Typing tool
|
Complete norovirus genomes
MW009068 | GII.5 | ||
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GII.P40 |
ORF1: 4..5139 ORF2: 5120..6742 ORF3: 6742..7518LOCUS MW009068 7553 bp RNA linear VRL 21-SEP-2020 DEFINITION Norovirus GII isolate 387-1 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MW009068 VERSION MW009068.1 DBLINK BioProject: PRJNA604000 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7553) AUTHORS Yang,Z., Silva,A.J., Wolfe,J., Hirneisen,K., Ruelle,S., Torres,A., Williams-Hill,D., Kulka,M. and Hellberg,R.S. TITLE Direct Submission JOURNAL Submitted (15-SEP-2020) Molecular Virology Team/Devision of Molecular Biology, OARSA/CFSAN/FDA, 8301 Muirkirk Rd., Laurel, MD 20708, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC GWB v. 11 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7553 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="387-1" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="USA" /collection_date="14-Nov-2018" /note="genotype: GII.P40-GII.5" gene 4..5139 /gene="ORF1" CDS 4..5139 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QNS37110.1" /translation="MKMASNDAATATAGNTSTNSVIHNQDVNSTSSLFANMTVGLKRA LGARPKQPAPRIPSPNREGRHETTPRAPPPNKGGNANIPPIPPPPPNGEDIVIKYTKQ DDAVEGVPTVATVDVPPTHSTAYSVPPLDQREKIEAKEPLTGSILEMWDGEIYHYGLY VEKGLVLGVHKPPAAISFARIELTPLSLYWRTVYTPPYLIAPETLRKLHGESFPYTAF DNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLL CGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGIVEAFILLAELFGVFWTPPDIS TFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREI GNYGIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLAT FLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVI MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC SRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPH GKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHNRVAAFRRLAADNKYG LMETIKVGNKLKSVKTLEQLKDALKDISIMPCRIVYNSMAYDLDSNGSGRVSVKKVVD HKIQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRLNVSSIW ARPEKQVEATEEPPSPPTEDWTITPANAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEY DEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRVFRPTRK QRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIV NFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQVHRSGEFCKMRFPKAIRPDV SGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSN AKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGRD NHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQ VMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYTQACASLDKTTSS GHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYE KIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKY KYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKIT INEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEIVSTDI KLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLDGLTFLRRDVCRDPAGWYGKLDQS SIMRQLFWTKGPNHEDPNETMIPHSQRPIQLMSLLGEAALHGPVFYKKVSKLVITELK EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide 4..1044 /gene="ORF1" /product="p48" mat_peptide 1045..2142 /gene="ORF1" /product="NTPase" mat_peptide 2143..2679 /gene="ORF1" /product="p22" mat_peptide 2680..3063 /gene="ORF1" /product="VPg" mat_peptide 3064..3606 /gene="ORF1" /product="Pro" mat_peptide 