Typing tool
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Typing tool
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Complete norovirus genomes
| MW019959 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5097
ORF2: 5078..6700
ORF3: 6700..7020
LOCUS MW019959 7020 bp RNA linear VRL 29-DEC-2020
DEFINITION Norovirus GII isolate 2049 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION MW019959
VERSION MW019959.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7020)
AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P.
TITLE Next Generation Sequencing of Near-Full Length Genome of Norovirus
GII.4 from Botswana
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7020)
AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P.
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2020) Biosciences and Biotechnology, Botswana
International University of Science and Technology, Khurumela,
Palapye 00, Botswana
COMMENT ##Assembly-Data-START##
Assembly Method :: Genome Detective v. 1.126
Sequencing Technology :: Oxford Nanopore(MinION)
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7020
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2049"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Botswana: Molepolole"
/collection_date="20-Oct-2017"
/note="genotype: GII.4 Sydney[GII.P31]"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QNT54371.1"
/translation="KMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPK
QPPPKEKPPKPPRPPTPELIKEIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPEE
NNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL
AKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRSRPVVVMISGKPGIGKTHLARELA
KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPVLTTFNFDRNKVLAFRQLAAENKYGLMDTMRIGKQLKDVKTMP
DLKQALKNVAIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETASKDGCP
KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIRDERNGK
YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GTEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSSN
LLITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRSIRPDVTGLVLEEGAPEGT
VCSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDC
GCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGGEDRGTYCGAPILGP
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVKKGPSLQQVMRDQLKPFTEPR
GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2622
/gene="ORF1"
/product="p22"
mat_peptide 2623..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6700
/gene="ORF2"
CDS 5078..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QNT54372.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEINQNTKFTPVGVIQDG
STTHRNEPQQWVLPTYSGRKTLNVHLAPAVAPTFPGEQLLFFRSTMPGCSGVPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6700..>7020
/gene="ORF3"
CDS 6700..>7020
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QNT54373.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIDATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTK"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcca acagcaacaa cgacatcgca
61 aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaaacg ggccctcggg
121 gcgcggccta aacagccgcc cccgaaggaa aaaccaccca aacccccgcg accacccaca
181 ccagagttga tcaaagagat ccctcccccc ccacccaatg gggaggatga accagtggtc
241 tcctacagcg ccaaagacgg cgtttccggg ctgcctgagc tcaccactgt cagacaaccg
301 gaagaaaaca acacggcgtt cagtgtcccc ccactcaacc aaagggagaa cagggacgcc
361 aaggagccac taactggaac aattattgaa atgtgggatg gagaaatcta ccattacggc
421 ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccggcggc catcagcctt
481 gccaaggtcg agctaacacc gctctctttg ttctggagac ctgtgtacac cccccagtat
541 ctcatctctc cagacactct taggagacta catggagagt cgttccccta cactgcattt
601 gacaacaatt gctacgcctt ttgttgttgg gtactagacc taaacgactc atggctaagc
