Typing tool
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Typing tool
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Complete norovirus genomes
| MT526276 | GI.3 | |
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| GI.P13 |
ORF1: 1..5400
ORF2: 5384..7018
ORF3: 7018..7665
LOCUS MT526276 7684 bp RNA linear VRL 02-JUN-2020
DEFINITION Norovirus GI isolate 329-3 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MT526276
VERSION MT526276.1
DBLINK BioProject: PRJNA604000
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7684)
AUTHORS Yang,Z.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2020) Molecular Virology Team/Devision of
Molecular Biology, OARSA/CFSAN/FDA, 8301 Muirkirk Rd., Laurel, MD
20708, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC GWB v. 11
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7684
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="329-3"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="26-May-2014"
/note="genotype: GI.3[P13]"
gene <1..5400
/gene="ORF1"
CDS <1..5400
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QKE42656.1"
/translation="MASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGETT
TKIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQE
STARAWCDLSKEEKEEIIRNNERLFDAGGVTPSTLPSTFERTDSNSVTDEQQPVTWSS
NGGVDLGINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAIYI
GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYAS
ITNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
SAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDIS
SFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQL
GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYMN
VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMMC
GPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
VDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGKG
VMKTTTLNRLLIQATALAMERQDEFQFQGAVYNFDEDRVAAFTNLARANGLGLISMAT
LGKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQHQ
AISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPIL
EGKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKNK
GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAE
VQAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTPP
KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE
IFGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLP
LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVVC
GVHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFWK
SNPQPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
TVTNAIEQVMDTPVAWSYGDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAH
ANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCE
AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNIM
CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCA
LSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDGP
IIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQR
KVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT
GDRDLLPDYVNDDGV"
mat_peptide <1..1215
/gene="ORF1"
/product="p48"
mat_peptide 1216..2304
/gene="ORF1"
/product="NTPase"
mat_peptide 2305..2904
/gene="ORF1"
/product="p22"
mat_peptide 2905..3324
/gene="ORF1"
/product="VPg"
mat_peptide 3325..3867
