Typing tool
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Typing tool
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Complete norovirus genomes
| MT526277 | GI.3 | |
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| GI.P13 |
ORF1: 1..5399
ORF2: 5383..7017
ORF3: 7017..7664
LOCUS MT526277 7680 bp RNA linear VRL 02-JUN-2020
DEFINITION Norovirus GI isolate 329-2 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MT526277
VERSION MT526277.1
DBLINK BioProject: PRJNA604000
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7680)
AUTHORS Yang,Z.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2020) Molecular Virology Team/Devision of
Molecular Biology, OARSA/CFSAN/FDA, 8301 Muirkirk Rd., Laurel, MD
20708, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC GWB v. 11
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7680
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="329-2"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="26-May-2014"
/note="genotype: GI.3[P13]"
gene <1..5399
/gene="ORF1"
CDS <1..5399
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QKE42659.1"
/translation="ASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGETTT
KIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQES
TARAWCDLSKEEKEEIIRNNERLFDAGGVTPSTLPSTFERTDSNSVTDEQQPVTWSSN
GGVDLGINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAIYIG
QGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYASI
TNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVLS
AINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDISS
FIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG
QYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYMNV
LDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMMCG
PPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKIT
EDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGKGV
MKTTTLNRLLIQATALAMERQDEFQFQGAVYNFDEDRVAAFTNLARANGLGLISMATL
GKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQHQA
ISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPILE
GKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKNKG
KTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTPPK
NDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEI
FGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVVCG
VHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFWKS
NPQPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVET
VTNAIEQVMDTPVAWSYGDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAHA
NSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCAL
SEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDGPI
IVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQRK
VQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTG
DRDLLPDYVNDDGV"
mat_peptide <1..1214
/gene="ORF1"
/product="p48"
mat_peptide 1215..2303
/gene="ORF1"
/product="NTPase"
mat_peptide 2304..2903
/gene="ORF1"
/product="p22"
mat_peptide 2904..3323
/gene="ORF1"
/product="VPg"
mat_peptide 3324..3866
/gene="ORF1"
/product="Pro"
mat_peptide 3867..5396
/gene="ORF1"
/product="RdRp"
gene 5383..7017
/gene="ORF2"
CDS 5383..7017
