Typing tool
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Typing tool
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Complete norovirus genomes
| MW284784 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS MW284784 7491 bp RNA linear VRL 28-NOV-2020
DEFINITION Norovirus GII isolate P1D12 nonstructural polyprotein (ORF1), VP1
(ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MW284784
VERSION MW284784.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Kelly,D., Jere,K.C., Darby,A.C., Allen,D.J. and Iturriza-Gomara,M.
TITLE Magnetic bead enrichment and complete genome characterisation of
human norovirus populations: A longitudinal comparison of acute and
chronic infection
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Kelly,D., Jere,K.C., Darby,A.C., Allen,D.J. and Iturriza-Gomara,M.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2020) Institute of Infection, Veterinary and
Ecological Sciences., University of Liverpool, 8 West Derby Street,
Liverpool, Merseyside L69 7BE, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.5.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="P1D12"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="United Kingdom: Liverpool"
/collection_date="Dec-2013"
/note="genotype: GII.P7/GII.7"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QPG52062.1"
/translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSGQHCPTVKVGPKTLTIPPEPPNGEDTVQFNAKSETIVGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGRALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQPWNRKPLPTVDDGKIKKVANAILCALGSLFSRPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKQEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAI
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVRPTETQEVNEPEK
EVAQGKWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ETFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6701
/gene="ORF2"
CDS 5079..6701
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QPG52063.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 6701..7474
/gene="ORF3"
CDS 6701..7474
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QPG52064.1"
/translation="MASAFLANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQPLKVDSSPPFSSGSSVSSVKTQ
STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac tgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtaac aacgccaccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggattc aagaaaatgc tgggtgccgt tcccaagggc accaaagcac ccagcagtgg
181 tcaacactgc cccacagtta aggtcgggcc taaaacatta acaatccccc ctgagccccc
241 aaatggtgaa gacaccgtac agttcaatgc aaagtcagaa actatagttg ggttgccgga
301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cattaagtga
361 gagggagcac aggccggcca ccgagccact tcctggcaca atattggaga tgtgggatgg
421 tgagttttac cattattccg tgtacgtcag cgacggcaga gctctggggg tccacaaacc
481 accagcggct ataagcctcg cgacaataga gctcaccccc atatcactct actggaggcc
541 cgtttacacc cccaattact tggtctcccc ggacacatta aagggtctcg ctggtgagaa
601 gttcccctat acggccttca gtaacaactg ttataacttc tgttgttggg tgcttgagct
661 caacgacacg tggcttaaca gaagatgcat ttccagaacc accggcttct tcaagccata
721 ccagccttgg aacagaaaac ctctcccaac cgttgatgat ggaaagatta aaaaggtggc
781 caatgcaatc ctctgtgcac tcggctcact gttctcaaga ccaatcaaag acctgttagg
841 caaactcaag ccattgaatc tactgcactt gcttgcgtct tgtgattgga cgtttgcggg
901 tatagtggag acagtcatct tgatggcgga gcttttcaat gtcttctgga cccccccaga
961 tgtctctaat tttatagcct ccctaatagg tgattttgaa ttgcaagggc ctgaggacct
1021 ggctgtggag ctcgtccccg tggtcatggg cggcataggg atggttctcg gtttcaccgc
1081 cgagaagata ggccgcatgc tgtcgtctgc cgcatcaaca ctgcgggcgt gcaaagacct
1141 agggaactat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc cgaagaagca
1201 agagaaggct gagatggaaa ccttgagggc gattgaagat gccgtcctgg atatggaagc
1261 catagggaac aaccacctca caacccttct taaggacaaa gatagcctca cggctttcat
1321 gaagaccctg gatctggaag aggagaaggc aaggaaactg tccactaaat catcttcacc
1381 ggacatagtc ggcaccatca atgccatact agctaggata gctgctgcta gatcccttct
1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggttgtta tgatctcagg
1501 caggcctggc attggaaaaa cccacatggc gagacatttg gctaagagca tcgccaacac
1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggcgtcgatc actgggatgc
1621 ctacagggga gagagggtgg tcttgtggga tgactacggc atggggagcc ctgttaagga
1681 cgctctaaca ctgcaagagc tggccgacac atgcccagtc actttaaatt gtgacaggat
1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt
1861 ctacgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
1921 gtggaaagac cattttaaac cagacttctc ccacatcaag ctgactctag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggtaaggga accatgcggt ccctaaccca
2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg aattccagct
2101 ccaaggaaat gacctccaaa catacaactt tgacaccaac agagtctccg cattcaggaa
2161 attggctgca gataacaagt atgggatcat ggagacgatg agagtgggtg cggcactcaa
2221 gaatgtgaag accttggaag atcttaaaat tgcattgagg gatgtaaaat tcaatgagtg
2281 tgaaataatc tacaagaact ctaagtatcg agtctcttcc aacggtaaag gctcagtttc
2341 tgttgacaaa gttgaggaca atgcatccca gactgtaaac gaggtacaat cagcaattct
2401 caggctcagg caagcgaggg ccagatatta catcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccggag catcattcgt agtcaacagg atctccagaa ggttctgctg
2521 ggaaaggtgg gtcagaccga ccgagaccca ggaggtgaat gagcccgaaa aggaagtggc
2581 acaaggcaaa tgggaaattg agcccaagga tacagaacca gaaggcaaga aaggtaagaa
