Typing tool
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Typing tool
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Complete norovirus genomes
| MW045405 | GII.17 | |
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| GII.P13 |
ORF1: 1..5097
ORF2: 5078..6700
ORF3: 6700..7020
LOCUS MW045405 7020 bp RNA linear VRL 29-DEC-2020
DEFINITION Norovirus GII isolate 1065 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION MW045405
VERSION MW045405.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7020)
AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P.
TITLE Next Generation Sequencing of Near-Full Length Genome of Norovirus
GII.4 from Botswana
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7020)
AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-2020) Biosciences and Biotechnology, Botswana
International University of Science and Technology, Khurumela,
Palapye 00, Botswana
COMMENT ##Assembly-Data-START##
Assembly Method :: Genome Detective v. 1.126
Sequencing Technology :: Oxford Nanopore(MinION)
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7020
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="1065"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Botswana: Gaborone"
/collection_date="13-Apr-2017"
/note="genotype: GII.4 Sydney[GII.P13]"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QOD59272.1"
/translation="KMASNDASAAAAANSNNDIAKSSSDGVFSNMAVTFKRALGARPK
QPPPKEIPTRPPRPPTPELVKKIPPPPPNGEEELVVSYSAKDGVSGLPELTTVSQPEE
TNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL
AKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL
KPLNILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELA
RKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMP
DLKQALKNVAIKKCQIVYNGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETASKDGCP
KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIRDERNGK
YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GTEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSSN
LLITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPKPIRPDVTGLVLEEGAPEGT
VCSILIKRPTGEMMPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDC
GCPYIYKRGNDFVVAGVHTAAARGGNTVICATQGQDGEAVLEGGEDRGTYCGAPILGP
GKAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRDVLAAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTS
QWNSISHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLYWTKGPN
HEDPSETMIPHAQRPVQLMSLLGEASLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2622
/gene="ORF1"
/product="p22"
mat_peptide 2623..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6700
/gene="ORF2"
CDS 5078..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QOD59273.1"
/translation="MKMASNDAAPSNGSAANLVPEINTETLPLEPVAGAAIAAAVTGQ
NNIIDPWIRNNFVQAPNGEFTVSPRNSPGEILLNLELGPGLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNNFFHYNQQTDPRINLVAMLYTPLRSNNSGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASLNWNSYDPTEEIPAPLGTPDFVGKIQGML
TQTTRADGSTRGHKATVYTGSADFSPKLGRVQFQTDTDHDFEAHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTLNVHLAPPVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6700..>7020
/gene="ORF3"
CDS 6700..>7020
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QOD59274.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTK"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgctgcca acagcaacaa cgacatcgca
61 aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaaacg ggccctcggg
121 gcgcggccta aacaaccgcc cccgaaggaa ataccaacca gacccccacg accacccaca
181 ccagaattgg tcaaaaagat cccccctccc ccacccaacg gggaggaaga attagtggtt
241 tcttacagcg ccaaagacgg cgtttccgga ttgcctgagc ttaccactgt cagccaaccg
301 gaagaaacca atacggcgtt cagtgttccc ccgctcaatc aaagggagaa tagggacgcc
361 aaggaaccac taactgggac aattattgaa atgtgggatg gagaaatcta ccattacggc
421 ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccagcagc catcagcctt
