaagat ggccctctga tatatgtaga acattccaaa tataagtacc attatgatgc 4561 tgattacact gcttgggact caacgcaaaa cagagagatt atgatggagt ccttcaacat 4621 catgtgcaag ctcacagcca atccctcctt ggctgcggtg gtggctcagg acctactctc 4681 cccatctgag atggatgttg gtgattatgt aatcagtgtc aaagatggtc tgccatctgg 4741 ctttccatgc acctcacaag tcaacagcat taaccactgg atcatgaccc tatgtgcact 4801 atcagaggtc actggcttat cccctgatgt aatacaatca caatcctact tctccttcta 4861 cggtgatgat gagatagtct caacagacat tgaatttgac ccagctaaat tgacacaaat 4921 attaaaagag tatggcctga aacccacaag gcccgataaa actgatggcc ccattatagt 4981 caggcaacag gtggatggtc tggtcttcct tcgtcgcaca atttcgaagg acgctattgg 5041 gtaccaaggt cgacttgacc gcaactccat tgaaagacaa ctctggtgga cccgcggacc 5101 caaccatgaa gacccgtttg agaccctggt gccacactca caaagaaaag ttcaattgat 5161 atccctactg ggtgaggccg ccctgcatgg tgaaaaattc tacaggaaga tagccagtag 5221 ggtcatccaa gaagttaagg aagggggtct ggagatctat atccctgggt ggcaggctat 5281 gttccgctgg atgcgattcc atgacttaag tttgtggaca ggagatcgcg atctcttgcc 5341 cgattatgta aatgatgatg gcgtctaagg acgccccaac aaacatggat ggcaccagtg 5401 gtgccggtca gctggtacca gaggcaaata cagctgaacc tttaccaata aaaccagtgg 5461 ccggggctgc gactgcggtt gcaaccgccg gtcaggtaaa tatgattgac ccctggataa 5521 tgaataattt tgtacaggct ccccaagggg agtttaccat ttccccaaac aatacacctg 5581 gtgatatttt atttgatttg caattaggac cacatcttaa tcctttcttg gctcatttgt 5641 ctagaatgta taatggttgg gttgggaata tgcaggtccg tataatgctt gctggtaatg 5701 ccttttcagc tggaaagatt attgtgtgct gcataccgcc gggtttttct tctcaatcta 5761 tttctattgc tcaagctaca atgttcccac atgtcatagc tgatgttaga gtgttagaac 5821 ctattgatgt acccttagat gatgttagaa atgtcctttt tcataataat gataaccccc 5881 aaacgatgag attgctttgc atgttgtata caccccttcg gtctggtggt acatcttcag 5941 gtacagatcc ttttgtcatt gctggtcgtg tcttgacctg ccccacacct gattttagtt 6001 tcttgttcct tgtccctcct gatatcgagc aaagaactaa gccattcagt gtacccaata 6061 tccctatgaa cctgatgtcc aactcccgtg tttcaatgtt gattgatggt atgatggttt 6121 caaatgatca gaatcaagtc ccccagtttc agaatggtcg agtcacttta gatggacagc 6181 tgcagggtac caccacagtt tcagctgcgt gtgtagcaag gatgagggga cgcattttta 6241 ataataatgg caattatggt gtgaacctga ctgaactgga tggcaaccct tatcatgcct 6301 ttgatagccc ggctccctta ggctttcctg actttggaaa ttgtgatttg cacatgacct 6361 ttgttaaaat taatcccaat gagttgtcct ctggagaccc ttctggcaaa gtggtcattc 6421 attcctacga tgccactttt gccccccatc ttggtactgt caaactggag aatgatgatg 6481 agctagctcg gtttgtgggt aaggaggtag tactggagct gacgtgggtt tccaacagag 6541 agggtgccac ccttaaccta tgggctgttc caaattatgg ttccaatttg acacaggcgt 6601 cacagcttgc cccaccaatt tacccccctg ggtttggtga ggctattgtg tatttcacct 6661 ctacttttcc aacagtcagc aacccaaaag tcccatgtac acttcctcaa gaatttgttt 6721 cacattttgt caatgaacag gcccccacac gcggcgatgc cgctcttctt cattatgttg 6781 atcctgacac acaccgtaat cttggagagt ttaagatgta ccctgagggc tacatgacat 6841 gtgtccctaa tgctggtggt gggccacaaa ccttaccaat caatggtgta tttgtcttca 6901 tttcttgggt ttctagatat taccagttaa agcctgtggg aactgccggt gcggctagga 6961 ggcttggtct taggagatca taatggccca ggctgtcttg ggagccattg ctgcgactgc 7021 agcagggagt gctgtgggag caggtattga agctggcaca caggccgccc tgcaacatca 7081 aaggtatcaa caggatttaa atatgcagtc cctatccttt caacatgata aagaaatgtt 7141 aggcttacaa gtagatgctt ctaatgcttt attgcaaaga aatttggcca caagatataa 7201 tttgctgagt gcagcaggct tgtcgtctgc agatgctgct aggatgatag caggtgctcc 7261 accaactaaa gtagtggatt ggaatggagt cagaatatct gcccccacat caagtgcaat 7321 aaccctaaaa tctggcagtt ttatgtcagt gccagtcatg aattacaaaa ccaacaagaa 7381 tgtgacaggc atagacaacc caaattatgc acccagtggc tcatcaatgg ttagtcgcac 7441 cagccaatgg gtggaatctc aaaattcatt gcgctcgctt gatcctttcc ataggagcgc 7501 gttgcagaca acgtgggtta ctcctccagg atccacatct gtgtcaacag tgtcaagcac 7561 ttcaacaata cctaggtatt ttaatactga aagacttccg ctattcgcaa atctgcggaa 7621 gtaagttttt gtaatataaa gtgggcatta tattcagatt ggcttttgat tataattaat 7681 ttggctgatt agaaatttaa tgt //