661 aggagaatga ttcagagaac aacaggtttc tttaggccat accaggactg gaacaggaaa
721 cccctcccca ctatggatga ttccaaatta aagaaggtag ccaacatatt cttgtgcact
781 ttgtcttcgc tatttaccag gcccattaag gacataatag ggaagctgaa acctctcaac
841 atccttaaca ttctggctac atgtgattgg actttcgcag gcatagtgga gtccttaata
901 ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc
961 cctttactag gtgattatga actgcaagga cctgaggacc ttgcagtaga actggtccca
1021 gtggtgatgg gagggatagg cttggtgcta ggatttacca aagagaaaat tggaaagatg
1081 ctgtcgtccg ccgcatccac cttaagggct tgcaaagacc ttggtgcata cggactagaa
1141 attttgaaat tggtcatgaa atggttcttc ccaaagaaag aggaagcaaa tgagctggcc
1201 atggtgagat ccatcgagga cgcagtactg gacctcgagg caattgaaaa caaccacatg
1261 accgccctgc tcaaggataa agacagcttg gcaacctaca tgagaaccct tgaccttgag
1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ctgacattgt gggtacaatc
1381 aacgctcttc tggcacgaat cgccgctgca cgctccctag tgcatcgggc gaaagaagag
1441 ctctccagca ggtcgaggcc tgtcgttgtg atgatatcgg gaaaaccagg gatagggaaa
1501 actcaccttg ccagggagtt ggccaagaag atcgcagcct ccctcacagg ggaccagcgt
1561 gtgggcctga tcccacgcaa tggcgttgac cactgggacg catacaaggg tgaaagagtt
1621 gtcctatggg acgactatgg gatgagcaac cccatacacg atgccctcag gttgcaggaa
1681 cttgctgaca cttgccccct cacgctaaat tgtgacagga ttgagaacaa aggaaaagtc
1741 tttgatagtg atgccataat tatcaccacc aatctggcca acccagcacc actggattat
1801 gtcaattttg aagcgtgctc gaggcgcatt gatttcctcg tgtacgcgga ggctcctgag
1861 gtggagaagg caaaacgcga cttcccaggc caacctgaca tgtggaagaa cgctttcagt
1921 cctgacttct cacacataaa actggcattg gctccacagg gtggttttga caagaacggc
1981 aacaccccgc atggaaaagg tgttatgaag actctcacca ctggctccct cattgcccga
2041 gcatcaggat tactccatga gagactagat gaatatgaat tacaaggccc agtcctcact
2101 accttcaact ttgatcgcaa caaagtgctt gcctttagac agcttgctgc tgaaaacaag
2161 tatgggctga tggacacaat gagaattgga aaacagctta aggatgtcaa gaccatgcca
2221 gacctcaaac aggcactcaa gaatgttgcg atcaagaagt gccagatagt gtatggtggt
2281 agcacctaca cgcttgaggc cgatggcaag ggtagtgtga aggttgacaa agtgcagagt
2341 gccaccgtgc aaactaacaa tgaactagcc ggcgccctgc accacctgag gtgcgccaga
2401 atcaggtact atgtcaagtg tgtccaggag gcattgtatt ccatcatcca aatcgctggg
2461 gccgcgtttg tcaccacgcg catcgccaag cgcatgaaca tacaaaacct ctggtccaag
2521 ccacaggtgg aagacacaga agagacggcc agcaaagatg gttgcccaaa acccaaagat
2581 gatgaagagt tcgtcgtttc atccgacgac atcaagactg agggcaagaa agggaagaac
2641 aagtccggcc gtggcaagaa gcacacagcc ttctcaagca aagggctcag tgatgaggag
2701 tacgatgagt acaagagaat cagagatgaa aggaatggta agtactccat agaagagtac
2761 cttcaggaca gagacaagta ctatgaggag gtggccattg ccagggcaac tgaagaggac
2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt ttagaccaac aaggaaacaa
2881 cgtaaagagg agagggcctc tttaggcttg gtcacaggca cagagatcag gaagagaaac
2941 ccagaagact tcaaacccaa aggaaagctg tgggctgatg atgacagaag tgttgactac
3001 aacgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt
3061 tccggttggg ggttctgggt ttcatccaac cttctgatca caacaacaca cgttctgcct
3121 aaaggggtta aggaactctt tggagttgaa attaaacaaa tccaagtcca caagtctgga
3181 gagttctgca gattcagatt cccgagatcc attaggccag atgtcacagg acttgtgctg
3241 gaggaaggag ccccagaagg cactgtctgt tccatactca taaaaaggcc tacaggtgag
3301 atgatcccct tggcagtgag gatgggcaca catgcatcca tgaaaataca gggccggacc
3361 gttggtggcc agatgggaat gctcctaaca ggggcgaatg caaagaacat ggatctcggc
3421 actggtcctg gtgactgcgg ttgtccctac atctacaaac gcggcaacga cattgttgtc
3481 gcgggtgttc acaccgcagc agcccgggga ggcaacactg tcatatgtgc cacccaaggg
3541 caggatgggg aggcagtcct tgagggaggt gaggaccgtg gcacctactg tggcgcccca
3601 attctgggcc ctggcaaggc gcccaaactc agcacgaaga ctaagttttg gcgctcgtca
3661 ccagatgcct tgccgcctgg cacgtatgaa cctgcttacc tgggaggcaa ggaccccaga
3721 gtgaaaaaag ggccttcctt gcagcaagtc atgagggacc aattgaaacc atttacagag
