Typing tool
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Typing tool
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Complete norovirus genomes
| MT372470 | GI.3 | |
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| GI.P3 |
ORF1: 95..5404
ORF2: 5388..7019
ORF3: 7019..7666
LOCUS MT372470 7763 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2015/GI.3[P3]/Callao0948, complete
genome.
ACCESSION MT372470
VERSION MT372470.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7763)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7763
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0948"
/isolate="Hu/US/2015/GI.3[P3]/Callao0948"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="09-Oct-2015"
/note="genotype: GI.3[P3]"
gene 95..5404
/gene="ORF1"
CDS 95..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23079.1"
/translation="MARIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPSRKESPP
KGQRDRPPRTASEVKKVMGWDVEPEQQESTAKAWCDLTREEKEEIMRNNEKLFDAGGI
TPSTLPSTFERADPIDNPSEQQPVTWSASGGVDIGVSELTTVRGPFWNMCPLPPLDAR
NNGPANEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLAAWWR
VCYVPTNQQRLTYDQLKELENEPWPYASITNNCYEFCCRVMALDDTWLERKLVCTGKF
NHPAQDWSQDTPDFHQDTKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLSNC
DWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPEFHLQGPEDLAKDLVPLILGGI
GLAIGFTRDKVTKLMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTEKTLRGIED
AVIDMEVLSSTNVTQLVKDKNLARTYMNVLDNEEEKARKLSVRNADPHIVTSVNNLIS
RISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLANEIRPGGKVGL
VPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGMQF
SSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQMRRTHPGDANAIKDLY
KKDYSHLKMELAPQGGFDSQGNTPFGKGTMKPTTLNRLLIQATALAMERQDEFQLQGA
VYNFDEDRVSAFTNLARANGLGLLSMATLGKRLRSVKSMEGLRNALVGYKIGECDIIW
NTRVYSIKSDGSTVTIKEKQAPTSPQSQAISTATLALSRLRAARALAYASCLQSAVLS
ILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRVHRAEAAGHGPIGHDGIIER
YGLCESEQEEEGEQTVELPTASKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYK
KIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRK
QRQEERRQLGLVTGSEIRKRKPIDWTPPKNDWSEDTRTVNYDENISFEAPPSIWSRVV
KFGSGWGFWVSSTVFITTTHVIPPGAKEIFGEDLSNVAIHRVGEFTQFRFSKKMRPDL
TGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGAN
AKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAIQGGDGEATLEGGG
QNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVEGGPSLQ
QVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQTMDTPVAWSYNDACMSLDKTTS
SGHPHHKKKNDDWNGNSFVRELGDQAAHANSMYELGKPMKPVYTAALKDELVKPDKVY
TKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAK
YKYHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVI
SVKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTD
VEFDPARLTQVLKEYGLKPTRPDKTEGPIVVKQHVDGLVFLRRTISKDAIGYQGRLDR
NSIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRKIAGRVIQEV
KEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7019
/gene="ORF2"
CDS 5388..7019
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23080.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEASTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVRVLLAGNAFTAGKIIISCVPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDSTPTMRLICMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFNFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIRSMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGTVYHATNGEGLNLTEIDGTPYHAFESPAPIGFPDLGDCDWH
