Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MT372469 | GI.7 | |
|
|---|---|---|---|
| GI.P7 |
ORF1: 95..5401
ORF2: 5385..7001
ORF3: 7001..7648
LOCUS MT372469 7777 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2017/GI.7[P7]/Callao0904, complete
genome.
ACCESSION MT372469
VERSION MT372469.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7777)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7777
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0904"
/isolate="Hu/US/2017/GI.7[P7]/Callao0904"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/geo_loc_name="USA"
/collection_date="29-Nov-2017"
/note="genotype: GI.7[P7]"
gene 95..5401
/gene="ORF1"
CDS 95..5401
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23076.1"
/translation="MAKLKERMSSQRGEGTTKIKNTEMALDLIRRSQTPSPTRSDPPP
KAQRDRPPRTVSEVKQVLGWDDPASKDYGARAWCDLTAEEKKEILDNNERLFDAGGVT
PSTVPSTFERCGAPERVDGCHPVKWSESTGVDLGVDSLTTVTGPVWNMCPLPPIDSRN
NGPASEPRIGDMIEFFEGHIFHYAIYFGQGKTIGVHSPQAAFSIARITIHPMAAWWRV
CYEPTDQQRLSYDQLKELENEPWPYASVTNNCYEFCCRVMSLDDSWLQRKLVTSGRFN
HPTQEWSKETPDFHQDSKLEIVRDAILSAINGLVSQPFKNILSKIKPLNLLSLLSNCD
WTFMGVVELVVLLAELFDIFWTPPDISNFIASLLPDFHLQGPEDLARDLIPLILGGIG
LAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENA
VIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEERARKLSVRSADPHVVTTVNNLISR
ISMARSALAKAQAEMTNRARPVVIMMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLV
PRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIADTAPLTLNCDRIENKGMQFV
SDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEIEQTRRTHPGDTNAIKNLFK
PDFSHLKMEIAPQGGFDNQGNTPFGKGTMKSTTLSRLLIQAVALTMERQDEFQMQGAV
YNFDEDRVTAFTSLARANGLGLLSMAALGKKLRSVNNMEGLRNALKGYKITPCDIVWN
NRTYTIKADGSSVSVTEKQAAATLQQQATSSVTLALSRLRAARALAYASCFQSAVTTI
LQMAGSAVVISRAVKRMFGTHTNQPALEGKPREHNCRVHRAEREGRGPIGHDGIIERY
GLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKK
VREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQ
RQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVK
FGSGWGFWVSSTVFITTTHVIPPDAKEVFGEKLSDIAIHRVGEFTQFRFSKKMRPDLS
GMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANA
KGMDLGTIPGDCGAPYVHKRGNDWIVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQ
NKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQ
VLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLEQIMDTPVPWSFNDACMSLDKTTSS
GYPHHKRKNDDWNGNAFVRELGEQAAHANNMYELGKSVKPVYTAALKDELVKPEKVYT
RIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKY
KYHFDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
VKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDV
EFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRN
SIERQLWWTRGPNHDDPFETLIPHQQRKIQLISLLGEAALHGEKFYRKIANRVIQEVK
EGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLPDYVNDDGV"
mat_peptide 95..1216
/gene="ORF1"
/product="p48"
mat_peptide 1217..2305
/gene="ORF1"
/product="NTPase"
mat_peptide 2306..2905
/gene="ORF1"
/product="p22"
mat_peptide 2906..3325
/gene="ORF1"
/product="VPg"
mat_peptide 3326..3868
/gene="ORF1"
/product="Pro"
mat_peptide 3869..5398
/gene="ORF1"
/product="RdRp"
gene 5385..7001
/gene="ORF2"
CDS 5385..7001
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23077.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG
WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ
LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH
VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQNPSGDQLGTLTWISPLNNSS
RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF
ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FIFSSWVSRYYQLKPVGTAGPARRLGVRRI"
gene 7001..7648
/gene="ORF3"
CDS 7001..7648
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23078.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNFLVGAGLSSADAARSIAGAPVTKIVDWNG
VRIAAPTSTATTLRSGNFMSIPVTPKREPQKLPARSVGLSNPNYDSSTMISRTTQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat taccgctgct gatgtcagca aacaaaatgc
61 taacaccaac aacgaaaaga tcggttctcg ccttatggcg aaactgaaag agcgtatgag
121 ctctcaacgt ggtgaaggaa ccacgaagat caagaacact gaaatggcac tggatctgat
181 acgtaggtcc caaacaccat cgccaacgcg ttcagacccc cctcctaagg cgcaacgcga
241 tcgccctcca aggacagtat cagaagtcaa acaagttttg ggttgggatg accctgccag
301 taaggattat ggggcccgag cgtggtgcga cttaacagct gaagaaaaga aggaaatcct
361 ggacaacaac gagcgcctct ttgacgctgg cggcgtgact ccctcgacag taccaagcac
421 ttttgagagg tgtggtgcac ctgagcgagt cgacggctgc caccccgtca agtggagcga
481 gtccacagga gtggatttgg gagtagattc tctgaccact gttacaggtc cggtatggaa
541 tatgtgcccc cttccaccaa ttgattcacg taacaatggt ccagcaagtg aaccacgtat
601 tggagatatg atagaattct ttgaagggca catattccac tatgccatat attttggcca
661 agggaagacc ataggggtcc actctcctca ggcagctttt tccatagctc gtataactat
721 acaccctatg gcagcatggt ggcgtgtctg ttacgagcca acagatcagc aacgccttag
781 ctatgaccaa ttaaaggaac ttgagaatga accgtggccc tatgcatccg taacgaacaa
841 ttgttacgag ttttgctgcc gtgtcatgtc cttggacgac tcctggctac aacgaaagtt
901 ggtgacatct ggtagattta atcaccccac ccaggaatgg tccaaggaaa cacctgattt
961 ccatcaagac tcaaaattgg aaatagtgag agacgcaata ctatccgcca taaacggcct
1021 ggtctctcaa ccttttaaga atatcctctc aaaaattaaa ccactaaatt tgttgtcttt
1081 gctgtcaaac tgtgactgga cttttatggg ggttgtcgag ctagtagtgc tactggctga
1141 attgtttgac atcttctgga ccccacctga tatctctaat ttcatagcat ctctcctacc
1201 tgacttccac ctgcaagggc cagaggattt ggcaagagac ctgatcccat taatactggg
1261 gggcatcggc ctggctattg gtttcactag agacaagatc acgaaggtta tgaagagcgc
1321 cgttgatggc ctgcgctcag ccacgcagct tggacaatat ggccttgagg tgttctcgat
1381 tataaagaag tacttctttg gtggggatca aactgagaaa actctcaagg gcatagagaa
1441 tgcagtcata gacatggaag tcctgtcgag taccaatgtc acacaattgg tgcgcgacaa
1501 gaaactggct aaaacataca tgaatatcct ggacaatgaa gaggaaaggg caagaaaact
1561 ttcagtgcga agtgctgacc cacatgttgt gacaacagtc aataatctca tttcgcgcat
1621 atctatggcg cgatcagctc ttgccaaggc ccaagctgag atgactaatc gggcacgccc
1681 cgtggtcata atgatgtgtg ggccaccagg tataggaaaa accaaagctg ctgaacacct
1741 ggccaaccgc ctggctggtg agataaggcc aggaggaaaa gtgggcttgg tgcctagaga
1801 atccattgac cattgggatg gctaccatgg ggaagaagtc ctgctgtggg atgattacgg
1861 catgtccaag ataacagagg attgcaataa attacaagcc atagctgaca ctgccccact
1921 tacactcaat tgtgacagaa tagagaacaa gggcatgcaa ttcgtgtcag atgcaataat
1981 aataacaaca aatgcccccg ggccagcccc cgtcgacttt gttaaccttg gtccagtatg
2041 tcgacgtgta gacttcctgg tgtattgcac cgcccccgaa attgaacaga ccaggagaac
2101 ccaccctggg gacaccaatg ctatcaagaa tttgttcaaa ccagattttt cccatttaaa
2161 aatggagata gcaccacaag gggggtttga caatcaaggt aacaccccct ttgggaaggg
2221 tactatgaaa tcaaccacac tcagtaggtt actcatccag gcagttgctt tgacaatgga
