Typing tool
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Typing tool
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Complete norovirus genomes
| MT707683 | GIX.1 | |
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| GII.P15 |
ORF1: 1..5091
ORF2: 5072..6739
ORF3: 6739..7470
LOCUS MT707683 7594 bp RNA linear VRL 18-NOV-2020
DEFINITION Norovirus GII isolate KMN1 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MT707683 MT645709
VERSION MT707683.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7594)
AUTHORS Chen,Y., Wu,Q., Yang,Z., Fang,Q., Hou,D., Zheng,H., Guo,L., Li,H.
and Liu,L.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2020) Respiratory virus Laboratory, Chinese
Academy of Medical Science, alternating current road 935, Kunming,
Yunnan 650221, China
COMMENT On Nov 18, 2020 this sequence version replaced MT645709.1.
##Assembly-Data-START##
Assembly Method :: SOAPdenovo v. 2.0 or MAY-2020
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7594
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KMN1"
/isolation_source="vomitus"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="20-Oct-2017"
/note="genotype: GII"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QLD28946.1"
/translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL
GAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLSTVE
NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA
ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN
DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL
GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP
EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR
QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI
EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA
RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK
TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTALLR
LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPSSE
VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS
IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVTGS
EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL
ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC
SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC
PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK
APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK
PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE
SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM
VRCARAFGGLMDSMKESCVVLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ
QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW
NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG
LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE
NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF
RWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide <1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6739
/gene="ORF2"
CDS 5072..6739
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QLD28947.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6739..7470
/gene="ORF3"
CDS 6739..7470
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QLD28948.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV
PSSISSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa tgacagctat
61 agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt
121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg
181 ccgatcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc aaacggtgag
241 gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga tttgtccacc
301 gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga gagggagcac
361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctat
421 cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc accagcagca
481 attagcctag caacgataga tttgacacct atatcgttgt actggagacc ggtttacaca
541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa gtttccctac
601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgattca
661 tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta ccaatcctgg
721 aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc aaatgcagtt
781 ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg taaattgaaa
841 ccactcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg tgtggtggag
901 acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga tgtctccaac
961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag
1021 cttgttcctg ttatcatggg aggcattggt atggtgttgg gattcacagc tgagaagata
1081 gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct tggcaattac
1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc
1201 gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac
1261 aaccacctca caacactgct caaagacaaa gatagcttga gtgcctacat gaagacctta
1321 gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc cgacattgtt
1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc
1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aagacccggc
1501 atcgggaaga catatctggc tagacagctt gccaaatcga ttgcaaacag catgagtggt
1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ttataggggt
1621 gaaagagttg tcctatggga tgactatggc atggggaata caatcaaaga tgccctgacc
1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaaa
1741 gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa ccccgctccc
1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag
1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgat
1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggttttgac
1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct acactcactc
2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact acagggtgat
2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct
2161 gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa
2221 accctggaag atctgaagtc tgctctcaag ggagtcaaat tcaaagagtg tgaaataatt
2281 tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc agtttccaag
2341 atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct gagattgagg
2401 caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac cctaatacag
2461 gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg ggaccgctgg
2521 atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt ggccacaggg
2581 agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa aaataagaaa
2641 ggaaggggaa ggaaacacac agctttctct agtaagggtc ttagtgatga agagtatgat
2701 gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga atacctccag
2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga ggacttctgt
2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcagaggaag
2881 gaggagcggg gcatcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat
2941 gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa
3001 aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct cggcactggc
3061 tggggtttct gggtctcctc caacctcctc ataacaacaa cacacgtcct gccaaaagga
3121 ttgaaggagc tgttcggggt tgacatcaaa caagtccaga tacacaagtc aggtgagttc
3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa
3241 ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg agagatgata
3301 ccacttgcag tgaggatggg tacccacgct tccatgaaaa tccagggtag aacggttggt
3361 ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt gggcacgaac
3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg
3481 gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca aggagctgac
3541 ggagaggccg tcctcgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt
3601 ggacttggga aggcccccaa actcagtacc aagacaaagt tctggcgatc ctcccctgat
3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc aagggttgag
3721 aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac cgaacccaga
3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg
3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac
3901 aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg gaatggtgaa
3961 tctttcaccg gccctttggc cgaccaagct tcaaaagcaa acctaatgta tgaacaggca
4021 aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa gactgataag
4081 atttacaaga aaataaagaa gaggctgctg tggggttctg atctgggtac catggtcagg
4141 tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt ggtgttaccc
4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa
4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc
4321 ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct ggcacaagtg
4381 gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt ggtgtcagtc
4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg
4501 atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct
4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttagac
4621 ccagcaaagc taaccttaaa actcagggaa tacgggttgg tccccaccag accagacaaa
4681 actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct acgcagacac
4741 atcacacgag atcctgctgg atggtttgga aaattagatc aggattcaat cttaaggcaa
4801 ctctactgga ctagaggacc caaccatgag aacccctacg aatgcatggt cccacactca
4861 cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc
4921 tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct ggaattttac
4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag
5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt
5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt
5161 agagcccgtc gcaggagttc agctggctgc tcccgtagca gggcaaagta atataattga
5221 cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg tttcccctcg
5281 gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa atccctatct
5341 caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct
5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc
5461 aacccatggc atttctgcag cacaggctac tatgttacca catgtgattg tggatgtcag
5521 gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg
5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc ctctccgtgc
5641 caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa ggccctcacc
5701 agattttgat tttattttct tagtcccccc ctctgtagag agtaagctga aacagttcac
5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gtatcacaca
5821 actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca ggtgtctgct
5881 tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca gtttcagagg
5941 agtcacctca actgaagttg atgcaactga cagttccaga gtggcagggt cgcatagaat
6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc ccaaccctgc
6061 ccctgttggc actccagact ttcaagcagc catatttggc accctcagtc aaagaaacac
6121 tggcggggct gggcagaatt ccaacagagc ccacttcgca tatttttaca ctagaaaccc
6181 cacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg attttcagaa
6241 tcgccaacct actaaattct ccccttctgg tgtgtttgat gatgattctt ctgaaccttt
6301 taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg ctgggaagct
6361 agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta gagggaatat
6421 tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc aggaatggat
6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcggccctgc tgcgttacta
6541 caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg gattcatcac
6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga
6661 gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg gccgcagggg
6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc
6781 ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca aaaggttgaa
6841 tatgattaca ataggcactt gcagtcagct tcttttcaac atgataagga tatgctcaac
6901 tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa ggaaggcatg
6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg
7021 acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat gaaaaccacg
7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgtgcac
7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ttctctctcc
7201 acatcatcca cccgtgttcc atcatccata tcctcatcta gtagtgcttc tagaacaagg
7261 gactgggtgt ctgaacagca aagactcagc ccttttatga gaggctctct tcacactgca
7321 tatgtgactc ctccctcaag ctctgcctct tcagtaagtt ctgtttctac agtcccacac
7381 tatgttttag attcatggac cccttctttt aacactaaac atttgccttt gtttgctcat
7441 gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat tgatttgttt
7501 tgtaattagt gaaatgttga ttctttctaa ttcggcattt aaaaaaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//