INASPATAFTNGSIIQRLDVVQDSTFAPHLGTIHYANANYDANVSLICSLEWLSPPSN
GVPKANPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGSDGLSVPCTI
PQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQTL
PINGVFTFISWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7019..7666
/gene="ORF3"
CDS 7019..7666
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23081.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARMVVGAPATRVIDWNG
TRISAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSASSRVADWVSS
QNSSRSSLGPYHPNALQTTWVTPPGSSSTSTISSVSTVPRYFNTDRLPLFANMRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgataaca ttggatcccg ccttatggcg aggatccgtg ggcgtatagg
121 cccacaacgt ggtgaaacaa ccacaaaaat aaaagatgcc aatatggcac ttgacctgct
181 acgccggtca caaacaccct ccccatcccg gaaagagagc ccccccaagg gccagagaga
241 ccgcccccct cgaaccgctt ctgaggtgaa gaaagtgatg gggtgggatg ttgaaccaga
301 acaacaggaa agtacggcta aggcatggtg cgacctcacg cgggaagaga aggaggagat
361 aatgcgcaat aatgaaaagc tcttcgacgc tggaggaatc accccatcaa ccttacctag
421 cacgtttgag agggccgacc cgattgacaa ccccagtgaa cagcaacctg taacatggtc
481 cgctagtggt ggggtcgata ttggtgtcag tgaattgacc accgttcgtg gtccattttg
541 gaacatgtgc cccctcccac cattggatgc tcgaaataat ggccccgcta atgagcccct
601 cataggggac atgatagagt tctatgaagg ccatatattc cactatgcca tctacattgg
661 acaaggtaag accattgggg ttcactcacc gcaagcggct ttctccatac caagaataac
721 catccaccct ctagctgcct ggtggcgcgt gtgctatgtc ccaactaacc aacagcgcct
781 tacttatgac cagcttaaag aactggagaa tgagccatgg ccttacgctt ccatcacaaa
841 caattgttac gagttctgct gcagggtaat ggcacttgat gacacgtggc ttgagagaaa
901 gttggtctgc actggaaaat tcaaccaccc cgcacaagac tggtcacagg atacccctga
961 ttttcaccaa gacacgaagc ttgagatggt aagagatgcc gtgctatcag ccattaatgg
1021 ccttgtgtca caacccttca aaaacatcct gtcaaagatt aagccattaa atgttctcaa
1081 tcttttgtca aattgtgatt ggactttcat gggggttgta gagttggtcg tgctcctagc
1141 ggagttgttc gatgtgttct ggaccccacc agatatctca agcttcattg cctcactact
1201 acctgaattt catctacagg ggccagaaga cctagccaaa gacctggtcc ctctcattct
1261 aggtggtata ggcctggcta ttggctttac aagagataaa gtgacaaaat tgatgaagag
1321 cgctgtcgat gggctgcgat cagcaacaca gctcgggcag tacggactgg aagtgttctc
1381 aataatcaag aaatatttct ttggcgggga ccaaacggaa aagaccttgc ggggtataga
1441 ggatgcagtg atagatatgg aggtattgtc cagcaccaat gtgacacagt tggttaaaga
1501 taagaatttg gccagaactt atatgaacgt gctggataat gaggaggaaa aagcaaggaa
1561 actttcggtc cgtaatgctg acccgcacat agtgacctca gtcaacaacc tgatatcacg
1621 catatctatg gcaaggtcag ccttggctaa ggcccaggct gagatgactt ctcgtccacg
1681 cccagtggtc ataatgatgt gtggcccccc cggcatcgga aaaaccaagg ccgccgaaca
1741 tctggccggc cgattggcga acgaaatcag accgggaggt aaggttgggc ttgtgccccg
1801 ggaatccata gaccactggg acggatacca tggcgaggat gtcctgctat gggatgacta
1861 tggcatgtca aagataacag aggactgtaa caagttacaa gccatagctg acactgcacc
1921 cctatcatta aattgtgaca ggatagagaa caaaggcatg caattttcct cagatgcaat
1981 aattataacc actaacgccc ctggtccggc cccagtggat tttgtcaatc tgggccctgt
2041 gtgcaggcga gtggacttct tagtctattg ttctgcccct gaaattgaac aaatgaggag
2101 aacccaccct ggtgatgcca atgccatcaa ggacctatat aaaaaggact attcacacct
2161 aaaaatggaa ttagccccgc aaggtggctt tgacagccag ggcaatacgc catttgggaa