2281 gagacaagat gaattccaga tgcagggggc agtgtataac tttgatgagg accgggtcac
2341 ggctttcact agcctagccc gggccaacgg actaggactt ttgagtatgg ctgcactcgg
2401 caagaagttg cggagtgtca acaatatgga gggactccgc aacgccctca aagggtacaa
2461 gatcactccg tgtgacattg tgtggaacaa cagaacttac accattaagg cagatggatc
2521 aagtgtgagc gtcacagaaa agcaggcagc tgccactctc cagcaacaag ctaccagctc
2581 ggttactctg gcactttcta ggctacgcgc cgcgcgggcg ttggcgtatg catcatgttt
2641 ccagagcgca gtgaccacca tcttgcaaat ggctgggtct gcagtggtga tcagcagggc
2701 agtcaaacgc atgtttggga cccacaccaa ccagccagcc ctagagggca aacccagaga
2761 acataactgc agggtccacc gagctgaaag agaaggacgt ggccctattg gtcatgatgg
2821 catcatagaa cggtacggcc tgtgtgaaac tgaccaagaa gaagaagaga agatcgagat
2881 ggaagtgcca actgcagaca aagagggtaa gaataaaggc aaaaacaaga aggggcgagg
2941 taggaaaaat aactacaacg ccttttctag acgaggcctg agtgatgagg agtatgaaga
3001 atacaagaag gtcagagaag agaagggtgg taattacagc atccaagaat acctcgagga
3061 ccgccaaaga tatgaagaag agttggctga ggtccaagca ggtggagatg gcgggatcgg
3121 tgaaacagag gcagagatcc gccatcgtgt tttctataaa tccaagagtg gcatgcgaaa
3181 acaacgccaa gaggagcgtc ggcagcttgg gttagtcaca ggcaccgaga tcagaaagcg
3241 caagcccata gattggacac cacccaagaa tgattggtca gaagacacca gacaggtcaa
3301 ttatgatgaa cacatcagct ttgaagcccc accttctatt tggagtagag tagtcaaatt
3361 tggcagtgga tggggctttt gggtaagttc aacagtcttc atcacaacca cacacgtcat
3421 accaccagat gctaaagaag tctttgggga aaaactttca gatatagcaa tacacagagt
3481 tggagagttc acacaattta gattctctaa gaaaatgaga cctgatctta gtggtatggt
3541 ccttgaggag ggttgcccgg agggcacggt gtgcaccata atggtgaaga gagattcagg
3601 tgagctgttg cctctggctg tgcgcatggg agctgttgcg tccatgaaga tacaaggtaa
3661 gctcatgcat ggtcagtctg gcatgctgct aaccggtgca aatgcaaagg gaatggacct
3721 gggcaccatc cctggtgact gtggagctcc atatgtgcat aagagaggaa atgactggat
3781 agtgtgtgga gtgcacgcag ccgcaaccaa gtcgggcaac accgtagtgt gcgcaataca
3841 gtcaggtgaa ggtgaagcaa cccttgaagg gggtggacaa aacaaagggc attatgcagg
3901 ccacccaatc ttaaggtatg gcaatgggcc ctctctctct acaaaaacca aattctggaa
3961 atcaaccccc caaccgctcc cgcctggaac ctatgaacca gcttatctag gtgggcgtga
4021 ccccagagta gacggtggtc catcacttca acaagtccta cgtgaccaac tcaagccttt
4081 tgctgagccc cgtggtaggc tgccagaacc gagcttgctc gaagcggccg tggagactgt
4141 tacaaatgtt ttagaacaaa tcatggacac gcctgtgcct tggagcttca atgacgcctg
4201 tatgtctctt gacaagacca ccagctcagg ttatccgcac cataaacgca agaatgatga
4261 ttggaatggt aatgcgtttg tgcgtgaact tggggaacag gcggctcatg ccaataacat
4321 gtatgaattg ggtaagtcag tcaagccggt ttacacagcg gcactcaaag atgaattagt
4381 gaaacctgaa aaagtgtata caagaattaa aaagagactg ctttggggtg cggatcttgg
4441 cacagtcatc cgggccgctc gagctttcgg cccattctgt gaggcgataa aaccacatgt
4501 gataaaattg ccgatcaagg ttggtatgaa tgcaattgaa gatggccccc tcatatacgc
4561 tgaacacgca aagtacaaat atcactttga tgcagattac acagcctggg actcaactca
4621 gaatagagag atcatgttgg aatctttcaa catcatgtgt aagctcacag ccaatccatc
4681 actggctgct gttgtggcac aggacctact gtctccatca gagatggatg tgggggatta
4741 tgtgatcagt gttaaggatg gcctcccctc agggttccca tgcacctcac aagtgaacag
4801 cataaaccat tggatttaca ccctatgtgc cctatcagag gtcacaggcc tggcccctga
4861 tgttttacaa tcccagtctt acttttcttt ctatggggat gatgagatag tgtcaactga
4921 tgttgagttt gacccaataa agctcaccca ggtgctcaga gagtatggtt tgaagcccac
4981 ccgacctgat aaatcagaag ggcccatcat agttaaacaa cagatagatg ggctggtttt