3607..5136 /gene="ORF1" /product="RdRp" gene 5120..6742 /gene="ORF2" CDS 5120..6742 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QNS37108.1" /translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKVIFAAVPPYFPVENLSPSQITMFPHVVIDVRTLEPVLLPMPD VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT QLQACNICSIRGKVTGQVPNEQHMWNLEVTNLNGTQFDPTDDVPAPLGVPDFAGEVFG VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ" gene 6742..7518 /gene="ORF3" CDS 6742..7518 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QNS37109.1" /translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNSTNSTQS TVVSTSSVSPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgctgcc actgcgaccg ctggcaatac cagcacaaac 61 agtgtgattc acaaccaaga tgtaaattct acatctagcc tctttgccaa catgactgtt 121 ggcctgaaga gggccctggg ggcgagacca aagcaacccg ctcccaggat tccttccccc 181 aacagggagg gaagacatga aaccacccct agagctcccc ctccgaacaa ggggggtaat 241 gctaacatcc caccaatacc acccccaccg cccaacgggg aggacatagt catcaagtac 301 accaagcaag atgacgcggt tgaaggggtg cccaccgtcg ccacggttga tgttcccccc 361 acacacagca ccgcttacag tgtccccccc ctggatcaga gggaaaagat tgaagcgaag 421 gagcccttga caggttcgat acttgagatg tgggacggtg agatctacca ctatggtctc 481 tacgtggaga agggcttggt tcttggtgtg cacaaacctc cagctgccat aagctttgca 541 cgcatagaac tcacccccct ctccctatac tggagaacag tctacactcc accttacctg 601 atagccccag aaaccctaag gaagctccac ggggagtcat tcccgtatac agcctttgac 661 aacaattgtt actccttctg ctgctgggtc ctggacctga acgattcttg gctcaacaga 721 aaatttgtgt caaggacaac gggtttctac agaccctacc aagagtggaa tagaaagcct 781 ttgccaacca tggatgaagg aaagctcaag aaagtggcca atgtgcttct atgtggtctc 841 tctgggcttt tcactaggcc catcaaggac ctcataggga agttgaggcc actaaacata 901 ctaaacatca tcaccaattg cgactggacc ttccccggaa ttgtggaggc tttcatactg 961 cttgcagagc tctttggagt tttctggaca ccaccagaca tttccacctt catagcttca 1021 cttctgggtg actatgaaat gcagggccct gaggatatcg cggttgaagt cgtaccggtg 1081 atcctcggcg gcataggtat ggtacttgga ttcaccaaag aaagaattgg ccggttgctg 1141 agctctgccg cttcctcact tagagcatgc agggagatcg gcaactatgg gatagaggtg 1201 gtgaagctgg tgatgaaatg gtttttcccc accaaagatg agacaaatga gatggatatg 1261 gtgagggcaa tagaggatgc tgttcttgac tttgaagcca tacagaacaa ccacatgaca 1321 gcattgctta aagacaaaaa cagccttgca accttcctca gggagctaga tatggaagag 1381 gaaaaggcgc ggaagctatc aacaaaatct gcgtccccag atattatcgg caccataaat 1441 gcccttctag ccagaattgc cgctgctagg tccctagtcc acaaggccaa ggaagaaatg 1501 tcatctagga tgcgtcctgt tgtcatcatg atctccggcc gacccgggat agggaagacg 1561 catctggccc gcgacctggc taagaagatg gcggcgaccc tctcaggtga tcagagagtg 1621 gggctcgtgc cgaggaatgg tgttgaccat tgggacgcat ataaaggaga gaggatcgtg 1681 ctctgggacg attatggaat gagcaaccct gtgactgatg cgctgcggct ccaggagctt 1741 gccgacacat gccccctaac gctcaactgt gatagaatag aaaacaaggg aaaagtgttt 1801 gacagtgaca ctataatcat caccactaat ttggccaatc ctgctcctct agattatgtc 1861 aactttgaag cttgctcccg ccgaatcgac ttccttgtct atgcagactc cccctcggtg 1921 gacaaggcga agagagactt ccctggtcaa ccagacatgt ggaaggatgc ctttaaaccg 1981 gacttttcac acataaaact tcagttggca ccacagggag gctttgataa gaacgggaac 2041 acccctcatg ggaaaggtgt catgaaaacg ctaaccacac actcactcat tgcccgcgcc 2101 acgggcctcc tacatgaaag attggatgag tttgacctgc agggtcccga gttgcccgtg 