Typing tool
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Typing tool
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Complete norovirus genomes
| MT372476 | GI.8 | |
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| GI.P8 |
ORF1: 95..5404
ORF2: 5388..7019
ORF3: 7019..7660
LOCUS MT372476 7745 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2010/GI.8[P8]/Baltimore16275, complete
genome.
ACCESSION MT372476
VERSION MT372476.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7745)
AUTHORS Randazzo,W., Johnston,J., Montmayeur,A.M., Tatusov,R.L.,
Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7745
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Baltimore16275"
/isolate="Hu/US/2010/GI.8[P8]/Baltimore16275"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="18-Nov-2010"
/note="genotype: GI.8[P8]"
gene 95..5404
/gene="ORF1"
CDS 95..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23088.1"
/translation="MARIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPARQESPP
KDQRDRPPRTVSEVKRAMKWDVEPEHRESTARAWCDLSKEEKEEIMRNNEKLFDAGGV
TPSTLPSTFERAETNNDVGDQQAVSWSANDGVNIGVSDLTTVHGPFWNMCPLPPLDAR
NNGPAKEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWR
VCYVPNDRQRLTYDQLKELENEPWPYAAVTNNCYEFCCRVMALDDTWLQRRLVSTGKF
NHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLSNC
DWTFMGVVELIVLIAELFDIFWTPPDISSFIASLLPDFHLQGPEDLAKDLVPLILGGI
GLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGIED
AVIDMEVLSSTNVTQLVKDKKLARTYMNVLDNEEERARRLSVRSADPHIVTSVNNLIS
RISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKVGL
VPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGMQF
SSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQMRRAHPGDTNAIKDLY
KKDFTHLKMELAPQGGFDSQGNTPFGKGVMKPTTLNRLLIQATALAMERQDEFQLQGA
TYNFDEDRVAAFTNLARANGLGLISMATLGKKLRGVKSMEGLRNALLGYKIEECDIVW
NTRMYSIKSDGNTVTIKEKQAPTSPQHQAICTATLALSRLRAARALAYASCLQSAVLS
ILQVAGSAVVVSRAVKRMFGTRTEQPMLEGKHKEHNCRVHRAEAAGHGPIGHDGVIER
YGLCESEQEEESTQTIELPTASEEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYK
KIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSSMRK
QRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSRVV
KFGSGWGFWVSSTVFITTTHVIPPGAKEVFGESISNVAIHRVGEFTQFRFPKKMRPDL
SGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGAN
AKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEGGD
RNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVEGGPSLQ
QVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNALEQVMDTPVAWSFSDACMSLDKTTS
SGYPHHKRKNDDWNGSSFVRELGDQAAHANNMYELGKPMKPVYTAALKDELVKPDKVY
NKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHSK
YKYHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVI
SVKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTD
IEFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDR
NSIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRKIASRVIQEV
KEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7019
/gene="ORF2"
CDS 5388..7019
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23089.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGSPYHAFDSPAPLGFPDFGNCDLH
MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
gene 7019..7660
/gene="ORF3"
CDS 7019..7660
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23090.1"
/translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
VRISAPTSSAITLKSGGFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMVSRTSQWVESQ
NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat taccgttgct gatgtcagca ataacaatgc
61 tagcaccaac aatgaaaata ttgggtcccg ccttatggcg aggatccgtg ggcgcatagg
121 cccacaacgt ggtgaaacaa ctacaaagat taaggatgcc aatatggcac ttgacctgct
181 acgccggtca caaacaccct ccccagctcg acaagagagc ccccccaagg atcagagaga
241 ccgtcctcca cgaaccgttt cagaggttaa aagggccatg aagtgggatg ttgaaccaga
301 acaccgggaa agtacagcaa gagcctggtg cgatctctcg aaggaagaaa aagaggagat
361 aatgcgcaat aatgaaaagt tatttgatgc tgggggagtc actccatcaa ctctacccag
421 cacatttgaa agggctgaaa caaacaatga tgttggtgac caacaagctg tatcatggtc
481 tgctaatgat ggggtgaata ttggcgttag tgatctgacc actgtccatg gaccattttg
541 gaatatgtgc cccctcccac cattggacgc tcgcaataat ggtcctgcta aagagcccct