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QKE42660.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
VNASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7017..7664
/gene="ORF3"
CDS 7017..7664
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QKE42661.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 tggcgtctaa cgacgctatt gccgttgctg atgtcagcaa taacaatgct aacaccaaca
61 atgaaaacat aggatctcgc cttatggcaa agatccgtgg gcgtataggc ccacaacgtg
121 gtgaaacaac cacaaagatc aaagatgcca acatggcgct cgacctttta cgccggtcac
181 aaacaccatc tccatgtcgg caaactaatg acagtgcccc caaggctcaa agggaccgtc
241 ccccgcggac cgcttcagag gtaaaaaggg cgctggggtg ggatgctgaa ccagaacacc
301 aagaaagcac ggctagggca tggtgtgacc tctcaaaaga ggagaaggaa gagataatac
361 gtaacaatga gaggcttttt gatgctggag gtgtcactcc atcgaccctg cccagcacat
421 ttgagaggac tgattcaaac agtgtcactg acgagcaaca acctgtgaca tggtcttcta
481 atggaggggt tgaccttggc atcaatgaat tgaccacagt tcgtggcccg ttttggaata
541 tgtgccccct cccaccacta gaagcccgca atagtggccc tgctaaggaa ccccttatag
601 gtgacatggt cgagttctat gaaggacaca tattccatta tgccatttac attggacagg
661 gcaagactat tggagtccac tcaccacagg ccgctttttc catacccaga ataaccatcc
721 acccactggt ggcctggtgg cgtgtgtgtt acatccccac tagccaacaa cgccttacct
781 acgaacagct taaggagttg gagaatgaac catggcccta tgcctcaatc accaacaact
841 gttatgagtt ttgctgtaaa gtgatggcac ttgatgatac ctggctccaa agaagactgg
901 ttactagtgg aaaatttaac caccccacac aggactggtc acaggacacc ccagatttcc
961 atcaggattc gaagcttgaa atggtaaggg acgctgtctt gtcggccatc aacggtcttg
1021 tatcacaacc cttcaagaac atcctgtcta aaattaaacc attaaatgtg cttaatcttt
1081 tatcaaactg tgattggacc ttcatgggcg tcgtggaact ggtagtgctc ctggcagaac
1141 tgtttgatgt gttctggacc ccaccagaca tttcaagctt cattgcatct ttactacctg
1201 attttcatct acaaggccca gaagacctag ccagggactt agtccccctc atattaggtg
1261 gcataggctt agcaattggt tttacaagag acaaaataac aaaagtgatg aagagtgccg
1321 ttgatgggct gcggtcagca acgcagctcg gacaatatgg actggagata ttctcaatta
1381 tcaagaaata cttctttgga ggggaccaaa cagaaaagac cctgcggggc attgaagatg
1441 cggtgataga catggaagtg ttgtccagta ccaatgtgac gcaactggtc aaagataaga
1501 agttagccaa agcttacatg aatgtactgg acaatgagga ggaaaaagca aggaagctct
1561 cagtccgtag tgctgaccca catatagtga cctctgtcaa caacttgata tcacgcatct
1621 ctatggcaag atcagctctg gctaaagccc aagctgagtt gacgtcccgc ccacgaccag
1681 tggttataat gatgtgtggt cctcctggta tcggaaagac taaggccgct gagcacctag
1741 ccggccgact agctgctgaa atcagacctg gaggtaaagt tggccttgta ccccgggagt
1801 ccatagacca ttgggatgga tatcatggcg aggacgtctt gctctgggat gactatggca
1861 tgtcaaagat aacagaggat tgtaataagt tacaggctat agctgatact gcaccactgt
1921 cacttaattg tgacagaata gaaaacaaag gcatgcaatt ctcttctgat gcaataatta
1981 taaccaccaa tgcccctggc ccagccccag tcgactttgt caacttaggc cccgtgtgca
2041 gacgagtgga ctttttagtt tactgttctg cacccgagat tgaacaaacg cggagggctc
2101 atccaggtga caccaatgcc atcaaggatc tgtttaaaaa ggacttctca cacttgaaaa
2161 tggaactggc tccacagggc ggctttgata gtcagggcaa cacacctttt gggaagggtg
2221 tcatgaaaac cacaactctc aataggctac tgatacaggc cacagcatta gccatggagc
2281 gacaagatga attccaattc cagggggctg tctacaactt tgacgaggat agagtggccg
2341 ccttcaccaa tctagctcga gctaatggcc tggggcttat aagtatggca acattaggca