2161 tacaattttg accacaacag ggtggctgct ttcaggagac tggcagctga caacaagtat 2221 gggcttatgg aaaccataaa ggtgggcaac aaattgaaaa gcgtcaagac tctagaacaa 2281 ctcaaggacg ctctaaaaga cataagtatc atgccttgca gaatagtcta caactcgatg 2341 gcttacgatc tcgattcgaa cggatcaggg agagtcagtg tcaaaaaggt tgtagaccac 2401 aagatccaga ccaacaacga gctcaattcc gccctcaaca atctgcgcgg tgccagagtg 2461 agatactatg ttaaatgtgt tcaagagatg gtgtattccc tccttcaaat tgctggcgca 2521 gccttcgtca cttcaagaat gacacggagg ttgaacgtca gcagcatttg ggccagacca 2581 gaaaaacagg tggaggccac tgaggaaccc ccatctcccc cgactgagga ctggactata 2641 accccagcaa atgcagtcca ggaaggtaaa aagggcaaga acaagagcgg caggggcaag 2701 aaacataccg ccttctccag taaaggccta agtgatgagg agtatgatga gtataagaga 2761 atcagagaag agagacaagg aaaatactcc atagaagaat accttcagga tagggaccgg 2821 tattatgaag aattggccat agccaaggca acagaggaga acttctgtga ggaggaagaa 2881 ataaaaatca gacagagggt cttccgtccg accaggaaac aacgcaagga agagagggca 2941 actctaggac tggtcacagg cagtgaaata aggaagagga acccagatga tttcaagcca 3001 agaggaaaat tgtgggctga tgatgaccgc agtgtaaatt acaatgagaa aatagatttt 3061 gaagcgcctc ccagcctttg gtctcgaata gtcaacttcg ggtcaggttg gggtttttgg 3121 gtttcttcca acttgctcat cacatcaaca catgtcatcc ccccgaacat gactgaggcc 3181 ttcggtgtac caataagcca gatacaagta cataggagtg gagagttctg taaaatgagg 3241 ttccccaaag ctataagacc tgatgtctca ggcatgatcc ttgaggaagg agctcccgag 3301 ggaacggtgg tgaccatact gatcaagagg accaccggtg agctcatgcc actggccgcc 3361 cgaatgggca cccacgccac catgaaaatt caagggaaaa tgcttggagg ccaaatgggc 3421 atgctcctca cggggtccaa cgctaagaac atggacctcg gtaccatccc tggagactgt 3481 ggttgtccct atgtttacaa gaggggtaac gactgggtgg ttataggggt gcacaccgca 3541 gccgccagag gtggcaacac tgtgatttgt gccactcagg gtccagacgg tgaggccacg 3601 ctcgagggga gagacaacca cgggacctac tgtggggcac caatacttgg accaggaagt 3661 gcaccaaaac tcagcactaa gactaaattc tggaggtcat ccaacgcccc acttccgcct 3721 ggcacttatg agcccgctta cctaggcgga aaagacccaa gagtcaaggg gggaccatca 3781 ctacagcaag tcatgaggga acaactcaaa cctttcacag ccccccgagg gaagccccca 3841 cgaccggcga tcctggaggc tgctaaggaa accatctgta atgtacttga acagatcatt 3901 gacccacccc aaaaatggtc ttatactcag gcctgtgcct ctctagacaa aacaacatcc 3961 agtggccatc cccaccacat gaaaaagaat gacaactgga acggagagtc ctttaccggt 4021 gtgttggctg accaagcttc caaggcaaat ctcatgtttg aacaagggaa acacatgcaa 4081 cctgtgtata ctgccgccct caaagacgag ctcgtcaaga ctagcaagat ctatgagaaa 4141 attaagaaga ggctcctatg gggttcagat ctgggcacaa tgatccgctg tgccagggct 4201 tttggaggcc tcatggatga gatgaaagca aattgtgtaa acttaccaat cagagttggc 4261 atgaacatga atgaagatgg acccatcatt ttcgagaaac attcaaagta taagtaccat 4321 tatgatgctg attactctag gtgggattca acccaacaga gacatatctt gggggctgcc 4381 cttgagataa tggttaggtt ctcagctgaa cctgaattgg cccaaattgt atctgaagat 4441 ctcctagccc ccagcgtggt ggacgttggt gacttcaaga tcaccataaa tgaaggttta 4501 ccctctggag tgccgtgcac atcacaatgg aactcaattt cccactggct aataacacta 4561 tgtgccatat cagaaatttc agggctgtcg ccagatgtgg tacaaacaaa ctcctgtttc 4621 tccttctatg gggatgatga gatagtcagc actgacatta agttagatcc catgaaatta 4681 actaacaagt tgaaggagta tggactgatc ccaacaagac cagacaagac agaggggcca 4741 ctcataatca aagaaaacct tgatggcttg acctttctga ggagggatgt gtgtcgggac 4801 ccagctggtt ggtatggaaa gcttgatcaa tcctcaatta tgagacaatt gttttggacc 