601 cataggggat atgatagagt tctatgaagg ccacatattc cactatgcca tttatatagg
661 gcaaggtaag actattgggg tccactcgcc acaggctgct ttttccatac ccagaataac
721 catccaccct ttggtggctt ggtggcgcgt gtgttatgtt cccaatgatc gtcaacgcct
781 cacctatgat caacttaaag aattggagaa tgaaccatgg ccatatgccg ctgttactaa
841 caactgctat gaattttgtt gtagagtgat ggcgttagat gacacttggc tccaaaggag
901 actggttagc actggaaagt tcaaccaccc cacacaggat tggtcacaag ataccccaga
961 cttccatcaa gactcgaagt tagaaatggt gagagatgct gtattgtcag ccattaacgg
1021 tctcgtgtca caacccttca aaaacattct ttcaaagatc aaaccattaa atgtgctcaa
1081 tcttttatca aactgtgatt ggaccttcat gggggttgta gagctgatcg tcctcatagc
1141 agaattattc gacatatttt ggactccacc agatatctcg agctttattg catcgctatt
1201 gccagatttt catcttcaag gcccagagga cttagccaag gacctggtcc cactcatact
1261 aggtggcatt ggcctagcaa ttggctttac aagagataag ataacaaaag tgatgaagag
1321 tgccgttgat ggtctgcggt cagcgacaca gcttgggcag tatggattag aaatattctc
1381 aatcataaag aaatacttct ttggaggtga ccagacagaa aagaccctcc ggggcatcga
1441 ggatgcagtg atagacatgg aggtgttgtc cagcaccaac gtaacacaat tggtcaagga
1501 caagaagttg gccagaactt acatgaatgt actggataat gaggaagaaa gggctagaag
1561 actctcagtc cgcagtgctg acccacacat agtaacctca gtcaacaatt tgatatcccg
1621 catttcaatg gcaagatcag ccctggccaa ggcccaagca gagatgacgt cccgcccacg
1681 cccagtggtc ataatgatgt gtggtccccc tggcattggg aaaacgaaag ctgctgagca
1741 tctggcgggc cgattggctg ccgaaataag accaggggga aaggtcggtc ttgtgccgcg
1801 agagtccata gaccactggg acggttatca tggtgaggac gttctgctct gggatgatta
1861 tggtatgtca aaaataacag aagattgcaa taaattgcaa gccatagctg acactgcacc
1921 actgtcactc aattgtgaca ggatagaaaa caaaggcatg cagttctcct ctgatgcaat
1981 aattattacc accaatgctc ctggtccagc tccagttgac tttgttaacc tgggtcctgt
2041 gtgcaggcgg gtagactttt tagtatactg ctctgctcca gaaattgaac aaatgcggag
2101 ggcccaccca ggtgacacta atgctattaa ggacctgtac aagaaagatt tcacgcacct
2161 caagatggaa ttagctccac aaggtggctt tgatagccag ggcaacacgc cgtttggaaa
2221 aggtgttatg aagcccacaa ccctcaatag gctattgatc caggccacag cattagccat
2281 ggagcggcaa gatgagtttc agcttcaagg ggccacctac aattttgacg aggatagggt
2341 ggccgccttc accaacttag cacgcgccaa tggcctgggg ctcataagca tggcaacatt
2401 gggcaagaaa ttgaggggtg tcaaatcaat ggaggggcta cgcaatgcac tattgggcta
2461 taaaatagaa gaatgtgaca tagtctggaa caccagaatg tactctatca agagtgacgg
2521 gaataccgtc acaattaaag agaagcaggc accaacctcg ccccaacacc aggctatctg
2581 tacggccacc ctcgcgctct cccggttgcg ggctgctagg gcccttgcat atgcttcttg
2641 cttacagagt gctgtgctgt caatactcca ggtggctgga tccgctgtgg tggtgagcag
2701 ggccgttaag cgtatgtttg gtacgcgtac cgaacagcct atgctagaag gtaagcacaa
2761 ggagcataat tgcagagtgc accgagctga ggcagccggc catggcccca ttggccacga
2821 tggggtcatt gaacgctatg gcctgtgtga gagtgaacaa gaggaggaaa gcacccagac
2881 aatagaacta cccactgcca gtgaggaggg caagaacaaa ggtaagacca agaagggtcg
2941 tgggcgaaag tctaatttca atgccttctc cagacgcggc cttagtgatg aggagtatga
3001 ggagtacaag aaaatcaggg aggagaaaag tggcaactac agtatacaag agtaccttga
3061 agatcgacaa cgctacgagg aagagcttgc tgaagtgcag gcgggcggag atggcggaat
3121 aggtgaaact gaggcagaaa tccgccatcg ggtcttctat aaatcaaaat ctagtatgag
3181 gaaacaacgc caagaagaac ggcgtcagct agggctcgtg agcggcaccg agatcagaaa
3241 gcgcaaaccc atagactgga ccccccccaa gaacgattgg tcagaggaca ctagaacagt
3301 caattatgat gaacatatca gttttgaagc accaccctca atctggagta gagtggtaaa
3361 atttggtagt ggttggggtt tctgggttag ctcaacagtg ttcatcacca cgacccatgt
3421 cataccacct ggggccaagg aagtttttgg tgaaagcatc agtaatgtgg ctatccatag
3481 agtcggtgaa ttcactcagt ttcgcttccc taaaaagatg agacctgatc tctctggtat
3541 ggtgctagag gaaggttgtc cagaaggcac ggtgtgcacc ataatgataa agagagactc
3601 tggtgagttg ttaccacttg ctgttcgcat gggtgcagtg gcctcaatga aaatccaagg
3661 aaagctcatg catggacaat caggaatgct gcttactggc gccaatgcca aaggcatgga
3721 cctcgggacc atacccggtg actgtggggc gccttacgtc cacaaaaggg gtaacgattg
3781 ggttgtttgc ggagtccatg cagctgccac aaaatcaggt aacactgtag tttgtgctat
3841 acaaggtggt gagggtgaag ccacgctaga gggtggcgac cgcaataagg gtcattatgc
3901 aggacaccca atattaagat acgggaatgg cccttcactc tcaactaaaa caaagttttg
3961 gaagtcaacc ccacaacccc tacctccagg tacttatgaa ccagcttacc tcggaggtag
4021 agaccccagg gtcgaagggg gcccatcact acaacaagtt ctaagggacc agctaaaacc