2221 gggcacaatg aaacccacga ccctcaatag actgctcatc caggcaactg cattagctat
2281 ggaacggcaa gatgagttcc aactccaagg ggctgtttat aactttgatg aagacagggt
2341 gtccgccttc acgaacctgg cccgtgctaa tggcttgggg ctcttgagca tggcaacatt
2401 aggtaaaaga ctcagaagtg tcaagtctat ggagggcctg cgcaacgcac tagtgggcta
2461 caaaatagga gagtgtgata taatctggaa caccagggtg tattcaatta aaagtgatgg
2521 tagcactgtc acaatcaagg aaaaacaagc tccaacctca cctcaaagcc aggccattag
2581 cacagccact cttgcactct ccagactgcg ggctgctaga gctcttgcct atgcctcctg
2641 cctacagagt gcagtgctgt caatacttca agttgctggc tctgccctgg tggtgagtag
2701 agctgtgaaa cgcatgtttg gcacgcgcac tgaacaacct atattagaag gcaagcacaa
2761 agaacacaac tgcagggtgc accgtgcaga ggcagctggc catggtccta ttggacatga
2821 tgggatcatt gaacgctatg gtctttgtga gagtgaacaa gaagaagaag gcgagcaaac
2881 agttgagtta cccactgcca gtaaggaagg taaaaacaag ggtaaaacca aaaagggccg
2941 tggacgcaag tccaatttca acgctttctc aagacgtggt ctcagtgatg aagagtatga
3001 agaatacaaa aagatcagag aagaaaagag tggtaactac agcatccagg agtacctcga
3061 ggatcgccaa cgctatgagg aagaacttgc cgaagtgcag gctggtgggg atggtggaat
3121 tggtgagact gaggcagaga ttcgccatcg ggttttctat aaatcaaaat ccggcatgag
3181 aaaacaacgc caagaagaac ggcgccagtt aggcctcgtc accggttctg agatccgcaa
3241 acgcaagccc atagattgga cccctcctaa gaatgattgg tcagaagaca ccagaactgt
3301 caactatgat gaaaacatca gctttgaagc ccccccctca atttggagta gggtagtgaa
3361 atttgggagt ggctggggct tttgggtgag ctcaacagtg ttcataacta caacccatgt
3421 cataccacct ggggccaaag aaatcttcgg tgaagacctc agcaatgtgg ccatccacag
3481 ggttggcgag ttcactcagt tccgcttctc caaaaagatg agacctgacc tcaccggtat
3541 ggttttagaa gaaggttgcc cagaaggaac agtgtgtacc ataatgatca agagagactc
3601 tggtgagcta ctgccacttg ccgttcggat gggagcagtg gcatcaatga agatccaagg
3661 taagcttatg catggacaat caggaatgtt actcaccggt gctaatgcta aaggcatgga
3721 ccttggaacc atacctggtg attgtggggc accctatgtt cacaagaggg ggaacgattg
3781 ggtagtctgt ggagtgcacg cagctgctac aaaatcaggc aacactgtag tatgtgccat
3841 acagggtggt gatggtgaag ccacgctaga aggcggcggt cagaataagg gtcactatgc
3901 agggcacccg atactaaggt atgggaatgg cccttcacta tcaactaaaa caaagttctg
3961 gaagtcaacc ccccagccct tgccccctgg tacatatgag ccagcttacc ttggtggcag
4021 agaccccaga gttgaagggg gcccatcctt gcagcaagtg ttaagggacc agctaaaacc
4081 atttgccgag cctcgtggca gattgcccga agcgggcttg ttagaagccg cagttgaaac
4141 ggtcaccaac gcaattgaac aaaccatgga cacaccagtg gcatggagct acaatgatgc
4201 ttgcatgtcc ttggacaaga caactagttc tggccacccc caccataaga agaaaaatga
4261 tgattggaat gggaattcat ttgtgaggga attaggcgac caggcggcgc atgccaacag
4321 catgtatgaa ctcggcaagc ccatgaaacc tgtgtacaca gcagccctaa aggatgagct
4381 agtcaaacca gacaaggtgt acacgaaaat caaaaagaga ttgctttggg gcgcggacct
4441 tggcaccgtc attcgcgctg ctagagcatt tgggccgttc tgtgaggcca taaagcccca
4501 tgtgatcaaa ttgcctatca aagtgggtat gaatgctata gaggatggtc ctttgattta
4561 cgcagagcat gccaaatata agtaccatta tgatgctgac tacacagctt gggactcaac
4621 acaaaacaga gagatcatga tggaatcctt caatatcatg tgtaagctca cagccaaccc
4681 ctccttggcc gcagtggtgg cacaagacct actctctcca tctgaaatgg atgttggcga
4741 ctatgtgatc agtgtcaaag atggactgcc gtctggcttt ccatgcactt cacaggtgaa
4801 cagcattaac cactggatcc taaccctatg tgcattatca gaagtcaccg gcctatcccc
4861 agatgtgata caatcacaat cctacttctc attttatggt gatgatgaaa tagtctcaac
4921 agatgtagaa tttgacccag caagattgac acaagtgctg aaggaatatg gtttgaagcc
