Typing tool
|
Complete norovirus genomes
MW305481 | GI.2 | ||
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GI.P2 |
ORF1: 1..5335 ORF2: 5319..6959 ORF3: 6959..7594LOCUS MW305481 7671 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GI isolate PNV006003 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW305481 VERSION MW305481.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7671) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7671) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7671 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="PNV006003" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122928" /country="Peru" /collection_date="28-Apr-2008" /note="genotype: GI.2[GI.P2]" gene <1..5335 /gene="ORF1" CDS <1..5335 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPJ58779.1" /translation="NVASNNNANNTSATSRFLSRFKGLGGGASPPSPIKIKSTEMALG LIGKTTPEATGTAGPPPKQQRDRPPRTQEEVQYGMGWSDKPVDQNVKSWEELDTTVKE EILDNHKEWFDAGGLGPCTMPPTYERVKDDNSPGEQVRWSARDGVNIGIERLTTVSGP EWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAFSV ARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCFEFCCQVMNLED TWLQRRLITSGRFHHPTQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFLGK LKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGPED LARDLVPVILGGMGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKKYFFG GDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARRLSARNA DPHVISSTNALISRISMARSALAKAQAEMTSRIRPVVIMMCGPPGIGKTKAAEHLAKR LANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAPLT LNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQVRR VSPGDTSALKDCFKPDFSHLKMELAPQGGFDNQGNTPFGRGTMKPTTINRLLIQAVAL TMERQDEFQLQGKMYDFDDDRVSAFTSMARDNGLGILSMAGLGKKLRGVTTMEGLKNA LKGYKISACTIKWQAKVYSLESDGSNVNIKEERNILTQQQQSVCTASVALTRLRAARA AAYASCVQSAITSILQIAGSALVVNRAVKRMFGTRTATLSLEGPPREHKCRVHMAKAA GKGPIGHDDVVEKYGLCETEEDEEVVHAEIPTATIEGKNKGKNKKGRGRRNNYNAFSR RGLNDEEYEEYKKIREEKGGDYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRH RVFYKSKSRKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNEKISFE APPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSIAIHRAGEFTLF RFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHG QSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQAS EGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRDPR VTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDAC QSLDKTTSSGFPYHRRKNDDWNGTTFIRELGEQAAHANNMYEQAKSMKPMYTAALKDE LVKPEKVYQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGP LIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSE MDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYG DDEIVSTDIEFDPAKLTQVLREYGLRPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAA GFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKI SSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" mat_peptide <1..1165 /gene="ORF1" /product="p48" mat_peptide 1166..2254 /gene="ORF1" /product="NTPase" mat_peptide 2255..2851 /gene="ORF1" /product="p22" mat_peptide 2852..3265 /gene="ORF1" /product="VPg" mat_peptide 3266..3808 /gene="ORF1" /product="Pro" mat_peptide 3809..5332 /gene="ORF1" /product="RdRp" gene 5319..6959 /gene="ORF2" CDS 5319..6959 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPJ58780.1" /translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAIA TAGQVNMIDPWIINNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDTSQVVQFQNGRCLIDGQ LLGTTPATSGQLFKVRGKINQGGRTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR ISKTPNNTRAGDPMRSVSVQTNVQGFVPHLGSIQLDEEFNHPTGDYIGTIEWISQPST PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFTSAFPGPNNRSVSNDVPC LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYVTCVPNGVGAGPQ QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI" gene 6959..7594 /gene="ORF3" CDS 6959..7594 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPJ58781.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG IRVAAPRSSATTLRSGGFMAVPMPVQPKSKAPQSSGFSNPAYDMSTVSSRTSSWVQSQ NSLRSVSPFHRQALQTVWVTPPGSTSSSSVSSSPYGVFNTDRMPLFANLRR" ORIGIN 1 taatgttgca agcaataaca atgctaacaa cactagtgct acatctcgat ttttatcgag 61 atttaaaggc ttaggaggtg gcgcaagccc ccctagccct ataaaaataa agagtactga 121 aatggccctg gggttaattg gtaaaacgac cccagaggca acagggactg ctggcccccc 181 acctaagcaa cagagggacc gacctcccag gacccaagag gaggtccagt atggtatggg 241 gtggtctgac aagcccgttg atcaaaacgt caagtcttgg gaagagcttg ataccacggt 301 caaggaagaa atcctggata atcacaaaga atggtttgat gctggcggct tgggcccttg 361 cacaatgcct ccaacatatg aacgggtcaa ggatgataat tcacctggtg aacaagtcag 421 gtggtccgca cgtgatgggg tcaacattgg aatagaacgt ctcacaacag tgagtggacc 481 tgaatggaac ctctgccctc taccccccat tgacctgagg aacatggaac cagcaagtga 541 acccaccatt ggagacatga tagaattcta tgaaggccat atctatcatt attccatata 601 tattggacag ggcaagacag ttggcgttca ttccccacag gcagcgttct cagtggccag 661 ggtgactatc cagcccatag ccgcttggtg gagggtctgc tacatacccc aacccaagca 721 caggctaagt tacgatcaac tcaaggaatt agagaatgag ccatggccat atgcggccat 781 aaccaacaat tgttttgagt tctgctgcca agtcatgaac cttgaggaca catggctaca 841 gaggcggcta atcacatcgg gcaggtttca ccaccctacc caatcgtggt cacaacaaac 901 ccctgagttc cagcaagata gcaagttgga gttggtcagg gatgctatac ttgctgcagt 961 gaatggcctt gtctcacaac cttttaaaaa tttcttgggt aaactcaaac ccctcaatgt 1021 gctcaacatc ctatccaact gtgattggac ctttatggga gtggttgaaa tggttatact 1081 gttgcttgaa ctctttggtg tgttctggaa cccacctgat gtgtccaact tcatagcgtc 1141 ccttctccct gacttccatc ttcaggggcc cgaagactta gcacgagacc tagtcccagt 1201 gatccttggc ggtatggggt tagctattgg gttcaccagg gacaaggtca caaaggttat 1261 gaaaagtgct gtggatggcc ttcgagctgc tacacagctt ggacaatatg ggttagaaat 1321 attctcacta ttgaaaaagt acttctttgg gggggaccag actgaacgca ccctcaaagg 1381 cattgaggca gcagtcatag atatggaggt gttatcctct acatcagtaa cacaactagt 1441 gagggacaaa caggcagcta aagcttatat gaacatctta gacaatgaag aagaaaaggc 1501 taggaggctc tctgccagga acgctgaccc acatgtgatc tcttcaacaa atgccctgat 1561 atcgcgcata tccatggcac gatctgcatt ggctaaggcc caagctgaga tgaccagtcg 1621 gataagacca gttgtcatta tgatgtgtgg tccacctggg attggaaaga ccaaggctgc 1681 tgagcatttg gcaaagcgtc tagccaatga gatcagaccc ggtggcaagg tggggttagt 1741 accccgtgaa gctgtcgacc actgggacgg ttaccatggt gaggaagtca tgctatggga 1801 tgattatggc atgacaaaaa tacaagacga ctgcaacaaa ctccaggcca ttgctgattc 1861 ggccccactc accctaaatt gtgacaggat tgagaacaaa ggaatgcagt tcgtgtcaga 1921 tgcaatagtc attaccacca acgccccagg ccccgcccct gtagattttg ttaatctcgg 1981 cccagtgtgc aggcgggttg acttcctagt ttattgttcc gctcctgaag tggagcaagt 2041 aaggagagtc agccctggtg atacatcagc actgaaggac tgtttcaagc cagacttctc 2101 ccatctaaaa atggaactgg ccccacaagg ggggtttgac aaccaaggga acacaccatt 2161 tggtagaggc