4081 atttgctgaa cctcgaggca gattacctga ggcggggttg ctagaagccg cagttgagac
4141 agtcaccaat gcacttgaac aggtcatgga tacaccagtg gcatggagtt tcagtgatgc
4201 ttgcatgtct ttggataaaa caactagctc tggctatccc caccataaga ggaagaatga
4261 tgattggaat ggaagttcat tcgtgcggga gctgggagac caagcagccc acgccaataa
4321 catgtacgaa cttggcaaac ccatgaagcc cgtgtacaca gcagccctca aggacgagct
4381 tgttaaacca gataaggtct acaataaaat caagaagaga ctgctttggg gagctgacct
4441 tggtactgtc atacgtgctg ctagggcctt tggaccattc tgtgaggcca taaagccaca
4501 tgtgatcaag ttgcctatca aagtgggcat gaatgccata gaagatggcc ctttgatata
4561 tgcagaacat tctaaataca agtaccatta tgatgctgat tacactgctt gggactcaac
4621 gcaaaacaga gagatcatga tggagtcctt caatatcatg tgcaagctca cagccaaccc
4681 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
4741 ttatgtaatc agtgttaagg atggtctgcc atctggcttt ccatgcacct cacaagttaa
4801 cagcattaac cactggatca tgaccctatg tgcactgtca gaggtcactg gcttatcccc
4861 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
4921 tgacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
4981 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
5041 cttccttcgt cgcacaattt cgaaggacgc tattgggtat caaggtcgac ttgaccgcaa
5101 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc catttgagac
5161 tctggtgcca cactcacaaa gaaaagttca actgatatcc ctactgggtg aggccgccct
5221 acatggtgaa aaattctaca ggaagatagc cagtagggtc atccaagaag ttaaggaagg
5281 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
5341 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
5461 caaatacagc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
5521 ccgccggtca ggtaaatatg attgacccct ggataatgaa taattttgta caggctcccc
5581 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
5641 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtataat ggttgggttg
5701 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagatcattg
5761 tgtgctgcat accgccgggc ttttcttctc aatctatttc tattgctcaa gctacaatgt
5821 tcccacatgt tatagctgat gttagagtgt tagaacctat tgatgtgccc ttggatgatg
5881 ttagaaatgt cctttttcat aataatgata acccccaaac aatgagattg ctttgcatgt
5941 tgtacacacc ccttcggtct ggtggcacat cttcaggtac agatcctttt gtcattgctg
6001 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
6061 tcgagcaaag aactaagcca ttcagtgtac ccaatatccc tatgaatctg atgtccaatt
6121 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
6181 agtttcagaa tggtcgagtc actttagatg gacagctgca gggtaccacc acagtttcag
6241 ctgcgtgtgt ggcaaggatg aggggacgca tttttaataa taatggcaat tatggtgtga
6301 acctgactga attggatggc agtccctatc atgcctttga tagcccggct cctttaggtt
6361 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaat cccaatgagt
6421 tgtcctctgg agacccttct ggcaaagtgg tcatccactc ctacgatgcc acttttgccc
6481 cccatcttgg tactgtcaaa ctggagaatg atgatgagtt agctcggttt gtgggtaagg
6541 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
6601 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
6661 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
6721 caaaagtccc atgtacactt cctcaagaat tcgtttcaca ttttgttaat gaacaggccc
6781 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacac cgtaatcttg
6841 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
6901 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
6961 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtctcagg agatcataat
7021 ggcccaggct gtcttgggag ccattgctgc gaccgcagca ggaagtgctg tgggagcggg
7081 tattgaagct ggcacacagg ccgccctaca acaccaaagg tatcaacagg atttaaatat
7141 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
7201 tgctttattg caaagaaatt tggctacaag atataatttg ctgagtgcag caggcttgtc
7261 gtctgcagat gctgctagaa tgatagcagg tgctccacca actaaagtag tggattggaa
7321 tggagtcaga atatctgccc ccacatcaag tgcaataacc ctaaaatctg gtggttttat
7381 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcatag acaacccaaa
7441 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg agtctcaaaa
7501 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
7561 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
7621 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
7681 gcattatatt cagattggct tttgattata attaatttaa tttggctgat tagaaattta
7741 atgtt
//