2401 agaagctgag aagtgttaag tccatggaag gcttgcgcaa tgcactactg ggatacaaga
2461 ttggagagtg cgatataatc tggaacacca gggtgtattc agttaagagt gacgggagca
2521 atgtcacaat taaagaaaag caggcaccgt cctcacccca acatcaagct atttccacag
2581 ccaccctggc gctctctaga ctgcgggctg ccagagccct tgcgtacgct tcctgtttac
2641 aaagtgcagt gttgtcaata cttcaggttg ccggctctgc cttagtggtg agcagggctg
2701 taaaacgcat gtttggcaca cgcaccgaac agcccattct ggagggtaag cataaagaac
2761 acaactgcag agtacaccgt gcagaggccg ccggtcatgg ccccattggt catgatggaa
2821 tcattgaacg ttatggtctg tgtgagagtg agcaggaagg agaagatgac caaactgtgg
2881 agttgcccac tgctgacaaa gaaggcaaga acaaaggcaa aaccaaaaag ggccgcggac
2941 ggaaatccaa cttcaatgca ttctctaggc gtggacttag tgatgaggaa tacgaggagt
3001 acaagaaagt aagagaagag aagggtggca actacagcat acaagagtac cttgaggacc
3061 gccagcgcta tgaagaagaa ctcgctgagg tgcaagctgg tggagatggt gggatcggcg
3121 aaactgaagc tgagatccgc caccgtgttt tctataaatc aaagtctggc ttgagaaaac
3181 agcggcaaga ggaacgccgc cagttaggcc tcgtgagcgg tactgaaatc cgcaaacgca
3241 aacccataga ctggaccccc cccaaaaatg attggtcaga ggacactaga actgttaatt
3301 atgatgaaca catcagcttt gaagcccccc cttcaatctg gagtagagta gttaaatttg
3361 gcagtggctg gggtttttgg gtgagttcaa cagtgttcat caccacaaca catgttatac
3421 cacctggtgc taaagagatc tttggtgaga acattagcaa tattgccatc catagagttg
3481 gcgaattcac ccaattccgt ttctccaaga aaatgaggcc tgacctctct ggcatggtcc
3541 tggaagaggg atgccctgag ggcacagtgt gcaccataat gataaaaaga gactctggag
3601 aactgttgcc gctggctgtt cgtatgggag cagtggcctc aatgaagatc caagggaagc
3661 ttatgcatgg acagtcaggg atgttgctca ccggtgctaa cgccaagggc atggaccttg
3721 gtaccatacc tggggattgt ggagcgccct atatccataa gagagggaat gactgggtgg
3781 tttgtggggt gcatgcagca gccacgaaat caggcaatac cgtggtgtgc gccatacaag
3841 gtggtgaagg tgaagccacg ctagagggtg gcgatcaaaa taagggtcat tatgcaggac
3901 acccaatact aagatatggt agtggccctt cattgtcaac taaaacaaag ttttggaaat
3961 caaaccccca acctctaccc cctggtacat atgaaccagc ctacctcggt ggcaaagacc
4021 ccagggttga aggtggtcca tctttgcagc aagtgttgcg agaccagcta aaaccatttg
4081 ctgaaccccg tggcaggttg cctgaagcag gattgctaga agccgcggtt gaaactgtca
4141 ccaatgcaat tgaacaggtc atggacacac ctgtggcatg gagttacggc gacgcctgca
4201 tgtccttgga caaaacaacc agttctggct accctcatca caaaagaaag aatgatgact
4261 ggaacgggag ttcatttgtg agagaattgg gagaccaggc agcgcatgct aatagcatgt
4321 atgagcttgg taaatctatg aaaccagtgt acacagcagc actcaaggat gagcttgtta
4381 agccagacaa ggtgtacaat aaaattaaga aaaggctact ctggggggcg gacctcggca
4441 ccgtcatacg tgctgctagg gcttttgggc cattttgtga agcaataaag ccccatgtga
4501 ttaagttgcc cattaaagtg ggcatgaatg ccatagaaga tggaccctta atttatgcag
4561 aacactccaa atacaagtat cattttgatg ctgattacac agcatgggac tcaacacaaa
4621 atagggagat tatgatggag tcctttaaca tcatgtgtaa actcaccgct aatccctccc
4681 tggccgcagt ggtggcacag gacctgctct ctccttctga gatggatgtc ggtgattatg
4741 tgatcagtgt caaagatggt ctaccatctg gctttccatg cacctcacaa gtgaacagta
4801 tcaaccattg gatctacact ttgtgcgcct tatcagaggt tactggtttg gctcctgacg
4861 taatacagtc acagtcttac ttttcatttt atggtgatga tgaaatagtt tcaacagata
4921 ttgaatttga ctcaaacaga ctaacacagg tgctaaaaga gtatggctta aaacccacaa
4981 gacctgataa aactgatggt ccgatcattg taaggcaaca ggttgatggc ttggttttcc