481 gccaaggtcg agttaacacc actctctttg ttctggagac ctgtgtacac cccccagtat
541 ctcatctctc cagacactct caggagacta catggagagt cattccccta caccgcattt
601 gacaacaatt gctacgcctt ctgctgttgg gtattagacc taaacgactc atggctaagt
661 aggagaatga ttcagagaac aacaggtttc ttcagaccat accaggagtg gaacaggaaa
721 cccctcccca ctatggatga ctccaaattg aagaaggtag ccaacatatt cttgtgcacc
781 ctgtcctcac tattcaccag acccattaag gacataatag gaaaattgaa acctcttaac
841 attctcaata ttctggctac atgtgattgg accttcccag gtatagtgga atccctaata
901 ctcttggcag agctctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc
961 cctttactag gtgattatga actgcaagga cctgaggacc ttgcagtaga actagtccca
1021 gtggtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat tggaaagatg
1081 ctgtcgtccg ccgcatccac tttgagagcc tgtaaagatc ttggagcgta cggactggaa
1141 attttaaaat tagtcatgaa atggttcttc ccaaagaaag aggaagcaaa tgaactggct
1201 atggtgagat ccatcgagga cgcagtgctg gacctcgagg caattgaaaa caaccacatg
1261 accaccctgc tcaaagataa agacagcttg gcaacttaca tgagaaccct tgaccttgag
1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ctgatattgt gggcacaatc
1381 aactctcttc ttgcacgaat cgctgctgca cgttccctag tgcatcgggc gaaagaagag
1441 ctctccagca ggccgagacc tgttgttgtg atgatatcgg gaaaaccagg gatagggaaa
1501 acccatcttg ccagggagtt ggccaggaag atcgcagcct ccctcacagg ggaccagcgt
1561 gtgggcctga tcccacgcaa tggcgttgac cactgggacg catacaaggg tgaaagagtt
1621 gtcctatggg acgactatgg gatgagcaac cccatacacg atgccctcag gttgcaggaa
1681 cttgctgaca cttgccccct cacgctaaat tgtgacagga ttgagaacaa aggaaaagtc
1741 tttgatagtg atgccataat tatcaccacc aatctggcca acccagcacc actggattat
1801 gtcaattttg aagcgtgctc gaggcgcatt gatttcctcg tgtacgcgga ggctcctgag
1861 gtggagaagg caaaacgcga cttcccaggc caacctgaca tgtggaagaa cgctttcagt
1921 cctgacttct cacacataaa actggcattg gctccacagg gtggttttga caagaacggc
1981 aacaccccgc atggaaaagg tgttatgaag actctcacca ctggctccct cattgcccga
2041 gcatcaggat tactccatga gagactagat gaatatgaat tgcaaggccc agccctcacc
2101 accttcaact ttgaccgcaa caagatactt gcatttagac agcttgctgc tgaaaacaag
2161 tatgggttga tggacacaat gagagttgga aaacagctta aggatgtcaa gaccatgcca
2221 gaccttaaac aagcactcaa gaatgtcgcg atcaagaagt gccagatagt gtataatggt
2281 agcacctaca cgcttgaggc cgatggcaag ggtagtgtga aggttgacaa agtgcagagt
2341 gccaccgtgc aaactaacaa tgaactagcc ggcgccctgc accacctgag gtgcgccaga
2401 atcaggtact atgtcaagtg tgtccaggag gcattgtatt ccatcatcca aatcgctggg
2461 gccgcgtttg tcaccacgcg catcgccaag cgcatgaaca tacaaaacct ctggtccaag
2521 ccacaggtgg aagacacaga agagacggcc agcaaagatg gttgcccaaa acccaaagat
2581 gatgaagagt tcgtcgtttc atccgacgac atcaagactg agggcaagaa agggaagaac
2641 aagtccggcc gtggcaagaa gcacacagcc ttctcaagca aagggctcag tgatgaggag
2701 tacgatgagt acaagagaat cagagatgaa aggaatggta agtactccat agaagagtac
2761 cttcaggaca gagacaagta ctatgaggag gtggccattg ccagggcaac tgaagaggac
2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt ttagaccaac aaggaaacaa
2881 cgtaaagaag agagggcctc tttaggcttg gtcacaggca cagagatcag gaagagaaac
2941 ccagaagact tcaaacccaa gggaaagctg tgggctgatg atgacagaag tgttgactac
3001 aacgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt
3061 tcaggttggg ggttctgggt ttcatccaac cttctgatca caacaacaca cgttctgcct
3121 aaaggggtta aggaactctt tggagttgaa attaaacaaa tccaagtcca caagtctgga
3181 gagttctgca gattcagatt cccaaaacca atcaggccag atgtcacagg acttgtgctg
3241 gaggaaggag ccccagaagg cactgtctgt tccatactca taaagaggcc tacaggtgag
3301 atgatgccct tggcagtgag gatgggcaca catgcatcca tgaaaataca gggccggacc
3361 gttggtggcc agatgggaat gctcctaaca ggggcgaatg caaagaacat ggatctcggc
3421 actggtcctg gtgactgcgg ttgtccctac atctacaaac gcggcaacga ctttgttgtc
3481 gctggtgttc acaccgcagc agcccgggga ggcaacactg tcatatgtgc cacccaaggg
3541 caggatgggg aggcagtcct tgaaggaggt gaggaccgtg gcacctactg tggcgcccca
3601 atcctgggcc ctggcaaggc gcccaaactc agcaccaaga cgaaattttg gagatcatcc
3661 acaacgccac tcccaccagg cacctacgag ccagcctacc tcggtggcaa ggaccccaga
