Typing tool
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Typing tool
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Complete norovirus genomes
| MT372477 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS MT372477 7696 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2018/GI.6[P11]/Cabarrus0282, complete
genome.
ACCESSION MT372477
VERSION MT372477.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7696)
AUTHORS Randazzo,W., Chhabra,P., Rath,S., Montmayeur,A.M., Tatusov,R.L.,
Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7696
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Cabarrus0282"
/isolate="Hu/US/2018/GI.6[P11]/Cabarrus0282"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="05-Jan-2018"
/note="genotype: GI.6[P11]"
gene 5..5371
/gene="ORF1"
CDS 5..5371
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23091.1"
/translation="MMMASNDAVATNVASNNNANNTSATSRFLSRFKGLGGGASPPNP
IKIKSTEMALGLIGKATQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVK
SWEELDTPTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMDGLKNALKGCKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRIAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
mat_peptide 5..1201
/gene="ORF1"
/product="p48"
mat_peptide 1202..2290
/gene="ORF1"
/product="NTPase"
mat_peptide 2291..2887
/gene="ORF1"
/product="p22"
mat_peptide 2888..3301
/gene="ORF1"
/product="VPg"
mat_peptide 3302..3844
/gene="ORF1"
/product="Pro"
mat_peptide 3845..5368
/gene="ORF1"
/product="RdRp"
gene 5355..6977
/gene="ORF2"
CDS 5355..6977
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23092.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="ORF3"
CDS 6977..7606
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23093.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNIRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRPVSPFHSDALRTVWVTPPGSTSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctgt tgcgactaat gttgcaagca ataacaacgc
61 taacaacact agtgctacat ctcgattttt gtcgagattt aagggtttag gcggtggcgc
121 gagcccccct aaccccataa agatcaaaag cacagaaatg gccttgggtt tgattggcaa
181 ggcaacccaa gaggcagtag gtgccagtga cctaccgcct aaacagcaaa gagaccggcc
241 ccccagaacc caagaggaag ttcagtacgg catggggtgg actgaaaggc ccgtggacca
301 gaatgttaag tcatgggagg aacttgacac ccccaccaag gaagagattt tggacagcca
361 caaagaatgg ttcgatgccg gcggtttggg cccgtgcact atgccctcaa cttgtgaaca
421 ggctaaagat gatagcccgc ctggtgagca agtcagatgg tcagcgcgtg atggagtcaa
481 ccttggagtg aaccgtctca cgacggtgag tggccccgag tggaacctct gccctctacc
541 ccccattgac ctaaggaata tggaaccagc tagtgaaccc accattggag acatgataga
601 gttttatgaa ggccatatct accactactc catatacatt ggacaaggaa agacagttgg
661 tgtgcattcc ccacaggcag cattctcagt ggctagagta accatccaac ctatagctgc
721 ttggtggagg gtttgttata taccccagcc caaacataga ctgagctatg accaacttag
781 ggaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgtt ttgagttttg
841 ctgtcaagtt atgaaccttg aggacacatg gttgcagagg cgactaataa catcaggtag
901 attccaccac ccttcccagt cttggtcaca acagacccct gaatttcagc aggacagtaa
961 actggaactg gttagggatg ccatattggc cgcggtgaat ggccttgttt cacaaccctt
1021 caagaatttc ttgggcaagc tcaagcctct taatgtatta aacatcctat ctaactgtga
1081 ctggactttt atgggggtgg tagagatggt tatactactt cttgagctct ttggtgtgtt
1141 ctggaacccg cccgatgtgt ctaattttat agcgtctctc ctccctgact tccacctcca
1201 gggaccagaa gacctggccc gggatttggt gccagtcatt cttggtggca taggactagc
1261 cattggattt accagagata aagtcaccaa ggtcatgaag agtgctgtgg atggactccg
1321 agccgctaca cagctggggc aatacgggtt ggaaatattc tcactcctca agaagtattt
1381 ctttggtggg gatcagactg aacgaaccct caaaggcatt gaagcagcag tcatagatat
