Typing tool
|
Complete norovirus genomes
MT372469 | GI.7 | ||
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GI.P7 |
ORF1: 95..5401 ORF2: 5385..7001 ORF3: 7001..7648LOCUS MT372469 7777 bp RNA linear VRL 28-APR-2020 DEFINITION Norovirus GI isolate Hu/US/2017/GI.7[P7]/Callao0904, complete genome. ACCESSION MT372469 VERSION MT372469.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7777) AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M., Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7777 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="Callao0904" /isolate="Hu/US/2017/GI.7[P7]/Callao0904" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122928" /country="USA" /collection_date="29-Nov-2017" /note="genotype: GI.7[P7]" gene 95..5401 /gene="ORF1" CDS 95..5401 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QJD23076.1" /translation="MAKLKERMSSQRGEGTTKIKNTEMALDLIRRSQTPSPTRSDPPP KAQRDRPPRTVSEVKQVLGWDDPASKDYGARAWCDLTAEEKKEILDNNERLFDAGGVT PSTVPSTFERCGAPERVDGCHPVKWSESTGVDLGVDSLTTVTGPVWNMCPLPPIDSRN NGPASEPRIGDMIEFFEGHIFHYAIYFGQGKTIGVHSPQAAFSIARITIHPMAAWWRV CYEPTDQQRLSYDQLKELENEPWPYASVTNNCYEFCCRVMSLDDSWLQRKLVTSGRFN HPTQEWSKETPDFHQDSKLEIVRDAILSAINGLVSQPFKNILSKIKPLNLLSLLSNCD WTFMGVVELVVLLAELFDIFWTPPDISNFIASLLPDFHLQGPEDLARDLIPLILGGIG LAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENA VIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEERARKLSVRSADPHVVTTVNNLISR ISMARSALAKAQAEMTNRARPVVIMMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLV PRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIADTAPLTLNCDRIENKGMQFV SDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEIEQTRRTHPGDTNAIKNLFK PDFSHLKMEIAPQGGFDNQGNTPFGKGTMKSTTLSRLLIQAVALTMERQDEFQMQGAV YNFDEDRVTAFTSLARANGLGLLSMAALGKKLRSVNNMEGLRNALKGYKITPCDIVWN NRTYTIKADGSSVSVTEKQAAATLQQQATSSVTLALSRLRAARALAYASCFQSAVTTI LQMAGSAVVISRAVKRMFGTHTNQPALEGKPREHNCRVHRAEREGRGPIGHDGIIERY GLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKK VREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQ RQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVK FGSGWGFWVSSTVFITTTHVIPPDAKEVFGEKLSDIAIHRVGEFTQFRFSKKMRPDLS GMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANA KGMDLGTIPGDCGAPYVHKRGNDWIVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQ NKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQ VLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLEQIMDTPVPWSFNDACMSLDKTTSS GYPHHKRKNDDWNGNAFVRELGEQAAHANNMYELGKSVKPVYTAALKDELVKPEKVYT RIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKY KYHFDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS VKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDV EFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRN SIERQLWWTRGPNHDDPFETLIPHQQRKIQLISLLGEAALHGEKFYRKIANRVIQEVK EGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLPDYVNDDGV" mat_peptide 95..1216 /gene="ORF1" /product="p48" mat_peptide 1217..2305 /gene="ORF1" /product="NTPase" mat_peptide 2306..2905 /gene="ORF1" /product="p22" mat_peptide 2906..3325 /gene="ORF1" /product="VPg" mat_peptide 3326..3868 /gene="ORF1" /product="Pro" mat_peptide 3869..5398 /gene="ORF1" /product="RdRp" gene 5385..7001 /gene="ORF2" CDS 5385..7001 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QJD23077.