/gene="ORF1"
/product="Pro"
mat_peptide 3868..5397
/gene="ORF1"
/product="RdRp"
gene 5384..7018
/gene="ORF2"
CDS 5384..7018
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QKE42657.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
VNASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7018..7665
/gene="ORF3"
CDS 7018..7665
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QKE42658.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc taacaccaac
61 aatgaaaaca taggatctcg ccttatggca aagatccgtg ggcgtatagg cccacaacgt
121 ggtgaaacaa ccacaaagat caaagatgcc aacatggcgc tcgacctttt acgccggtca
181 caaacaccat ctccatgtcg gcaaactaat gacagtgccc ccaaggctca aagggaccgt
241 cccccgcgga ccgcttcaga ggtaaaaagg gcgctggggt gggatgctga accagaacac
301 caagaaagca cggctagggc atggtgtgac ctctcaaaag aggagaagga agagataata
361 cgtaacaatg agaggctttt tgatgctgga ggtgtcactc catcgaccct gcccagcaca
421 tttgagagga ctgattcaaa cagtgtcact gacgagcaac aacctgtgac atggtcttct
481 aatggagggg ttgaccttgg catcaatgaa ttgaccacag ttcgtggccc gttttggaat
541 atgtgccccc tcccaccact agaagcccgc aatagtggcc ctgctaagga accccttata
601 ggtgacatgg tcgagttcta tgaaggacac atattccatt atgccattta cattggacag
661 ggcaagacta ttggagtcca ctcaccacag gccgcttttt ccatacccag aataaccatc
721 cacccactgg tggcctggtg gcgtgtgtgt tacatcccca ctagccaaca acgccttacc
781 tacgaacagc ttaaggagtt ggagaatgaa ccatggccct atgcctcaat caccaacaac
841 tgttatgagt tttgctgtaa agtgatggca cttgatgata cctggctcca aagaagactg
901 gttactagtg gaaaatttaa ccaccccaca caggactggt cacaggacac cccagatttc
961 catcaggatt cgaagcttga aatggtaagg gacgctgtct tgtcggccat caacggtctt
1021 gtatcacaac ccttcaagaa catcctgtct aaaattaaac cattaaatgt gcttaatctt
1081 ttatcaaact gtgattggac cttcatgggc gtcgtggaac tggtagtgct cctggcagaa
1141 ctgtttgatg tgttctggac cccaccagac atttcaagct tcattgcatc tttactacct
1201 gattttcatc tacaaggccc agaagaccta gccagggact tagtccccct catattaggt
1261 ggcataggct tagcaattgg ttttacaaga gacaaaataa caaaagtgat gaagagtgcc
1321 gttgatgggc tgcggtcagc aacgcagctc ggacaatatg gactggagat attctcaatt
1381 atcaagaaat acttctttgg aggggaccaa acagaaaaga ccctgcgggg cattgaagat
1441 gcggtgatag acatggaagt gttgtccagt accaatgtga cgcaactggt caaagataag
1501 aagttagcca aagcttacat gaatgtactg gacaatgagg aggaaaaagc aaggaagctc
1561 tcagtccgta gtgctgaccc acatatagtg acctctgtca acaacttgat atcacgcatc
1621 tctatggcaa gatcagctct ggctaaagcc caagctgagt tgacgtcccg cccacgacca
1681 gtggttataa tgatgtgtgg tcctcctggt atcggaaaga ctaaggccgc tgagcaccta
1741 gccggccgac tagctgctga aatcagacct ggaggtaaag ttggccttgt accccgggag
1801 tccatagacc attgggatgg atatcatggc gaggacgtct tgctctggga tgactatggc
1861 atgtcaaaga taacagagga ttgtaataag ttacaggcta tagctgatac tgcaccactg
1921 tcacttaatt gtgacagaat agaaaacaaa ggcatgcaat tctcttctga tgcaataatt
1981 ataaccacca atgcccctgg cccagcccca gtcgactttg tcaacttagg ccccgtgtgc
2041 agacgagtgg actttttagt ttactgttct gcacccgaga ttgaacaaac gcggagggct
2101 catccaggtg acaccaatgc catcaaggat ctgtttaaaa aggacttctc acacttgaaa
2161 atggaactgg ctccacaggg cggctttgat agtcagggca acacaccttt tgggaagggt
2221 gtcatgaaaa ccacaactct caataggcta ctgatacagg ccacagcatt agccatggag
2281 cgacaagatg aattccaatt ccagggggct gtctacaact ttgacgagga tagagtggcc