3781 cccagaggta aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcattaat
3841 gttcttgagc aaacaattga cccaccccaa aaatggtcat tcgcgcaagc atgcgcatcc
3901 cttgacaaaa ctacctccag cggccaccca caccacatgc ggaaaaacga ttgctggaat
3961 ggggagtcct ttacaggaaa attggcagat caggcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaact ggtgaagact
4081 gacaaaattt atggtaagat caagaagagg ctcctgtggg gctcggacct ggcgaccatg
4141 atacggtgcg cccgggcttt tgggggcctc atggatgaac tcaaggctca ctgtgtcacc
4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccataatctt tgagaagcac
4261 tccagatata aatatcacta tgatgctgat tactccaggt gggactcaac acaacaaagg
4321 gatgtgctag cagcagcact tgaaatcatg gttaagttct ccccagaacc acatctggcc
4381 cagatagttg cagaagacct cctttccccc agcgtgatgg atgtgggtga ttttcaaata
4441 tcaataagtg agggtctccc ctctggggtg ccttgtacct cccagtggaa ttccatcgcc
4501 cactggcttc tcactctttg tgcactctct gaagtcacgg acctgtctcc tgacattatt
4561 caggccaact cccttttctc cttctacggt gatgatgaga ttgtaagcac agacataaag
4621 ttggatccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc
4681 gacaaaactg aaggacccct tgttatatct gaagacctgg atggcctgac tttcctccgg
4741 agaactgtga cccgtgatcc agctggttgg tttggaaaat tggaacaaag ttcaattctc
4801 aggcaaatgt actggactag gggtcccaac catgaagatc catttgaaac aatgatacca
4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact tcatggcccg
4921 gcattttata gcaaaatcag caaactagtc attgcagagt tgaaggaagg tggcatggac
4981 ttttacgtgc ccagacaaga gccaatgttt agatggatga gattctcaga tctgagcacg
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc
5161 tctggagcct gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat
5221 tgacccctgg attagaaaca attttgtaca ggcccctggt ggagaattta cagtatcccc
5281 tagaaacgct ccaggtgaaa tactatggag cgcgccctta ggccctgatt taaaccccta
5341 cctatcccat ttggccagga tgtacaatgg ttacgcaggt ggttttgaag tgcaggtaat
5401 cctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt
5461 tccaactgaa ggcttaagcc ccagccaggt cactatgttc ccccatataa tagtagatgt
5521 taggcaacta gaacctgtgt tgattcccct acccgatgtt aggaataatt tctatcatta
5581 caatcaatca aatgattcca cccttaaatt gatagcaatg ttatatacac cacttagggc
5641 taataatgct ggggacgatg tcttcacagt ctcttgccga gtcctcacaa gaccatcccc
5701 cgattttgat ttcatattct tggtgccgcc cacagttgag tcaagaacta aaccattctc
5761 tgtcccaatt ctaaccgttg aggagatgac caattcaaga ttccccattc ccttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgttcaacca caaaacggca ggtgcacgac
5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aacatctgca ccttcagagg
5941 ggatgtcacc cacattacag gtagtcgaaa ttatacaatg aatttggctt ctcaaaattg
6001 gaacaattat gacccaacag aagaaatccc agcccctcta ggaactccag attttgtagg
6061 gaagattcaa ggtatgctca cccaaaccac aaggacagat ggctcaacac gcggccacaa
6121 agctacagtg tacactggga gcgccgactt tgctccaaaa ttgggtagag ttcaatttga
6181 aactgacaca gaccatgact ttgaaattaa ccaaaacaca aagttcaccc cagtcggtgt
6241 catccaagac ggtagcacca cccaccgaaa tgagccccaa cagtgggtgc tcccaactta
6301 ctcaggcaga aaaacactta atgtgcatct ggcccccgct gtagccccca cttttccggg
6361 tgagcaactt cttttcttca gatctaccat gcccggatgc agcggtgtac ccaacatgga
6421 tttggactgt ctgctccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
6481 acaatctgat gtggctctgc taagatttgt gaatccagat acaggtaggg ttttgtttga
6541 gtgtaagctt cataaatcag gctatgttac agtggctcac actggccaac atgatctggt
6601 tatccccccc aatggttatt ttaggtttga ttcttgggtc aaccagttct acacactcgc
6661 ccccatggga aatggaacgg ggcgtagacg tgtagtataa tggctggagc tttctttgct
6721 ggattggcat ctgatgtcct tggctccgga cttggttccc tcatcaatgc tggggctggg
6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tacaacaagc atccttccag
6841 tttagcagta atttgcaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
6901 attgatgcca ccaaaaagct acaacaggaa atgatgaaag ttaagcaggc aatgctccta
6961 gagggtgggt tttctgagac agatgcagcc cgcggggcaa tcaacgcccc catgacaaaa
//