5041 ttcggcgcac catctcgaag gatgccatcg ggtaccaggg tcggcttgat cgcaattcca
5101 ttgaaagaca gctctggtgg acccgagggc ccaatcatga tgatccattt gaaaccttgg
5161 tcccacacac acagaggaag gtccaattaa tatccctatt aggtgaggcc gcactccatg
5221 gtgagaaatt ttatagaaag atagccagta gggtgatcca ggaggttaaa gaaggaggat
5281 tggaaattta catccctggg tggcaggcca tgttccgctg gatgcgattc catgatttga
5341 gtttgtggac aggagaccgc gatctcctgc ccgattatgt aaatgatgat ggcgtctaag
5401 gacgccccaa caaacatgga tggcaccagt ggtgccggcc agctggtacc agaggcaaat
5461 acagctgagc ctatatcaat ggagccagtg gctggggcag cgacagctgc cgcaaccgct
5521 ggccaagtta atatgattga cccctggatt atgaataatt atgtgcaagc cccacaaggt
5581 gaattcacca tatcaccaaa caacacacca ggtgatattc tatttgattt acaattaggc
5641 cctcacctca acccctttct atcccatttg gctcaaatgt acaatgggtg ggtaggtaac
5701 atgaaagtga aagttctatt ggcaggtaat gctttcacgg caggaaaaat tattattagt
5761 tgtatacccc ctggttttgt ctcacagaat atatctatag ctcaagctac aatgttcccc
5821 cacgttatag ctgatgtcag ggtcctggag cccattgagg tcccattgga ggatgtgagg
5881 aatgtgttgt tccacaataa tgataacaca ccaaccatga gactggtatg catgctctat
5941 acccccttgc gtgccagcgg aagctcatct gggacagacc cctttgtgat tgctgggcgt
6001 gtgttgacct gccctagtcc tgattttagc ttcttattct tggtgccccc caatgtagaa
6061 caaaagacta aaccttttag tgtcccagat ctcccactca atgttctatc aaattcaagg
6121 gtgccgtcac tgataaaatt catgatggtg tcacaggacc acggacagat ggtacaattt
6181 cagaatggca gggtcacact ggatggacag ctccagggca ccacaccaac atcggccagc
6241 cagctctgca agatgcgggg gacggtttac catgcctccg gtggtcaagg gctcaattta
6301 actgagattg atggcacccc ctatcatgca tttgaaagcc cagctcccat tggtttccct
6361 gacataggag acagcgattg gcatgtcaac gcttcacccg ccaccgcctt cggcagtggc
6421 gaaagcgtca aaagactaga tatggaacag ggctcttcat ttgccccaca tttgggtact
6481 gtacactata ctaatgccag ctatgaagct aacactgacc tgatctgctc attggagtgg
6541 ctatccccgc ctagcggagg cactccaaac aaagtcaacc cttgggccat tccacggtat
6601 ggttcaactt taactgaagc tgctcagcta gccccaccaa tttacccccc tggctttgga
6661 gaagctatag ttttctttat gtctgatttt cctatagcaa atggtcaaga tgggttaaga
6721 gtgccctgca ctatacccca agaatttgta acccattttg tcaatgaaca agcaccaacc
6781 cgtggggaag ctgcccttct tcattatgtt gaccccgaca cacaccgcaa tttgggtgag
6841 tttaagttat accctgaagg atttatgact tgtgtaccaa attccagtgg tagtggtccc
6901 caaacgctgc ctatcaatgg agtcttcact tttgtctctt gggtttcccg tttctatcag
6961 ttaaagcctg tgggaacgac cggaccggtt cgtaggctag gaatcaggag atcataatgg
7021 cccaggcaat atttggagca atagctgcga cggctgctgg tagcgctgtg ggtgcaggca
7081 ttcaggctgg tactgaggcc gcactccaac atcagcggtt ccagcaggat ttaacgttgc
7141 agagcaacac tttcaaacat gacaaagaaa tgctagggct acaggttggt gcttccactg
7201 ctcttttgca aaacagcctc aacacccgct acaacatgct cacaaatgct ggtctctcgt
7261 cctcagatgc agcacgcgtg gtggttggcg cgccagccac acgtgttgtt gactggaacg
7321 gcaccagggt gtcagcacca caatctacag ctaccacgtt gaggtctggt gggttcatga
7381 caatcccaac tctgtacaag ggcaaacaac agcagaaagc tccaactgaa attggcttat
7441 ctaacccaaa ttatggttca tctgtgtctt ctagggttgc tgattgggtt tcctctcaaa
7501 attcttctcg ctcatccttg ggcccgtatc accccagtgc tttgcagaca acatgggtga
7561 ccccacccgg ttctagttct acttctacta tttcttctgt gtctactgca cctagatatt
7621 tcaatactga taggttgcct ctattcgcaa atatgaggaa ataatttttg taatatgaaa
//