3721 gtcaaaggtg gtccttcatt gcaacaagtt atgagggacc agttaaaacc attcacagaa
3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcattaat
3841 gttcttgagc aaacaattga cccaccccaa aaatggtcat tcgcgcaagc atgcgcatcc
3901 cttgacaaaa ctacctccag cggccaccca caccacatgc ggaaaaacga ttgctggaat
3961 ggggagtcct ttacaggaaa attggcagat caggcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaact ggtgaagact
4081 gacaaaattt atggtaagat caagaagagg ctcctgtggg gctcggacct ggcgaccatg
4141 atacggtgcg cccgggcttt tgggggcctc atggatgaac tcaaggctca ctgtgtcacc
4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccataatctt tgagaagcac
4261 tccagatata aatatcacta tgatgctgat tactccaggt gggactcaac acaacaaagg
4321 gatgtgctag cagcagcact agaaatcatg gtgaggttct ctgctgagcc acaattggca
4381 cagatagtgg ctgaagacct gctctcacca agtgtggttg atgtgggtga tttcaaaatt
4441 acaatcaatg aaggccttcc atccggcgtg ccctgcacgt cccagtggaa ctcaatctcc
4501 cattggctac tcacattgtg tgccttatct gaagtgacag gactaggtcc tgacatcata
4561 caggccaact ccatgtactc cttctatggt gatgatgaaa ttgtgagcac tgacataaaa
4621 ttggacccag agaaattgac tgcaaagctc aaagagtatg gcctcaagcc cactcgtcct
4681 gacaaaactg aggggccact ggtgattagt gaagacttga acgggttgac attccttcgt
4741 cgcactgtga cccgtgatcc agcaggctgg tttgggaaac tagaacaaag ttccatccta
4801 agacaattgt actggacaaa agggcctaat catgaagatc ctagtgaaac tatgatacca
4861 catgcacaga ggcccgtaca actcatgtca ctactagggg aagcctccct acatggaccc
4921 tcattctaca gtaaagttag caagttggtt atatctgaac ttaaagaggg aggaatggat
4981 ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga tctaagcaca
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc
5101 cgctccatct aatgggtccg cggccaacct cgtcccagag atcaacactg agacccttcc
5161 cctggaacca gtggctggtg cagctattgc tgcggctgtc actggtcaaa acaatataat
5221 tgatccctgg attagaaata attttgtaca agcacccaat ggggagttca ctgtttcacc
5281 taggaactcc ccaggtgaaa tcctcctaaa tttggaatta ggtcccggtt taaatcctta
5341 tttggcacac ttatccagaa tgtacaatgg gtatgctggt ggagttgagg tccaggttct
5401 ccttgcaggg aatgcgttca ccgctggaaa gatcctcttc gctgccgtac caccaaattt
5461 cccagttgag ttcttaagtc ctgcccaaat cactatgctc ccacatttga tagtggatgt
5521 taggacccta gagccaatta tgatacctct ccccgatgtt aggaacaatt tcttccatta
5581 caatcaacag actgatccgc gcattaacct ggtagccatg ctgtacacac cacttagatc
5641 taataactcg ggggacgatg tcttcacagt ctcttgcagg gtcctcacga gaccatcccc
5701 cgattttgat tttatatttc tagtgccacc cacagttgag tcaagaacta agccattctc
5761 tgtcccggtc ttaactgttg aggagatgac caattcaaga ttccccatcc ctttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgttcaaccg caaaacggca ggtgtacgac
5881 tgatggcgtg ctcctaggta ccacccaact gtctcctgtc aacatctgca ccttcagagg
5941 ggatgtcacc cacatcacag gtagtcgtaa ctacacaatg aatctggctt ctctaaattg
6001 gaacagttac gacccaacag aagaaatccc agcccctctg ggaactccag attttgtagg
6061 aaaaatccaa ggcatgctca cccaaaccac aagggcagat ggctcaacac gcggccacaa
6121 agctacagtg tacactggga gcgccgattt ttctccaaaa ttgggtagag ttcaatttca
6181 aactgacaca gaccatgatt ttgaagctca ccaaaacaca aagttcaccc cagtcggtgt
6241 catccaagat ggcagcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagtta
6301 ctcaggcaga aacaccctca acgtgcatct ggccccccct gtagccccca cttttccagg
6361 tgagcaactt cttttcttca gatccaccat gcccggatgc agcgggtacc ccaatatgga
6421 tttggactgt ctactccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga
6541 gtgtaagctt cataagtcag gctatgttac agtggctcac actggccaac atgatttggt
6601 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagttct acacgcttgc
6661 ccccatggga aatggaacgg ggcgtagacg tgcagtataa tggctggagc tttctttgct
6721 ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg
6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tacaacaagc atccttccaa
6841 tttagcagta atctacaaca ggcttccttc caacatgaca aagagatgct ccaggcacaa
6901 attgaggcca ccaaaaagct acaacaggaa atgatgaaag ttaaacaggc agtgctccta
6961 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc catgacaaaa
//