5041 cctcaggcgc actatatcaa aagacgctgc tggctaccag gggcgtttag atcgcaactc
5101 cattgaaagg caactgtggt ggactcgggg accaaaccat gacgacccct ttgagactct
5161 tataccccat caacagagga agattcagtt gatatccctg cttggtgaag ctgcactcca
5221 tggagagaaa ttttacagga agatagccaa tagggtgata caggaagtta aggagggagg
5281 gcttgagctc tacataccag gttggcaggc catgtttcgc tggatgcgat ttcatgactt
5341 gagcatgtgg acaggagatc gcaatctact gcctgattat gtaaatgatg atggcgtcta
5401 aggacgcccc ctcaaacatg gatggcacca gtggtgccgg tcagctggtt ccagaggtta
5461 atacagctga acctctaccc cttgaaccgg tggtgggcgc cgcaactgcg gctgccactg
5521 ctgggcaggt taatttaata gacccctgga tcatgaataa ttttgtccaa gcccctgaag
5581 gcgagttcac tatctcaccc aacaataccc ccggagatat cttatttgat ttgcgcctgg
5641 ggccacacct taatcctttc ctcctacatt tatcccagat gtataatggt tgggttggga
5701 acatgagagt tagggtcatg cttgcaggga acgcgttctc tgctggtaag atcataattt
5761 gttgtgtccc acctggcttt gaatcccaga acatatcaat tggacaggct actatgttcc
5821 cccatgtcat agctgatgta agagtcctgg agcccataga gatcccactt gatgatgtgc
5881 gcaacgttct gtaccacaca aatgagaacc gcccaaccat gcgattgctc tgcatgttgt
5941 acacgcctct ccgcgccgga ggggcttcat caggcacaga cccttttgtc attgctggcc
6001 gtgtgttgac ttgccctgcc cctgacttta attttctgtt tcttgtgccc cccagtgtag
6061 aacagaaaac caggcaactg actataccca atataccctt gaataatttg gctaactcca
6121 gagtgcctgc aatgataaat aaaatgacag tctctgctga tcagaatcag gtggtccagt
6181 ttcaaaatgg ccgttgcaca cttgaaggac aactcttagg tacaactcct gtttcagcca
6241 accaagttgc ccgcatacgt ggtaaagtct tctctactaa ctccggaacg gggcttaatt
6301 taactgaaac agatggaacc ccctaccatg catttgagag cccggccccc ctcggttttc
6361 ctgacatagg tgattgtgat tggcatgtgt atgcttttaa ggtgaatcaa aatacggggg
6421 atcccatgta cagattggat ataacacaag gaaactcatt tgcgccgcat cttggctcca
6481 ttgagttcac ttctgatcag aacccatcag gagatcaatt aggcacactt acttggatct
6541 cccctctcaa taattcctcc agggttgacc cctggaaaat cccatcatat ggttcaacat
6601 tgactgagtc cactaacctg gcaccgccca tctttccacc aggctttggt gaggccatag
6661 tctacttcat gtcagatttc cctattgtgt caggtaacac tgcccaaatc ccctgcaccc
6721 tgccccaaga gttcatctca tcctttgtgg aacaacaggc acccatccga ggtgaggctg
6781 ctctactgca ttatgtggac ccagacaccc atcgcaattt gggagaattc aaactgtatc
6841 ctgatgggtt catcacttgt gtgccaaaca cgggtggcgg tccccaaaac ctcccttcaa
6901 atggtgtctt tatcttttct tcttgggtct ctagatatta ccaattgaag cctgtgggaa
6961 cagccggtcc ggctaggcgg cttggtgtga gaaggatata atggctcaag ccattatagg
7021 agctattgcc gccaccgctg ctggcagcgc agtgggggca ggaatccaag ctggaactga
7081 ggcagccttg caataccaaa ggttccaaca agaccttact ctgcaggaga attcttttaa
7141 gcatgatgaa agaatgttgg gtttacaaat tgaggggtct aacgctttgc tacaaaagaa
7201 cctttccact cgctataatt ttttagttgg tgcaggtctt tcctcagctg atgccgcaag
7261 gtctattgct ggggccccag tgacaaaaat cgtggactgg aatggggtga gaattgctgc
7321 ccctacatcc actgccacca ctctccgttc tggcaacttc atgagcatac cagttacacc
7381 taaaagggag ccccaaaaat tgccagcacg ttctgtgggc ctctctaatc ctaattatga
7441 ttcatccact atgatttcta ggacaacaca atgggtggaa tcgcaaaatt caatcaggaa
7501 tttgtcacct tttcatagct ctgctttgag gactacttgg gtaacccctc ctggttctac
7561 ttctacttca accttttcta ctgtttcttc ggcgccacga tactttaata ccgagcgcct
7621 tcctttgttc gcaaacaata ggaaatagtt tttgtaatat aatgtgggca tcatattcat
7681 atttggttta ttaattggat taacttgatc aattggatat tttatatttg gtttattaat
7741 tggattaatt tgattaattg gatttgaatt ggatgtt
//