accatgaagc caacaaccat taaccggctc ctcatacaag ctgtggccct 2221 caccatggag agacaagatg agttccagtt gcagggaaag atgtatgatt ttgatgatga 2281 cagggtctca gcattcactt ccatggcacg tgacaacggc ctaggcatct tgagcatggc 2341 aggtcttggc aagaagctac gcggtgtcac gacaatggag ggcctgaaga acgcattgaa 2401 gggatacaaa attagtgcat gcacaataaa atggcaagcc aaagtgtact cactagagtc 2461 agatggcagc aatgtcaaca ttaaagaaga gaggaacatc ctgactcaac aacaacagtc 2521 agtgtgcact gcctccgtcg cgcttactcg ccttcgggct gcgcgcgcgg cggcatacgc 2581 ttcatgcgtc caatcggcca taacttccat actacaaatt gctggctcag ccctagtggt 2641 taatagggcg gtgaagagaa tgtttggcac gcgcactgcc accttgtccc tagagggccc 2701 ccccagagaa cacaaatgca gggtccatat ggccaaggcc gcaggaaagg gacctattgg 2761 ccatgatgat gtggtagaaa agtatggact ttgtgagact gaggaggatg aagaagtggt 2821 tcacgctgaa attccaactg ctaccataga gggcaagaat aaaggaaaga acaagaaagg 2881 acgtggccga aggaacaact acaatgcctt ttcccgtaga gggcttaatg atgaggagta 2941 cgaagagtac aagaagatac gtgaggagaa aggcggtgat tatagcatac aggagtacct 3001 agaagacaga caaaggtatg aagaagagct tgcagaggtt caggcaggcg gagatggagg 3061 aatcggggaa actgaaatgg aaatccgcca cagggtgttc tacaaatcta agagcaggaa 3121 gcaccaccag gaagaaaggc gtcagctggg gctggtgaca ggctccgata ttcgcaagag 3181 aaaaccaatc gactggaccc cacccaagtc agcatgggca gatgacgagc gtgaggtgga 3241 ttacaatgag aagatcagct ttgaggcgcc ccccacccta tggagtagag tgacaaagtt 3301 cgggtccgga tggggtttct gggtcagtcc cactgtcttc ataaccacaa cgcacgttat 3361 accaactagt gcgaaggaat tctttggtga gcccttaacc agcatagcta tccacagggc 3421 aggcgagttc actctcttca ggttttcaaa gaaaatcaga cctgacctca caggtatgat 3481 ccttgaggag ggttgtcctg agggcacggt gtgctcggtg ctaataaaga gagactctgg 3541 tgaactgttg ccgttggccg tgagaatggg cgcaatagca tcaatgcgca tacagggccg 3601 tcttgtccac ggacaatctg gcatgttact cactggagcc aacgccaagg gcatggatct 3661 tggaaccata ccaggagatt gtggggcccc ctatgtctat aaaagagcca atgactgggt 3721 ggtctgtggt gtgcacgccg ctgccaccaa atcaggcaac actgttgtgt gtgctgtcca 3781 ggccagtgaa ggagaaacca cgcttgaagg tggcgacaaa ggccattatg ctggacatga 3841 aataattaag catggttgcg gaccagccct gtcaactaaa accaaatttt ggaagtcatc 3901 ccctgaacca ttaccccctg gggtttatga acctgcatat cttggaggcc gagaccctag 3961 ggtgactggt ggtccctcac tccagcaagt gttacgggat cagttaaaac catttgctga 4021 accacgagga cgcatgccag agccaggcct cttggaagct gcagttgaga ctgtgacttc 4081 atcattagag caggttatgg acacccccgt cccttggagc tacagtgatg cgtgccagtc 4141 ccttgacaaa actactagtt ctggcttccc ctaccacagg aggaagaatg atgactggaa 4201 tggtaccacc tttattaggg agctagggga gcaagcagca catgccaaca atatgtatga 4261 acaagctaaa agcatgaagc ccatgtacac ggcagcgctt aaagatgaat tagtgaaacc 4321 agaaaaagtg taccagaaag tcaaaaagcg cttattgtgg ggggcagatt tgggcacggt 4381 agtccgtgct gcacgggctt tcggcccatt ctgtgatgcc ataaagtccc acacaatcaa 4441 attacctatc aaagttggga tgaattcgat tgaagatggg ccattaattt atgctgaaca 4501 ttcaaagtat aaatatcact ttgatgcaga ttatacagct tgggactcaa ctcaaaatag 4561 gcaaatcatg actgagtcat tttcaatcat gtgccgactc acagcatcac ccgagttggc 4621 ttcggtggtg gctcaagact tactcgcacc ctcagaaatg gacgttggcg actatgtcat 4681 aagagtcaaa gagggcctcc catctgggtt cccatgtaca tcacaagtca atagtataaa 4741 tcattggcta ataaccctgt gtgccctttc tgaagtaact ggtctatcgc cagacgttat 4801 ccagtccatg tcatacttct ctttctatgg tgatgatgag atagtatcaa ctgacataga 4861 atttgatcca gcaaaactga cacaagttct cagagagtat gggcttaggc ctactcgccc 4921 