2341 gccttcacca atctagctcg agctaatggc ctggggctta taagtatggc aacattaggc
2401 aagaagctga gaagtgttaa gtccatggaa ggcttgcgca atgcactact gggatacaag
2461 attggagagt gcgatataat ctggaacacc agggtgtatt cagttaagag tgacgggagc
2521 aatgtcacaa ttaaagaaaa gcaggcaccg tcctcacccc aacatcaagc tatttccaca
2581 gccaccctgg cgctctctag actgcgggct gccagagccc ttgcgtacgc ttcctgttta
2641 caaagtgcag tgttgtcaat acttcaggtt gccggctctg ccttagtggt gagcagggct
2701 gtaaaacgca tgtttggcac acgcaccgaa cagcccattc tggagggtaa gcataaagaa
2761 cacaactgca gagtacaccg tgcagaggcc gccggtcatg gccccattgg tcatgatgga
2821 atcattgaac gttatggtct gtgtgagagt gagcaggaag gagaagatga ccaaactgtg
2881 gagttgccca ctgctgacaa agaaggcaag aacaaaggca aaaccaaaaa gggccgcgga
2941 cggaaatcca acttcaatgc attctctagg cgtggactta gtgatgagga atacgaggag
3001 tacaagaaag taagagaaga gaagggtggc aactacagca tacaagagta ccttgaggac
3061 cgccagcgct atgaagaaga actcgctgag gtgcaagctg gtggagatgg tgggatcggc
3121 gaaactgaag ctgagatccg ccaccgtgtt ttctataaat caaagtctgg cttgagaaaa
3181 cagcggcaag aggaacgccg ccagttaggc ctcgtgagcg gtactgaaat ccgcaaacgc
3241 aaacccatag actggacccc ccccaaaaat gattggtcag aggacactag aactgttaat
3301 tatgatgaac acatcagctt tgaagccccc ccttcaatct ggagtagagt agttaaattt
3361 ggcagtggct ggggtttttg ggtgagttca acagtgttca tcaccacaac acatgttata
3421 ccacctggtg ctaaagagat ctttggtgag aacattagca atattgccat ccatagagtt
3481 ggcgaattca cccaattccg tttctccaag aaaatgaggc ctgacctctc tggcatggtc
3541 ctggaagagg gatgccctga gggcacagtg tgcaccataa tgataaaaag agactctgga
3601 gaactgttgc cgctggctgt tcgtatggga gcagtggcct caatgaagat ccaagggaag
3661 cttatgcatg gacagtcagg gatgttgctc accggtgcta acgccaaggg catggacctt
3721 ggtaccatac ctggggattg tggagcgccc tatatccata agagagggaa tgactgggtg
3781 gtttgtgggg tgcatgcagc agccacgaaa tcaggcaata ccgtggtgtg cgccatacaa
3841 ggtggtgaag gtgaagccac gctagagggt ggcgatcaaa ataagggtca ttatgcagga
3901 cacccaatac taagatatgg tagtggccct tcattgtcaa ctaaaacaaa gttttggaaa
3961 tcaaaccccc aacctctacc ccctggtaca tatgaaccag cctacctcgg tggcaaagac
4021 cccagggttg aaggtggtcc atctttgcag caagtgttgc gagaccagct aaaaccattt
4081 gctgaacccc gtggcaggtt gcctgaagca ggattgctag aagccgcggt tgaaactgtc
4141 accaatgcaa ttgaacaggt catggacaca cctgtggcat ggagttacgg cgacgcctgc
4201 atgtccttgg acaaaacaac cagttctggc taccctcatc acaaaagaaa gaatgatgac
4261 tggaacggga gttcatttgt gagagaattg ggagaccagg cagcgcatgc taatagcatg
4321 tatgagcttg gtaaatctat gaaaccagtg tacacagcag cactcaagga tgagcttgtt
4381 aagccagaca aggtgtacaa taaaattaag aaaaggctac tctggggggc ggacctcggc
4441 accgtcatac gtgctgctag ggcttttggg ccattttgtg aagcaataaa gccccatgtg
4501 attaagttgc ccattaaagt gggcatgaat gccatagaag atggaccctt aatttatgca
4561 gaacactcca aatataagta tcattttgat gctgattaca cagcatggga ctcaacacaa
4621 aatagggaga ttatgatgga gtcctttaac atcatgtgta aactcaccgc taatccctcc
4681 ctggccgcag tggtggcaca ggacctgctc tctccttctg agatggatgt cggtgattat
4741 gtgatcagtg tcaaagatgg tctaccatct ggctttccat gcacctcaca agtgaacagt
4801 atcaaccatt ggatctacac tttgtgcgcc ttatcagagg ttactggttt ggctcctgac
4861 gtaatacagt cacagtctta cttttcattt tatggtgatg atgaaatagt ttcaacagat
4921 attgaatttg actcaaacag actaacacag gtgctaaaag agtatggctt aaaacccaca
4981 agacctgata aaactgatgg tccgatcatt gtaaggcaac aggttgatgg cttggttttc
