Typing tool
|
Complete norovirus genomes
MW019620 | GII.4 | ||
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GII.P31 |
ORF1: 1..5097 ORF2: 5078..6700 ORF3: 6700..7020LOCUS MW019620 7020 bp RNA linear VRL 29-OCT-2020 DEFINITION Norovirus GII isolate 1079 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION MW019620 VERSION MW019620.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7020) AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P. TITLE Near complete genome next generation sequence analysis of norovirus GII.4 from Botswana JOURNAL Unpublished REFERENCE 2 (bases 1 to 7020) AUTHORS Makhaola,K., Moyo,S. and Kebaabetswe,L.P. TITLE Direct Submission JOURNAL Submitted (19-SEP-2020) Biosciences and Biotechnology, Botswana International University of Science and Technology, Khurumela, Palapye 00, Botswana COMMENT ##Assembly-Data-START## Assembly Method :: Genome Detective v. 1.126 Sequencing Technology :: Oxford Nanopore(MinION) ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7020 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="1079" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Botswana: Gaborone" /collection_date="16-Oct-2017" /note="genotype: GII.4 Sydney[GII.P31]" gene <1..5097 /gene="ORF1" CDS <1..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QNT38521.1" /translation="KMASNDASAAAAANSNNDIAKSSSDGVFSNMAVTFKRALGARPK QPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVSQPEE TNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL AKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL KPLNILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELA KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS GLLHERLDEYELQGPVLTTFNFDRNKVLAFRQLAAENKYGLMDTMRIGKQLKDVKTMP DLKQALKNVAIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETASKDGCP KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIRDERNGK YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT GTEIRKRNPEDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSSN LLITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRSIRPDVTGLVLEEGAPEGT VCSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDC GCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGGEDRGTYCGAPILGP GKAPKLSAKTKFWRSSPDALPPGTYEPAYLGGKDPRVKKGPSLQQVMRDQLKPFTEPR GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..987 /gene="ORF1" /product="p48" mat_peptide 988..2085 /gene="ORF1" /product="NTPase" mat_peptide 2086..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6700 /gene="ORF2" CDS 5078..6700 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QNT38522.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPGLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASLNWNSYDPTEEIPAPLGTPDFVGKIQGML TQTTRADGSTRGHKATVYTGSADFSPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHQNEPQQWVLPSYSGRNTLNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV" gene 6700..>7020 /gene="ORF3" CDS 6700..>7020 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QNT38523.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKQLQQEMMKVKQAVLLEGGFSETDAARGAIN APMTK" ORIGIN 1 aagatggcgt ctaacgacgc ttccgctgcc gctgctgcca acagcaacaa cgacatcgca 61 aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaaacg ggccctcggg 121 gcgcggccta aacaaccgcc cccgaaggaa ataccaccca ggcccccacg accacccaca 181 ccagaattgg tcaaaaagat cccccctccc ccacccaacg gggaggatga attagtggtt 241 tcttacagcg ccaaagacgg cgtttccgga ttgcctgagc ttaccactgt cagccaaccg 301 gaagaaacca atacggcgtt cagtgttccc ccgctcaatc aaagggagaa tagggacgcc 361 aaggaaccac taactgggac aattattgaa atgtgggatg gagaaatcta ccattacggc 421 ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccagcagc catcagcctt 481 gccaaggtcg agttaacacc actctctttg ttctggagac ctgtgtacac cccccagtac 541 ctcatctctc cagacactct caggagacta catggagaat cattccccta caccgcattt 