Typing tool
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Typing tool
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Complete norovirus genomes
| MT703831 | GIX.1 | |
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| GII.P15 |
ORF1: 4..5100
ORF2: 5081..6748
ORF3: 6748..7479
LOCUS MT703831 7547 bp RNA linear VRL 08-JUL-2020
DEFINITION Norovirus GIX isolate SD20191568 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MT703831
VERSION MT703831.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7547)
AUTHORS Fu,Z., Liu,L., Kong,X., Han,Y., Jin,M., Pang,L., Zhang,Q. and
Duan,Z.
TITLE The complete genomic sequence analysis of the Shandong Norovirus
strain SD20191568
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7547)
AUTHORS Fu,Z., Liu,L., Kong,X., Han,Y., Jin,M., Pang,L., Zhang,Q. and
Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2020) Institute of Pathogenic Microorganisms,
Shandong Center for Disease Control and Prevention, No. 16992,
Jingshi Road, Jinan 250014, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/isolate="SD20191568"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="China: Jinan"
/collection_date="07-Jun-2019"
/note="genotype: GIX.1"
gene 4..5100
/gene="ORF1"
CDS 4..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QLC45976.1"
/translation="MKMASNDVVTALGSQKATNDSYSTSPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHRPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLFASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPAVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSAKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 4..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6748
/gene="ORF2"
CDS 5081..6748
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QLC45977.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6748..7479
/gene="ORF3"
CDS 6748..7479
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QLC45978.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPVHQTGSATGSISSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSASTVPHHVLD
SWTPSFNTKHLPLFAHVGKRGQSQV"
ORIGIN
1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat
61 gacagctata gcacatctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa
121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcaca
181 caaaaaccgc cggtcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca
241 aacggtgagg atgcagtcca cttcgtaaag gaaacggaga ccatcaaggg actgccagat
301 ttgtccaccg tggagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag
361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt
421 gagttctacc actactccat atacgtggac aatggcaagg cccttggagt tcacagacca
481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg
541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag
601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctt
661 aatgactcgt ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac
721 caatcctgga acaggaagcc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg
781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc
841 aaattaaaac ccctcaatct cctgaacttg tttgcatcat gtgactggac cttttctggc
901 gtggtggaaa cagtcatcct tgctgcagag ctcttcaatg tcttttggac tccacctgat
961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatctt
1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct
1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt
1141 ggcaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag
1201 gaaaaggccg agatggaaac cctgagggcc atcgaggacg ctgtccttga catggaggca
1261 attggaaaca accacctcac aacgctgctc aaagacaaag atagcttgag cgcctacatg
1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcacct
1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta
1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ctgtcgttat ggtgtctgga
1501 agacccggca tcgggaagac atatctagct agacagcttg ccaaatcgat tgcgaacagc
1561 atgagtggtg atcagagagt gggactcgtt ccccgcaatg gggtcgacca ctgggatgcc
1621 tataggggtg aaagagttgt cctatgggat gactacggca tgggaaatac tatcaaagat
1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc
1741 gaaaacaagg ggaagatgtt tgacagcgat gtcatcataa taacaaccaa tcttgtcaac
1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt
1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg
1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt
1981 ggttttgaca agaacggaaa caccccccac gggaagggca ccatgaaaac tctcacgcta
2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg
2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa
2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag
2221 aacgtgaaaa ccctggaaga tctgaaatct gccctaaagg gagttaaatt caaagagtgt
2281 gaaataattt acaagggggc caagtataga gtcgcctcgg atggctgtgg cagtgtctca
2341 gtttccaaga tcaaggatgt tgtgtcgcag acatccaatg aagtgcacac agcgctcctg
2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc
2461 ctaatacagg ttgctggagc ctcatttgtg gtacatagga tctcaaagag attttcatgg
2521 gaccgctgga tcaaacccag tgacagccct caggaggaag aacaacccag cagtgaggtg
2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggtaa aaagggtaaa
2641 aacaagaagg gaaggggaag gaaacacacg gccttctcta gtaagggtct tagtgatgaa
2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa