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQNPSGDQLGTLTWISPLNNSS RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV FIFSSWVSRYYQLKPVGTAGPARRLGVRRI" gene 7001..7648 /gene="ORF3" CDS 7001..7648 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QJD23078.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNFLVGAGLSSADAARSIAGAPVTKIVDWNG VRIAAPTSTATTLRSGNFMSIPVTPKREPQKLPARSVGLSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK" ORIGIN 1 gtgaatgatg atggcgtcta acgacgctat taccgctgct gatgtcagca aacaaaatgc 61 taacaccaac aacgaaaaga tcggttctcg ccttatggcg aaactgaaag agcgtatgag 121 ctctcaacgt ggtgaaggaa ccacgaagat caagaacact gaaatggcac tggatctgat 181 acgtaggtcc caaacaccat cgccaacgcg ttcagacccc cctcctaagg cgcaacgcga 241 tcgccctcca aggacagtat cagaagtcaa acaagttttg ggttgggatg accctgccag 301 taaggattat ggggcccgag cgtggtgcga cttaacagct gaagaaaaga aggaaatcct 361 ggacaacaac gagcgcctct ttgacgctgg cggcgtgact ccctcgacag taccaagcac 421 ttttgagagg tgtggtgcac ctgagcgagt cgacggctgc caccccgtca agtggagcga 481 gtccacagga gtggatttgg gagtagattc tctgaccact gttacaggtc cggtatggaa 541 tatgtgcccc cttccaccaa ttgattcacg taacaatggt ccagcaagtg aaccacgtat 601 tggagatatg atagaattct ttgaagggca catattccac tatgccatat attttggcca 661 agggaagacc ataggggtcc actctcctca ggcagctttt tccatagctc gtataactat 721 acaccctatg gcagcatggt ggcgtgtctg ttacgagcca acagatcagc aacgccttag 781 ctatgaccaa ttaaaggaac ttgagaatga accgtggccc tatgcatccg taacgaacaa 841 ttgttacgag ttttgctgcc gtgtcatgtc cttggacgac tcctggctac aacgaaagtt 901 ggtgacatct ggtagattta atcaccccac ccaggaatgg tccaaggaaa cacctgattt 961 ccatcaagac tcaaaattgg aaatagtgag agacgcaata ctatccgcca taaacggcct 1021 ggtctctcaa ccttttaaga atatcctctc aaaaattaaa ccactaaatt tgttgtcttt 1081 gctgtcaaac tgtgactgga cttttatggg ggttgtcgag ctagtagtgc tactggctga 1141 attgtttgac atcttctgga ccccacctga tatctctaat ttcatagcat ctctcctacc 1201 tgacttccac ctgcaagggc cagaggattt ggcaagagac ctgatcccat taatactggg 1261 gggcatcggc ctggctattg gtttcactag agacaagatc acgaaggtta tgaagagcgc 1321 cgttgatggc ctgcgctcag ccacgcagct tggacaatat ggccttgagg tgttctcgat 1381 tataaagaag tacttctttg gtggggatca aactgagaaa actctcaagg gcatagagaa 1441 tgcagtcata gacatggaag tcctgtcgag taccaatgtc acacaattgg tgcgcgacaa 1501 gaaactggct aaaacataca tgaatatcct ggacaatgaa gaggaaaggg caagaaaact 1561 ttcagtgcga agtgctgacc cacatgttgt gacaacagtc aataatctca tttcgcgcat 1621 atctatggcg cgatcagctc ttgccaaggc ccaagctgag atgactaatc gggcacgccc 1681 cgtggtcata atgatgtgtg