601 gacaacaatt gctacgcctt ctgctgttgg gtattagacc taaacgactc atggctaagt 661 aggagaatga ttcagagaac aacaggtttc ttcagaccat accaggaatg gaacaggaaa 721 cccctcccca ctatggatga ctctaaattg aagaaggtag ccaacatatt cttgtgcacc 781 ctgtcctcac tattcaccag acccattaag gacataatag gaaaattgaa acctcttaac 841 attctcaata ttctggctac atgtgattgg accttcccag gtatagtgga atccctaata 901 ctcttggcag agctctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc 961 cctttgctag gtgattatga actgcaagga cctgaggacc ttgcagtgga actggtccca 1021 gtagtgatgg gggggatagg tttggtgcta ggattcacca aagagaaaat tggaaaaatg 1081 ctgtcatccg ctgcatccac tttaagagct tgtaaagacc ttggtgcata cggactggaa 1141 attttaaaac tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgagctggct 1201 atggtgagat ccattgagga cgcagtgcta gacctcgaag caattgaaaa caaccacatg 1261 accaccctac tcaaggacaa agatagcttg gcaacctaca tgagaaccct tgaccttgag 1321 gaggagaaag ctagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc 1381 aacgctcttc tggcaagaat cgctgctgca cgctccctag tgcatcgggc gaaagaagag 1441 ctctccagca ggccgagacc tgttgttgtg atgatatcag gaaaaccagg gatagggaaa 1501 acccaccttg ccagggagtt ggccaagaag atcgcagcct ccctcacagg ggaccagcgt 1561 gtgggcctga tcccacgcaa tggcgttgac cactgggacg catacaaggg tgaaagagtt 1621 gtcctatggg acgactatgg gatgagcaac cccatacacg atgccctcag gttgcaggaa 1681 cttgctgaca cttgccccct cacgctaaat tgtgacagga ttgagaacaa aggaaaagtc 1741 tttgatagtg atgccataat tatcaccacc aatctggcca acccagcacc actggattat 1801 gtcaattttg aagcgtgctc gaggcgcatt gatttcctcg tgtacgcgga ggctcctgag 1861 gtggagaagg caaaacgcga cttcccaggc caacctgaca tgtggaagaa cgctttcagt 1921 cctgacttct cacacataaa actggcattg gctccacagg gtggttttga caagaacggc 1981 aacaccccgc atggaaaagg tgttatgaag actctcacca ctggctccct cattgcccga 2041 gcatcaggat tactccatga gagactagat gaatatgaat tacaaggccc agtcctcact 2101 accttcaact ttgaccgcaa caaagtgctt gcctttagac agcttgctgc tgaaaacaag 2161 tatgggctga tggacacaat gagaattgga aaacagctta aggatgtcaa gaccatgcca 2221 gacctcaaac aggcactcaa gaatgttgcg atcaagaagt gccagatagt gtatggtggt 2281 agcacctaca cgcttgaggc cgatggcaag ggtagtgtga aggttgacaa agtgcagagt 2341 gccaccgtgc aaactaacaa tgaactagcc ggcgccctgc accacctgag gtgcgccaga 2401 atcaggtact atgtcaagtg tgtccaggag gcattgtatt ccatcatcca aatcgctggg 2461 gccgcgtttg tcaccacgcg catcgccaag cgcatgaaca tacaaaacct ctggtccaag 2521 ccacaggtgg aagacacaga agagacggcc agcaaagatg gttgcccaaa acccaaagat 2581 gatgaagagt tcgtcgtttc atccgacgac atcaagactg agggcaagaa agggaagaac 2641 aagtccggcc gtggcaagaa gcacacagcc ttctcaagca aagggctcag tgatgaggag 2701 tacgatgagt acaagagaat cagagatgaa aggaatggta agtactccat agaagagtac 2761 cttcaggaca gagacaagta ctatgaggag gtggccattg ccagggcaac tgaagaggac 2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt ttagaccaac aaggaaacaa 2881 cgtaaagagg agagggcctc tttaggcttg gtcacaggca cagagatcag gaagagaaac 2941 ccagaagact tcaaacccaa aggaaagctg tgggctgatg atgacagaag tgttgactac 3001 aacgagagac tcaactttga ggccccacca agcatctggt cgaggatagt caactttggt 3061 tccggttggg ggttctgggt ttcatccaac cttctgatca caacaacaca cgttctgcct 3121 aaaggggtta aggaactctt tggagttgaa attaaacaaa tccaagtcca caagtctgga 3181 gagttctgca gattcagatt cccgagatcc attaggccag atgtcacagg acttgtgctg 3241 gaggaaggag ccccagaagg cactgtctgt tccatactca taaaaaggcc tacaggtgag 3301 atgatcccct tggcagtgag gatgggcaca catgcatcca tgaaaataca gggccggacc 3361 gttggtggcc agatgggaat gctcctaaca ggggcgaatg caaagaacat ggatctcggc 3421 actggtcctg gtgactgcgg ttgtccctac atctacaaac gcggcaacga cattgttgtc 3481 gcgggtgttc acaccgcagc agcccgggga ggcaacactg tcatatgtgc cacccaaggg 3541 caggatgggg aggcagtcct tgagggaggt gaggaccgtg gcacctactg tggcgcccca 3601 attctgggcc ctggcaaggc gcccaaactc agcgcgaaga ctaagttttg gcgctcgtca 3661 ccagatgccc tgccgcctgg cacgtatgaa cctgcttacc tgggaggcaa ggaccccaga 3721 gtgaaaaaag ggccttccct gcagcaagtc atgagggacc aattgaaacc atttacagag 