2761 tacctccagg accgtgacag attttatgag gaagtggcag ttgcaagggc aacggaagag
2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag
2881 cagaggaagg aggagcgtgg cgtcctaggg ctggtcactg gttcagaaat caggaagaga
2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac
3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc
3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg
3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaaac aagtccagat acacaagtca
3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc
3241 cttgaagaag gggcccctga aggtacggtg tgttctatcc ttgtcaaaag accgactgga
3301 gagatgattc cacttgcagt gaggatgggc acccacgctt ctatgaaaat ccagggtaga
3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg
3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg
3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa
3541 ggagctgacg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc
3601 ccaatacttg gactcgggaa ggctcccaaa ctcagtgcca agacaaagtt ctggcgatcc
3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat atctaggtgg aaaggaccca
3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacagcttaa accttttacc
3781 gaaccaagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg
3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catattccca agcatgtgct
3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg
3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat
4021 gaacaggcaa aacacatgag tcccgtttac actgcggccc tcaaagatga actggtcaag
4081 actgataaga tctacaagaa aataaagaag aggctgctgt ggggctctga cctgggtacc
4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg
4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa
4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa
4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg
4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg
4441 gtgtcagttc aagaaggtct tccctcaggt gttccgtgca cttcccaatg gaactccata
4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg
4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc
4621 aacttggacc cagcaaagtt aaccttaaaa ctcagggaat atggattggt ccccaccaga
4681 ccagacaaaa ctgaaggccc attagtcatc acagaggatc tccatggact gaccttccta
4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc
4801 ttaaggcaac tctattggac tagagggccc aaccatgaaa acccctatga gtgcatggtc
4861 ccacactcac agcgcgcaac tcagttaatg gcgctgttgg gtgaggcatc attgcacggt
4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg agattaagag tggtggtctg
4981 gaattttacg tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc
5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga
5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt
5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa
5221 tataattgac ccctggatta gaatgaactt tgtgcaagcc ccggccggtg agttcactgt
5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa
5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga
5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc
5461 cagcttccca acccatggca tttctgcagc acaggcaacc atgttaccac atgtgattgt
5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt
5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc
5641 tctccgtgcc aacggtgcgg gtgatgatgt cttcactgtc tcatgtcgtg tgctaacaag
5701 gccctcacca gattttgatt ttattttctt ggtcccccct tctgtagaga gtaagttgaa
5761 gcagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg
5821 catcacacaa ctctacacca gtccaaatac caatttggtt gtccagttcc aaaatggcag
5881 gtgtctgctt gatggcacac tcctcggcac cacccctgtc agagctgctg acatctgcag
5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tggcagggtc
6001 ccatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc
6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca
6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctacac
6181 tagaaacccc acatttgcac caggtatagg gacagttgtg ttttcttttg atactactga
6241 tttccaaaat cgccaaccca ctaaattctc tccttctggt gtgtttgatg atgattcttc
6301 tgaacctttt aatcaatttt ctctaccata ttataatgga tcactcggtg cagtggatgc
6361 tgggaaacta gctccgcctg tagcacccaa ttatccaggt gagcagattc tctattttag
6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca
6481 ggagtggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct
6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg
6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt
6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg
6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct
6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa
6841 aaggttgaat atgattacaa taggcatttg caatcagctt ctttccaaca tgataaggat
6901 atgctcaact cacaagtgga agccacaaag cacttacaaa gggagatgat ggccatcaag
6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac
7021 gcccctatga cacaaatttt ggattggaat ggcaccagat actgggcccc aggtgcaatg
7081 aaaaccacgg cttactcagg ccgttttgtc agccaatcca ctcacaggcc cattcccaat
7141 gttgttcaca agagtgatgg acccgtacac caaactgggt cagccacagg gtccatttct
7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct
7261 agaacaaggg actgggtgtc tgaacagcaa aggctcagcc ctttcatgag aggctctctt
7321 cacactgcat atgtgactcc tccctcaagc tctgcctcct cagtaagctc tgcttctaca
7381 gtcccacatc atgttttaga ttcatggacc ccttctttta acactaaaca tctacctttg
7441 tttgctcatg ttgggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt
7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcgacat
//