5041 cttcggcgca ccatctcgaa ggatgccatc gggtaccagg gtcggcttga tcgcaattcc
5101 attgaaagac agctctggtg gacccgaggg cccaatcatg atgatccatt tgaaaccttg
5161 gtcccacaca cacagaggaa ggtccaatta atatccctat taggtgaggc cgcactccat
5221 ggtgagaaat tttatagaaa gatagccagt agggtgatcc aggaggttaa agaaggagga
5281 ttggaaattt acatccctgg gtggcaggcc atgttccgct ggatgcgatt ccatgatttg
5341 agtttgtgga caggagaccg cgatctcctg cccgattatg taaatgatga tggcgtctaa
5401 ggacgcccca acaaacatgg atggcaccag tggtgccggc cagctggtac cagaggcaaa
5461 tacagctgag cctatatcaa tggagccagt ggctggggca gcgacagctg ccgcaaccgc
5521 tggccaagtt aatatgattg acccctggat tatgaataat tatgtgcaag ccccacaagg
5581 tgaattcacc atatcaccaa acaacacacc aggtgatatt ctatttgatt tacaattagg
5641 ccctcacctc aacccctttc tatcccattt ggctcaaatg tacaatgggt gggtaggtaa
5701 catgaaagtg aaagttctat tggcaggtaa tgctttcacg gcaggaaaaa ttattattag
5761 ttgtataccc cctggttttg tctcacagaa tatatctata gctcaagcta caatgttccc
5821 ccacgttata gctgatgtca gggtcctgga gcccattgag gtcccattgg aggatgtgag
5881 gaatgtgttg ttccacaata atgataacac accaaccatg agactggtat gcatgctcta
5941 tacccccttg cgtgccagcg gaagctcatc tgggacagac ccctttgtga ttgctgggcg
6001 tgtgttgacc tgccctagtc ctgattttag cttcttattc ttggtgcccc ccaatgtaga
6061 acaaaagact aaacctttta gtgtcccaga tctcccactc aatgttctat caaattcaag
6121 ggtgccgtca ctgataaaat tcatgatggt gtcacaggac cacggacaga tggtacaatt
6181 tcagaatggc agggtcacac tggatggaca gctccagggc accacaccaa catcggccag
6241 ccagctctgc aagatgcggg ggacggttta ccatgcctcc ggtggtcaag ggctcaattt
6301 aactgagatt gatggcaccc cctatcatgc atttgaaagc ccagctccca ttggtttccc
6361 tgacatagga gacagcgatt ggcatgtcaa cgcttcaccc gccaccgcct tcggcagtgg
6421 cgaaagcgtc aaaagactag atatggaaca gggctcttca tttgccccac atttgggtac
6481 tgtacactat actaatgcca gctatgaagc taacactgac ctgatctgct cattggagtg
6541 gctatccccg cctagcggag gcactccaaa caaagtcaac ccttgggcca ttccacggta
6601 tggttcaact ttaactgaag ctgctcagct agccccacca atttaccccc ctggctttgg
6661 agaagctata gttttcttta tgtctgattt tcctatagca aatggtcaag atgggttaag
6721 agtgccctgc actatacccc aagaatttgt aacccatttt gtcaatgaac aagcaccaac
6781 ccgtggggaa gctgcccttc ttcattatgt tgaccccgac acacaccgca atttgggtga
6841 gtttaagtta taccctgaag gatttatgac ttgtgtacca aattccagtg gtagtggtcc
6901 ccaaacgctg cctatcaatg gagtcttcac ttttgtctct tgggtttccc gtttctatca
6961 gttaaagcct gtgggaacga ccggaccggt tcgtaggcta ggaatcagga gatcataatg
7021 gcccaggcaa tatttggagc aatagctgcg acggctgctg gtagcgctgt gggtgcaggc
7081 attcaggctg gtactgaggc cgcactccaa catcagcggt tccagcagga tttaacgttg
7141 cagagcaaca ctttcaaaca tgacaaagaa atgctagggc tacaggttgg tgcttccact
7201 gctcttttgc aaaacagcct caacacccgc tacaacatgc tcacaaatgc tggtctctcg
7261 tcctcagatg cagcacgcgt ggtggttggc gcgccagcca cacgtgttgt tgactggaac
7321 ggcaccaggg tgtcagcacc acaatctaca gctaccacgt tgaggtctgg tgggttcatg
7381 acaatcccaa ctctgtacaa gggcaaacaa cagcagaaag ctccaactga aattggctta
7441 tctaacccaa attatggttc atctgtgtct tctagggttg ctgattgggt ttcctctcaa
7501 aattcttctc gctcatcctt gggcccgtat caccccagtg ctttgcagac aacatgggtg
7561 accccacccg gttctagttc tacttctact atttcttctg tgtctactgc acctagatat
7621 ttcaatactg ataggttgcc tctattcgca aatatgagga aataattttt gtaatatgaa
7681 atat
//