3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcattaat 3841 gttcttgagc aaacaattga cccaccccaa aaatggtcat tcgcgcaagc atgcgcatcc 3901 cttgacaaaa ccacctccag cggccaccca caccacatgc ggaaaaacga ttgctggaat 3961 ggggagtcct ttacaggaaa attggcagat caggcctcca aggccaacct aatgtttgaa 4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaact ggtgaagact 4081 gacaaaattt atggtaagat caagaagagg ctcctgtggg gctcggacct ggcgaccatg 4141 atacggtgcg cccgggcttt tgggggcctc atggatgaac tcaaggctca ctgtgtcacc 4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccataatctt tgagaagcac 4261 tccagatata aatatcacta tgatgctgat tactccaggt gggactcaac acaacaaagg 4321 gatgtgctag cagcagcact agaaatcatg gttaagtttt ctccagaacc acacttggcc 4381 cagatagttg cagaagacct cctttcccct agtgtaatgg atgtgggtga ctttcaaata 4441 tcaataagtg aggggcttcc ctccggggtg ccttgcacct cccagtggaa ctccatcgcc 4501 cactggctcc tcaccctttg tgcactctct gaagtcacgg acctgtctcc tgacatcatc 4561 caggccaact cccttttctc cttctatggt gatgacgaga ttgtgagtac agacataaag 4621 ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaagcc aacccgccct 4681 gacaaaactg agggacccct tgttatctct gaagacctgg atggcctgac attcctccgg 4741 aggactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ctcaattctc 4801 aggcaaatgt actggaccag aggtcccaac catgaagatc catctgagac aatgatacca 4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggccca 4921 gcattttaca gcaaaattag caaattggtc attgcagaat tgaaggaagg tggcatggat 4981 ttttacgtgc ccaggcaaga gccaatgttc agatggatga gattctcaga cctgagcacg 5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc 5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc 5161 tctggagccc gttgttggtg ccgctattgc ggcacctgta gcgggccagc aaaatgtaat 5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtatcccc 5281 tagaaacgct ccaggtgaaa tactatggag cgcgccctta ggccccggtc taaatcccta 5341 cctatcccat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat 5401 tctcgcgggg aacgcgttca ccgctgggaa ggtcatattt gccgcagtcc caccaaattt 5461 cccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtggatgt 5521 taggcaacta gaacctgtgt tgattcccct acccgacgtt aggaacaatt tctatcacta 5581 caatcagtca aatgacccca ctattaagtt gatagcaatg ctgtatacac cacttagggc 5641 taataatgct ggggatgatg tcttcacagt ctcttgccgg gtcctcacga gaccatcccc 5701 cgattttgat tttatatttc tagtgccacc cacagttgag tcaagaacta agccattctc 5761 tgtcccggtc ttaactgttg aggagatgac caattcaaga ttccccatcc ctttggaaaa 5821 gttgttcacg ggtcccagca gtgcctttgt ggttcaacca caaaacggca ggtgtacgac 5881 tgatggcgtg ctcctaggta ccacccaact gtctcctgtc aacatctgca ccttcagagg 5941 ggatgtcacc cacatcacag gtagtcgtaa ctacacaatg aatttggctt ctctaaattg 6001 gaacagttac gacccaacag aagaaatccc agctcctctg ggaactccag attttgtagg 6061 gaaaatccaa ggcatgctca cccaaaccac aagggcagat ggctcaacac gcggccacaa 6121 agctacagtg tacactggga gcgccgattt ttctccaaaa ttgggtagag ttcaatttga 6181 aactgacaca gaccatgatt ttgaagctaa ccaaaacaca aagttcaccc cagtcggtgt 6241 catccaagat ggcagcacca cccaccaaaa tgaaccccaa cagtgggtgc tcccaagtta 6301 ctcaggcaga aacacactta acgtgcatct ggcccccgct gtagccccca cttttccagg 6361 tgagcaactt cttttcttca gatccaccat gcccggatgc agcgggtatc ccaatatgga 6421 tttggactgt ctactccccc aggaatgggt gcagtacttc taccaagagg cagccccagc 6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga 6541 gtgtaagctt cataagtcag gctatgttac agtggctcac actggccaac atgatttggt 6601 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagttct acacgcttgc 6661 ccccatggga aatggaacgg ggcgtagacg tgtggtataa tggctggagc tttctttgct 6721 gggttggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg 6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tacaacaagc atccttccaa 6841 tttagcagta atctacaaca ggcttccttc caacatgaca aagagatgct ccaggcacaa 6901 attgaggcca ccaaacaact acaacaggaa atgatgaaag ttaaacaggc agtgctccta 6961 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc catgacaaaa //