1441 ggaggttttg tcctctacat cagtgacaca attggtgaga gataagcagg cagctaaagc
1501 ttacatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc
1561 tgacccccat gtaatatcct caacaaatgc cctaatatca cgtatagcca tggcgcgatc
1621 cgccctggct aaggctcaag ctgagatgac cagccgaatg aggccagttg tcatcatgat
1681 gtgtggacct cctggaattg gtaagactaa agcagcggaa cacttggcaa aacgcctagc
1741 taatgagatc aggcctggcg gcaaagtggg actggtacca cgtgaggctg ttgaccactg
1801 ggatggctac catggtgagg aagtgatgtt atgggatgac tatggtatga caaagataca
1861 agatgactgc aacaagctcc aggctattgc tgactctgcc ccactcactc tcaattgtga
1921 taggattgaa aataaaggga tgcagtttgt gtcagatgca atagtcatca ccaccaacgc
1981 tccagggccc gcccctgtgg actttgtcaa ccttggccct gtgtgtagac gagttgactt
2041 cctggtttac tgttccgccc cagaggtaga gcagataagg agagtcagcc ctggagacac
2101 gtcggcactt aaagactgct tcaagtcaga tttctcccac ctgaagatgg agttagctcc
2161 tcaagggggg tttgacaacc aggggaacac accattcggc aagggtgtca tgaaaccaac
2221 aaccatcaac aggctcctca tacaagctgt ggctctcacc atggagagac aggatgagtt
2281 ccgtctccaa gggaagatgt atgattttga tgatgacagg gtgtcagcct tcaccaccat
2341 ggcacgcgat aatggattgg gtatcctgag catggcgagc ctaggtaaga agctgcgcgg
2401 tgtcacatcg atggatggtc tgaagaatgc tttgaaaggg tgtaaaattg gtgcgtgcac
2461 aatcaagtgg caggccaagg tgtattcact agagtcagat ggcaacagtg ttaacatcag
2521 ggaggagaag aatgtcttaa ctcaacaaca gcagtcggtg tgcgctgcct ctattgcact
2581 cacccgtctg cgggccgcac gcgcggtggc gtatgcgtca tgtattcagt cagccataac
2641 ctccatacta caaattgctg cctctgccct agtggtcaac agggccgtga aaagaatgtt
2701 tggcacacgc attgctgctt tgtctctaga gggccccccc aaagaacaca aatgcagagt
2761 ccaccaggct aaagccgcag gaaaagggcc cattggccat gatgacatgg ttgataaata
2821 tggtctatgt gagactgagg aggatgaaga agtagtccac actgagatac catctgccac
2881 catagaaggt aagaacaaag gaaagaacaa gaaagggcgc ggccgaaaga acaactacaa
2941 tgccttttcc cgtagagggc tcaatgacga agagtacgag gagtacaaga aaatacggga
3001 agagaagggt ggaaattaca gcattcagga gtacttagag gatagacaaa ggtatgaaga
3061 ggagcttgct gaagttcaag caggtggaga tggaggaatc ggtgaaactg aaatggaaat
3121 ccgccataga gtgttctaca agtctaagag caagaagcac caccaggaag agcgacgcca
3181 actggggtta gtcacaggtt ctgacatccg gaaaagaaaa ccaattgact ggaccccccc
3241 taagtcagca tgggcagatg atgagcgtga agtggactac aatgagagga tcaactttga
3301 ggcgcccccc actttgtgga gccgggtcac aaagtttgga tctgggtggg gcttctgggt
3361 cagccccaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aagagttctt
3421 tggtgaaccc cttgccagca tagccatcca cagagccgga gaattcaccc tcttcaggtt
3481 ctctaagaaa atcaggcccg atctcacggg catgattctt gaggaaggct gcccagaggg
3541 tacggtgtgc tcagtattaa taaaaaggga ctccggtgag ctactaccac tagctgtaag
3601 aatgggcgca atagcatcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat
3661 gttgctcact ggggcgaatg ctaagggcat ggacctcgga actattccag gggattgtgg
3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc acgctgctgc
3781 cactaaatca ggcaacacgg tagtgtgcgc cgttcaggct agtgaagggg aaaccacact
3841 tgagggaggt gacaaaggtc actatgccgg acatgagata atcaagcatg gatgtgggcc
3901 agccctgtca accaaaacaa agttctggaa atcgtcccct gaaccactac cccctggagt
3961 ctatgaacct gcatacctcg gtggccggga tccaagagtg agtggtggcc cctcgctcca
4021 acaggtgtta cgggatcagt taaagccatt tgctgagcca cgggggcgta tgccggaacc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac
4141 cccagtgccg tggagttaca gcgatgcatg tcaatcccta gataaaacta ctagttctgg
4201 tttcccccat cacaagaaga agaacgatga ttggaacggc actgccttca ttagagagtt
4261 aggagagcag gcagcgcacg ccaataatat gtacgaacaa gctaagagca tgaagcccat
4321 gtacacggcg gcgcttaagg atgaattggt gaaaccagaa aaagtgtacc aaaaagtgaa
4381 gaagcgcttg ctttgggggg cagatctagg aacagtgatc cgggccgcac gggcctttgg
4441 cccattctgt gatgctataa agtcccacac aattaaacta cctatcaaag ttggaatgaa