ggccaccagg tataggaaaa accaaagctg ctgaacacct 1741 ggccaaccgc ctggctggtg agataaggcc aggaggaaaa gtgggcttgg tgcctagaga 1801 atccattgac cattgggatg gctaccatgg ggaagaagtc ctgctgtggg atgattacgg 1861 catgtccaag ataacagagg attgcaataa attacaagcc atagctgaca ctgccccact 1921 tacactcaat tgtgacagaa tagagaacaa gggcatgcaa ttcgtgtcag atgcaataat 1981 aataacaaca aatgcccccg ggccagcccc cgtcgacttt gttaaccttg gtccagtatg 2041 tcgacgtgta gacttcctgg tgtattgcac cgcccccgaa attgaacaga ccaggagaac 2101 ccaccctggg gacaccaatg ctatcaagaa tttgttcaaa ccagattttt cccatttaaa 2161 aatggagata gcaccacaag gggggtttga caatcaaggt aacaccccct ttgggaaggg 2221 tactatgaaa tcaaccacac tcagtaggtt actcatccag gcagttgctt tgacaatgga 2281 gagacaagat gaattccaga tgcagggggc agtgtataac tttgatgagg accgggtcac 2341 ggctttcact agcctagccc gggccaacgg actaggactt ttgagtatgg ctgcactcgg 2401 caagaagttg cggagtgtca acaatatgga gggactccgc aacgccctca aagggtacaa 2461 gatcactccg tgtgacattg tgtggaacaa cagaacttac accattaagg cagatggatc 2521 aagtgtgagc gtcacagaaa agcaggcagc tgccactctc cagcaacaag ctaccagctc 2581 ggttactctg gcactttcta ggctacgcgc cgcgcgggcg ttggcgtatg catcatgttt 2641 ccagagcgca gtgaccacca tcttgcaaat ggctgggtct gcagtggtga tcagcagggc 2701 agtcaaacgc atgtttggga cccacaccaa ccagccagcc ctagagggca aacccagaga 2761 acataactgc agggtccacc gagctgaaag agaaggacgt ggccctattg gtcatgatgg 2821 catcatagaa cggtacggcc tgtgtgaaac tgaccaagaa gaagaagaga agatcgagat 2881 ggaagtgcca actgcagaca aagagggtaa gaataaaggc aaaaacaaga aggggcgagg 2941 taggaaaaat aactacaacg ccttttctag acgaggcctg agtgatgagg agtatgaaga 3001 atacaagaag gtcagagaag agaagggtgg taattacagc atccaagaat acctcgagga 3061 ccgccaaaga tatgaagaag agttggctga ggtccaagca ggtggagatg gcgggatcgg 3121 tgaaacagag gcagagatcc gccatcgtgt tttctataaa tccaagagtg gcatgcgaaa 3181 acaacgccaa gaggagcgtc ggcagcttgg gttagtcaca ggcaccgaga tcagaaagcg 3241 caagcccata gattggacac cacccaagaa tgattggtca gaagacacca gacaggtcaa 3301 ttatgatgaa cacatcagct ttgaagcccc accttctatt tggagtagag tagtcaaatt 3361 tggcagtgga tggggctttt gggtaagttc aacagtcttc atcacaacca cacacgtcat 3421 accaccagat gctaaagaag tctttgggga aaaactttca gatatagcaa tacacagagt 3481 tggagagttc acacaattta gattctctaa gaaaatgaga cctgatctta gtggtatggt 3541 ccttgaggag ggttgcccgg agggcacggt gtgcaccata atggtgaaga gagattcagg 3601 tgagctgttg cctctggctg tgcgcatggg agctgttgcg tccatgaaga tacaaggtaa 3661 gctcatgcat ggtcagtctg gcatgctgct aaccggtgca aatgcaaagg gaatggacct 3721 gggcaccatc cctggtgact gtggagctcc atatgtgcat aagagaggaa atgactggat 3781 agtgtgtgga gtgcacgcag ccgcaaccaa gtcgggcaac accgtagtgt gcgcaataca 3841 gtcaggtgaa ggtgaagcaa cccttgaagg gggtggacaa aacaaagggc attatgcagg 3901 ccacccaatc ttaaggtatg gcaatgggcc ctctctctct acaaaaacca aattctggaa 3961 atcaaccccc caaccgctcc cgcctggaac ctatgaacca gcttatctag gtgggcgtga 4021 ccccagagta gacggtggtc catcacttca acaagtccta cgtgaccaac tcaagccttt 4081 tgctgagccc cgtggtaggc