4981 cactagacct gacaaaactg agggtccaat cgtcgtcaaa caacacgttg atggcctggt
5041 cttcctccgg cgtaccatct ctaaggatgc cattggatac cagggacggc ttgaccgtaa
5101 ctccattgaa agacagcttt ggtggacccg tggaccaaac cacgaggacc catttgagac
5161 attggtccca cattcacaga gaaaggtcca gttaatatcc ctgctaggtg aagcagcact
5221 ccatggtgaa aagttctaca ggaagatagc tggtagggtc attcaagaag tcaaagaggg
5281 ggggcttgaa atctatatcc ctggctggca ggccatgttc cgctggatgc gattccatga
5341 tctaagtttg tggacagggg accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gttccagagg
5461 ccagtacagc tgaacctata tcaatggaac ctgtggctgg tgctgccaca gcagcagcaa
5521 ccgcaggtca agttaatatg attgacccct ggattatgag taattatgtt caagcccctc
5581 aaggagagtt tacaatttcc cctaataata ctcccggtga catattgttt gatttacaat
5641 taggccccca tttaaaccca ttcctgtcac acttagccca gatgtacaac ggttgggttg
5701 gtaatatgaa agttagggtg ctgcttgctg gtaacgcttt cacagcgggc aaaataataa
5761 ttagttgtgt ccccccgggt tttgcagccc agaatatctc aatagcccaa gctactatgt
5821 tccctcacgt tattgcagat gtgcgggtgc ttgaaccaat tgaggtccca ctagaggatg
5881 ttaggaatgt gcttttccat aataatgatt ctacccctac tatgaggttg atttgcatgc
5941 tttacacccc tcttcgcgct agtggtagct cctctggcac agatccattt gttatagctg
6001 gtcgggtcct cacctgtccc agtcctgact ttaacttttt atttcttgtg ccccccaatg
6061 ttgaacagaa aactaaacca ttcagtgtac ctgaccttcc tctcaatgtt ctctcgaatt
6121 ctagagtccc ctccttgata agatccatga tggtctctca agaccatgga cagatggtac
6181 aattccaaaa tggtagggtc acattggacg gacagctcca aggcaccacc cccacttcag
6241 ctagtcagct ctgcaagatt cgagggacgg tttatcacgc aactaatggt gaagggctta
6301 atttaactga aattgatggc accccctacc atgcatttga aagccctgcc ccaattggct
6361 tccccgattt aggtgattgt gattggcata ttaatgcatc tcctgccact gcctttacaa
6421 atggtagcat tatacaaaga cttgatgtgg tccaggattc cacttttgcc ccccatttag
6481 gtactatcca ttatgccaat gctaattatg atgcaaatgt tagcctgatt tgttcacttg
6541 aatggctttc tcctccaagt aatggtgtcc caaaggcaaa cccatgggcc atccctcggt
6601 atggttcaac tttaactgag gctgcccaat tggccccacc aatatatccc cctggttttg
6661 gtgaagcaat tgttttcttt atgtctgatt ttccaatagc caatggttca gatggcctaa
6721 gtgtcccttg cactatacca caagagtttg tgacccattt cgtcaatgaa caagctccaa
6781 cccgtgggga agctgccctt cttcattatg ttgaccctga tacacaccgc aatctaggtg
6841 aatttaaatt ataccctgaa ggattcatga cctgtgtacc aaattctagt ggcagtggcc
6901 cccaaacact acccatcaat ggggtcttca ccttcatctc ttgggtttcc cgtttttatc
6961 aattaaagcc tgtgggaacg accggaccgg ttcgtaggct cgggatcagg agatcataat
7021 ggcccaagca ataattggag caatagctgc gacggctgct ggcagtgctg taggtgcggg
7081 cattcaggct ggtactgagg ctgcgctcca acatcagcgc ttccagcagg acttgacgtt
7141 gcaaagtaac actttcaaac atgacaagga gatgttagga ttgcaggttg gtgcttctac
7201 tgccctttta caaaatagcc tcaacacacg ttacaacatg cttactaatg ccggcctctc
7261 atcttcggat gcagctcgca tggtggttgg cgcgcccgct acgcgcgtta tagattggaa
7321 tggtaccagg atatcagcac cgcagtccac tgccaccaca ctgaggtctg gcggattcat
7381 gacaatccca actctatata agggcaagca acagcagaaa gctccaactg aaattggttt
7441 gtctaatcca aattatgggt cgtctgcatc ttcaagggtt gctgattggg tttcttctca
7501 gaattcatct cgctcgtcct tgggtccata ccatcccaat gctttacaaa caacatgggt
7561 aacaccaccc ggttcaagtt ctacttctac tatttcttct gtgtctactg tacctagata
7621 tttcaatact gataggttgc ctctattcgc aaatatgagg aaataatttt gtaatatgaa
7681 atgtgggcat catattcaat tggatttaat taattattaa tttggtctaa ttattaattt
7741 ggtttgattt ggaatttgat gtt
//