4501 ttcaatcgag gatgggccat taatttatgc agagcactca aaatataaat atcactttga
4561 tgcagactat acggcttggg actcaacaca aaataggcaa attatgactg aatcattctc
4621 aatcatgtgt cggctaactg cttctccaga attggcctca gtggtggcac aagatctgct
4681 tgcaccctca gaaatggacg ttggtgacta cgtcataaga gtgaaggaag gcctcccatc
4741 tggctttcca tgcacatcac aggtcaatag cataaaccat tggttaataa ctttgtgtgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttatccaa tccatgtcat acttttcttt
4861 ctatggtgat gatgaaatag tttccactga catagaattt gacccagcaa agctgacaca
4921 agtccttaaa gagtatggcc tcaaacccac ccgccctgac aagagtgaag gtccaataat
4981 tgtgaggaag agtgtggatg gcctggtctt cttacgtcgc accatttccc gcgacgccgc
5041 ggggttccag gggcgactgg accgagcatc cattgaaagg cagatctact ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aaatccagct
5161 gatatcactg ttaggtgaag cctcattgca tggtgaaaaa ttctacagga agatctcaag
5221 caaagttatc caagagatta agacaggggg tcttgaaatg tatgtgccag ggtggcaagc
5281 catgttccgc tggatgcggt tccacgacct tggcctgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 tcgcgggtgc ttcaacagca gtcgcgacag ctgggcaagt taatatgatt gacccatgga
5521 ttttcaataa ctttgtccag gcacctcaag gagaattcac tatttcccct aataataccc
5581 ccggtgacat tttgtttgat ttacaactag gaccccacct taatccattt ctagcccatc
5641 tctcacagat gtacaatggt tgggtcggca atatgcgtgt gcgcatactg ttggccggga
5701 atgcctttac agctggaaag ataatcattt gctgtgtccc ccctggtttt gatgctagaa
5761 tactcacaat agctcaagca actctcttcc cacacttaat tgccgatgta aggacccttg
5821 agcctgtgga gcttcccttg gaggatgtgc gcaatgtcct cttccacaac agtagccaac
5881 cgcagccaac aatgcggctg gttgctatgt tgtacactcc cctccgcact ggtggtggtt
5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtact tacgtgcccc gcccccgact
6001 ttagttttct gtttctggtc cccccttccg ttgaacaaaa gaccagagtt ttcagtgtcc
6061 ccaatatacc cctgaaggat ctctcaaatt cccgtgtccc tgtgcctgta cagggcatgt
6121 ttatgtctcc agatgttaat cagtcagtcc agtttcagaa tggacgctgc caaattgatg
6181 gccaactcca aggcaccact ccagtctcgc tcagccaact ctgcaagatt aggggtaaaa
6241 cttctagtaa tgctagggtg ctcaacttaa gtgaggtaga tggcacaccc ttcatcccac
6301 ttgaatcacc agcgccagtt ggttttcccg atttgggagg ttgtgactgg catgtaaatt
6361 tcaccttcca ggctcaagat caggatccat ctcaaagtgt aacctttgca actaatgatg
6421 ccagctttgt cccctatcta ggtagtatct ctcctcacaa tgggggagat tttcatgcag
6481 gtgacatcat aggtagcctt ggttggattt cagccccgtc tgacaattca caactcaatg
6541 tttggacaat accaaagtat ggatctagtc tcccagatgt cactcatctt gcccctgctg
6601 tgttcccccc aggctttggt gaggtgatct tgtacttcta ctctaccttc ccaggttctg
6661 gacaatccag ccaacttcaa gtcccatgtt tgttgcctca ggagttcatt acccacttct
6721 gtaacgaaca ggctcccatc gctggggagg ctgccctcct ccactacgtg gaccctgata
6781 cggggcgaaa tttgggagaa ttcaaacttt accctgatgg gtttatgacc tgtgtcccca
6841 atagtgttag tagtggccct caaacccttc ctattaatgg agtctttgtt tttgtttcat
6901 gggtatctag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gattgcggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg
7021 tagcatacta ggggcaggca tacaggctgg tgctgaggct ggtctccagg ctcaacggta
7081 tcagcaggat ctgcagttgc aacaaaattc tttcaagcat gataaggaaa tgttaggcta
7141 ccaagttcag gctagtaatg ctcttttagc taagaatctt aacattagat atgcccttct
7201 gcaggcaggg ggcctatcta gtgctgatgc tgctcgggca gtggctggtg ctcctgtcac
7261 ccgtatagtg gactggaatg gcacgcgcat tgcagcgccc acttcaagca ccactacact
7321 cagatctggt ggttttatgg ctgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctgga caggataacc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgaggcctgt ttctcctttt cacagtgatg ctttgagaac
7501 cgtttgggtt acaccacccg gttcaacatc aacttcatct gtgcaatcta gtttctatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaataaa attttgtaat
7621 aggatgccag tgggcaccat attcagattt gattttaatt ggattgtttt aattaaaatt
7681 tggctcaatt ggtgtt
//