tgacaagagt gagggcccaa taattgtaag gaagagtgtg gacggcttgg tcttcttgcg 4981 tcgcaccatt tcccgtgacg ctgcgggatt tcaagggcga ctggaccgag catccattga 5041 aaggcagatc tactggacca ggggacctaa tcattcggac ccttttgaga ccctagtgcc 5101 acaccaacaa aggaaagtcc aattaatttc actactaggt gaagcctcat tacatggtga 5161 aaagttttat aggaagattt caagcaaagt catccaggag attaagacag ggggtcttga 5221 aatgtatgtg ccaggatggc aagccatgtt ccgttggatg cggttccatg atcttggctt 5281 gtggacagga gatcgcaatc tcctgcccga atttgtaaat gatgatggcg tctaaggacg 5341 cccctcaaag cgctgatggc gcaagcggcg caggtcaact ggtgccggag gttaacacag 5401 ctgacccctt acccatggaa cccgtggctg ggccaacaac agccatagcc actgctgggc 5461 aagttaatat gattgatccc tggattatta ataattttgt ccagtcacca caaggtgagt 5521 ttacaatttc ccctaataac acccccggtg atattttgtt tgatttacaa ttaggtccac 5581 atttaaatcc cttcttgtca catttgtccc agatgtataa tggctgggtt ggaaatatga 5641 gggttaggat tctccttgct gggaatgcat tctcagctgg aaagattata gtttgttgtg 5701 tcccccctgg ttttacttcc tcctctctta ctatagccca ggccacattg tttccccatg 5761 tgattgctga tgtgaggact cttgaaccaa tagaaatgcc tcttgaggat gtgcgtaacg 5821 tcctctacca caccaatgat aaccaaccaa cgatgcggct ggtgtgtatg ctgtacacgc 5881 ctctccgcac tggtggaggg tctggcagtt ctgactcttt cgtagttgct ggtagggtgc 5941 tcacggctcc tagcagcgac ttcagcttct tgttcctcgt tccacctact atagaacaga 6001 aaacccgggc tttcactgtg cctaacattc ccctgcaaac cttgtccaat tctaggttcc 6061 cttccctcat tcaaggaatg attctatccc ctgacacatc ccaagtggtc caattccaga 6121 atggacgttg cctcatagac ggtcaactcc taggcaccac acctgctaca tcaggacagc 6181 tattcaaagt aagaggaaag ataaatcagg gaggccgcac actcaacctt acagaggtgg 6241 atggcaaacc gttcatggca tttgattccc ctgcacccgt ggggttccct gattttggaa 6301 aatgtgattg gcatatgagg atcagcaaga ctccaaataa cacaagagca ggtgacccca 6361 tgcgtagtgt cagtgtgcaa accaacgtgc agggttttgt gcctcatctg ggaagcatac 6421 agcttgatga agaattcaac caccccacgg gtgactacat tggcaccatt gaatggattt 6481 cccagccatc tacacccccc ggaacagata ttaacttgtg ggagattccc gattatgggt 6541 catctctttc ccaagcagct aatttggccc ctccagtgtt cccccccgga tttggtgagg 6601 ctcttgtgta cttcacttct gcttttccag gtcccaataa tcgttcagtt tcaaatgatg 6661 tgccttgcct tcttccccaa gaatacataa cccactttgt tagtgagcag gccccaacta 6721 tgggtgacgc agctttgctg cattatgttg accctgatac caacaggaac cttggggagt 6781 tcaaactata ccctggaggt tatgtcacct gtgtgccaaa tggggtgggt gccgggcctc 6841 aacagcttcc tctcaatggt gtctttctct ttgtctcttg ggtatctcga ttttatcagc 6901 tcaagcctgt gggaacagcc agtacggcaa gaggtaggct tggagtgcgc cgcatataat 6961 ggcccaagcc attataggag caattgccgc gtcggctgct ggctcagcac tgggtgcagg 7021 catccaggct ggtgccgaag ctgcgcttca gagtcagaga taccaacagg acttagccct 7081 gcaaaggaat acatttgaac atgacaaaga tatgctctcc taccaagtcc aggcaagcaa 7141 cgcactccta gccaaaaatc tcaacacccg ctattctatg cttgttgcag gaggtctttc 7201 tagtgctgat gcttcaagag ctgttgctgg agctccagtg acacaattga ttgattggaa 7261 cggtattcgg gttgccgccc ccagatcaag tgcaacaacc ttgaggtctg gtggtttcat 7321 ggcagtccct atgcctgttc aacccaaatc taaggccccg caatcttctg ggttctctaa 7381 tcctgcttat gatatgtcta cagtttcttc tagaacttct tcttgggtgc aatcacaaaa 7441 ttccttacga agtgtgtcac cattccatag gcaagctcta cagaccgtgt gggttacccc 7501 acctgggtcc acttcctctt cttctgtctc ttcttcacct tatggtgttt ttaatacaga 7561 tagaatgccg ctattcgcaa atctgcggcg ctaatgttgt aatataatgc agcagtgggc 7621 actatattca atttggttta attggtaact aatttgatca ttgattagtg t //