4861 aaggggccca accatgaaga tcccaatgag acaatgattc cacactccca gaggcccata 4921 caactaatgt cattgctggg ggaggcagca ttacacggac cagttttcta caagaaagtc 4981 agtaaattag ttatcactga gctcaaagag ggtggaatgg atttttacgt gccaaggcaa 5041 gaacctatgt ttaggtggat gagattctct gacctcagca cttgggaggg cgatcgcaat 5101 cttgctcccg aaggtgtgaa tgaagatggc gtcgaatgac gctactccat caaatgatgg 5161 tgctgccggc ctcgtgccag aaagtaacaa tgaggcaatg gctctggaac ccgtggtggg 5221 ggcgtcttta gccgcccctg tcactggcca aactaatata atagacccct ggattagaac 5281 taattttgtc caagccccta atggtgaatt cacagtttcc cctagaaatt cccctggaga 5341 gatattggtc aatttggagt tgggtccaga actgaaccct tatctggcac atttagctag 5401 gatgtacaat ggttatgcgg gtggtatgga ggtgcaagtg atgctcgcgg ggaacgcgtt 5461 cactgctggc aaggtcatct ttgccgccgt gccaccttac tttccagtgg aaaatcttag 5521 cccttctcaa ataacaatgt tcccacatgt ggttatcgat gttagaacct tagaacctgt 5581 gctgctccca atgcctgatg tcagaagcac ccttttccac tttaatcaaa aggatgaacc 5641 taagatgaga cttgttgcca tgctctacac ccctcttcgt tctaatggct ctggtgacga 5701 tgttttcact gtttcatgta ggattcttac taggccctct cctgaattcg atttcacata 5761 cttggtgcca ccaacagtgg agtcaaagac caagccattt acactacctg tgctgacatt 5821 gggagaattg tccaattcta gattccctct ctctattgat gaaatggtca ccagccctaa 5881 tgagtccata gttgttcagc cacagaatgg tagggtcaca ctagatgggg agctgttagg 5941 cacaacccaa ctgcaagcat gtaacatttg ttccataagg gggaaagtga caggacaggt 6001 ccctaatgaa caacacatgt ggaacctgga ggttacaaac ctaaatggga cgcaatttga 6061 ccctacagat gatgtcccag cccctcttgg tgtgcccgac tttgcaggtg aggtctttgg 6121 tgtactcagt cagagaaata gaggtgaaag caatccagca aacagggctc atgatgctgt 6181 tgtggccacc tacagtgata aatacacccc taaattgggc ttagtgcaaa ttgggacttg 6241 gaacaccaac gatgttgaaa accagccaac aaaattcacc ccaattggtt tgaatgaggt 6301 cgccaatggc catcgatttg aacagtggac cttgcctagg tattctggtg ccctgacact 6361 aaatatgaac ttagctcctg ctgtggcccc gctctttcct ggagagcgtc ttcttttctt 6421 ccgctcttac gtcccattaa aaggtggatt tggaaaccct gctatagatt gtctagtgcc 6481 tcaggagtgg gtccaacatt tctatcagga atctgcccca tctctggggg atgtggcctt 6541 agtcaggtac gtcaacccag acaccgggcg cgtccttttt gaggccaaac tccataaagg 6601 tgggttcctg accgtgtcaa gcactagcac agggcctgtt gtggttccag ccaatggtta 6661 ttttagattt gattcttggg ttaatcaatt ttactctctt gcccccatgg gaactgggaa 6721 tgggcgcaga aggtttcagt aatggcagga gctttcatag caggtttagc aggtgatgtg 6781 cttagtaatg gcctcggttc gctgattaat gccggagcca atgctatcaa tcaaagagca 6841 gaatttgatt tcaataggca attgcagcaa aattcattta atcatgataa ggagatgtta 6901 aatgcccaaa ttcaagcaac aaaacagttg caggctgata tgatagcaat caaacaggga 6961 gttctagctg ctgggggttt ctcaccaact gatgcagcca gaggagctgt caatgcaccc 7021 atgacccaag cattagattg gagtggcact aggtattggg cccctggttc aatgaagacc 7081 accagctatt ctggaaagtt tgtgtccatg aatcctgtta ggcaggttga attcccgcag 7141 cccaaaaaga gtgcggccat accatcaagt gccagctctg tgtcttctgg taggactaat 7201 tccacaaatt ctacccaatc aactgttgtt agcacttcct cagtatcacc ttctaggggt 7261 tcttctgctc cttctactct atcaagggct acaaccagaa cttccaattg ggttgaggaa 7321 caaaacagga atttggaacc ctatatgagg ggtgccctcc aaacaacatt tgtcacccct 7381 ccttccagcc gggcatctag caacggtaca gtctcaactg taccaaaagg tgttttggac 7441 tcctggacac ctgcgtttaa cacccgcagg caaccgcttt tcgcttacct tcgcaagaag 7501 ggggagtcac aagtttagtg aaaagatgat tagtgattga taattgatct ttt //