2641 caagaaagga agaggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaacgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcga cagaagagga
2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca
2881 gaggaaggag gagaggggtg tgcttggctt agtcaccggc tcagacatca ggaagaggag
2941 accagatgac ttccaaccaa aaggcaacct atgggcagat gacaccagaa gtgtggacta
3001 caatgagagg cttgattttg aagcgccccc gagtgtttgg tcaagaatag ttccattagg
3061 cactggttgg ggattctggg tctcatccaa ccttctgatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggagctct ttggagttga gatcaaacaa atccaagttc acaagtctgg
3181 agagttttgc aggttcagat tcccaagacc tatcaggcca gatgtcacag gactcgtgct
3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaaggc ccacaggtga
3301 gatgatcccc ttagcagtga ggatgggcac acatgcatcc atgaaaatac agggcagaac
3361 cgttggtggc cagatgggaa tgcttcttac aggagcaaac gcgaagaaca tggacctcgg
3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaacg acattgttgt
3481 cgcgggtgtt cataccgcag cagcccgagg aggcaacact gttatatgtg ccacccaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc
3601 aattctgggc cctggcaagg cgcctaaact cagcacgaag accaagttct ggcgttcatc
3661 accagatgcc ttgccacctg gcacatatga acctgcttac ctaggaggca aagaccctag
3721 agtggaaaaa ggtccttccc ttcaacaagt catgagagac cagttgagac ccttcacaga
3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa
3841 tgttctagaa caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc
3901 actggacaaa accacctcca gtggtagtcc ccatcatgtt aagaaaaatg accactggaa
3961 tggggagacc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga
4021 gcaggctaaa catgtgcagc ccgtgtatac ggccgcgctc aaagatgagc ttgttaagac
4081 tgacaagatc tacaaaaaga taaagaagag gctcctatgg gggtcggacc ttggcacgat
4141 gatcaggtgc gccagggcct ttggtggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtaggaa tgaacatgaa tgaagatggc cctattatat ttgacaaaca
4261 ttctaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccaacaaag
4321 gagcattctt tctgccgcta tggaagtgat ggtgcggttc tctgctgaac cagaattggc
4381 acaagtggtc gcagaggacc ttttagcacc tagccagctt gatgttggcg attttgtcat
4441 ctcagtccag gagggtctgc catcaggagt cccatgcaca tcacaatgga attcaatagc
4501 acactggatt ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcttgttttt ccttttatgg ggacgatgag atcgtcagta ctgatatcaa
4621 tcttgacccc atgaagttga cacagaaact cagggagtat ggtctggttc ccacccggcc
4681 tgacaaaact gaaggtcccc tcgtcataac tgaagacctc accggcctga cgttcctccg
4741 taggtcgatt gctcgggacc cagctggttg gtttggaaag ctggaccaag actcaatcct
4801 taggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggttcc
4861 tcattctcag cgggctacac aactcatggc ccttcttggt gaggcctcac tacatggccc
4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaac aattttgtac aagctcctgc aggtgagttt acagtttccc
5281 ctagaaattc ccctggtgaa attttactcg atttggagtt gggaccagaa ctaaacccct
5341 atctcgctca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg
5401 tgttggctgg gaatgcgttc acagctggca agatcatatt tgctgccatc cctccagggt
5461 ttccatatga aaatttgtca ccttcacaaa tcacaatgtg ccctcatgtt ataattgatg
5521 ttagacaatt agaaccagtt ctattaccta tgccagatat tagaaacaat ttcttccatt
5581 acaatcaggg caatgaccca aaattgagat tggtagctat gctctatacc cctttaaggg
5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggtcctcact aaaccgtcac
5701 ctgattttga attcacattt ttggtccccc ctacggttga atctaaaacc aaacagttca
5761 cattgcccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa
5821 tgatgtacac agccaggaat gagaaccaag ttgtccagcc acagaatggt agggtcacac
5881 ttgatggcga gctattaggc accacaccct tgttggctgt caacatctgc aaattcaagg
5941 gggaggttat agctaagaat ggagatgtga gatcctatag gatggacatg gaaattacca
6001 acactgatgg caccccaatt gaccccacag aagacacacc tggtcccatt ggttcacctg
6061 actttcaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg
6121 ccacgagagc ccatgaagcc aacattaaca ctggtgggga ccaatatgcc cccaaattgg
6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca
6241 ccccagttgg tgtggcaggc gacacctccc atcctttcag acagtgggtc ctgcctcgat
6301 acggtggaca tctcaccaac aacacccact tggctccagc agtggccccc ctattcccag
6361 gtgagcagat tctattcttt agatcacaaa tacccagctc aggcggccat gaattgggtt
6421 acatggactg ccttgtccca caagaatggg ttcaacactt ctatcaagaa gctgccacag
6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg
6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca cactggtgat aacccaattg
6601 tcatgccacc aaatgggtac tttagatttg aagcttgggt taatcagttt tactcactcg
6661 cccccgtggg aactgggaat gggcgcagaa ggatccaata atggccagtg ctttccttgc
6721 aaatttggca ggaggcgttg cctccaatgg aattagttca ctcataaatg ctggggctaa
6781 tgctattaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc
6841 ccatgataag gaaatgctcc aagcccaaat tgaagccacc aaacgtctgc aacaagagat
6901 gattgatata aaacaagggg tgctgacagc tgcgggattc tctcctacgg atgccgcgag
6961 gggttctgtc ggcgcgccaa tgacaaaatt agttgattgg agtggcacta gatattgggc
7021 gcctggtgcc atgaggacaa caggctattc agggactttt actcacttac cccctgtgca
7081 gtctgcttca tatgttaaca atcaaaatag acaacctctt aaagtagatt cttctcctcc
7141 tttttcgagt ggttcttctg tttcttctgt caaaacacaa tcaactaccc tctcaggcac
7201 ttcaagggtg ggctcctcat ctcagtcaac cctgtcgacc aggccgagca caaggacatc
7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac
7321 aacatatgta acgccaccat ccagtagggc atcaagtgtc agcacagtct cgaccgtgcc
7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc
7441 ccatctgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag g
//