tgccagaacc gagcttgctc gaagcggccg tggagactgt 4141 tacaaatgtt ttagaacaaa tcatggacac gcctgtgcct tggagcttca atgacgcctg 4201 tatgtctctt gacaagacca ccagctcagg ttatccgcac cataaacgca agaatgatga 4261 ttggaatggt aatgcgtttg tgcgtgaact tggggaacag gcggctcatg ccaataacat 4321 gtatgaattg ggtaagtcag tcaagccggt ttacacagcg gcactcaaag atgaattagt 4381 gaaacctgaa aaagtgtata caagaattaa aaagagactg ctttggggtg cggatcttgg 4441 cacagtcatc cgggccgctc gagctttcgg cccattctgt gaggcgataa aaccacatgt 4501 gataaaattg ccgatcaagg ttggtatgaa tgcaattgaa gatggccccc tcatatacgc 4561 tgaacacgca aagtacaaat atcactttga tgcagattac acagcctggg actcaactca 4621 gaatagagag atcatgttgg aatctttcaa catcatgtgt aagctcacag ccaatccatc 4681 actggctgct gttgtggcac aggacctact gtctccatca gagatggatg tgggggatta 4741 tgtgatcagt gttaaggatg gcctcccctc agggttccca tgcacctcac aagtgaacag 4801 cataaaccat tggatttaca ccctatgtgc cctatcagag gtcacaggcc tggcccctga 4861 tgttttacaa tcccagtctt acttttcttt ctatggggat gatgagatag tgtcaactga 4921 tgttgagttt gacccaataa agctcaccca ggtgctcaga gagtatggtt tgaagcccac 4981 ccgacctgat aaatcagaag ggcccatcat agttaaacaa cagatagatg ggctggtttt 5041 cctcaggcgc actatatcaa aagacgctgc tggctaccag gggcgtttag atcgcaactc 5101 cattgaaagg caactgtggt ggactcgggg accaaaccat gacgacccct ttgagactct 5161 tataccccat caacagagga agattcagtt gatatccctg cttggtgaag ctgcactcca 5221 tggagagaaa ttttacagga agatagccaa tagggtgata caggaagtta aggagggagg 5281 gcttgagctc tacataccag gttggcaggc catgtttcgc tggatgcgat ttcatgactt 5341 gagcatgtgg acaggagatc gcaatctact gcctgattat gtaaatgatg atggcgtcta 5401 aggacgcccc ctcaaacatg gatggcacca gtggtgccgg tcagctggtt ccagaggtta 5461 atacagctga acctctaccc cttgaaccgg tggtgggcgc cgcaactgcg gctgccactg 5521 ctgggcaggt taatttaata gacccctgga tcatgaataa ttttgtccaa gcccctgaag 5581 gcgagttcac tatctcaccc aacaataccc ccggagatat cttatttgat ttgcgcctgg 5641 ggccacacct taatcctttc ctcctacatt tatcccagat gtataatggt tgggttggga 5701 acatgagagt tagggtcatg cttgcaggga acgcgttctc tgctggtaag atcataattt 5761 gttgtgtccc acctggcttt gaatcccaga acatatcaat tggacaggct actatgttcc 5821 cccatgtcat agctgatgta agagtcctgg agcccataga gatcccactt gatgatgtgc 5881 gcaacgttct gtaccacaca aatgagaacc gcccaaccat gcgattgctc tgcatgttgt 5941 acacgcctct ccgcgccgga ggggcttcat caggcacaga cccttttgtc attgctggcc 6001 gtgtgttgac ttgccctgcc cctgacttta attttctgtt tcttgtgccc cccagtgtag 6061 aacagaaaac caggcaactg actataccca atataccctt gaataatttg gctaactcca 6121 gagtgcctgc aatgataaat aaaatgacag tctctgctga tcagaatcag gtggtccagt 6181 ttcaaaatgg ccgttgcaca cttgaaggac aactcttagg tacaactcct gtttcagcca 6241 accaagttgc ccgcatacgt ggtaaagtct tctctactaa ctccggaacg gggcttaatt 6301 taactgaaac agatggaacc ccctaccatg catttgagag cccggccccc ctcggttttc 6361 ctgacatagg tgattgtgat tggcatgtgt atgcttttaa ggtgaatcaa aatacggggg 6421 atcccatgta cagattggat ataacacaag gaaactcatt tgcgccgcat cttggctcca 6481 ttgagttcac ttctgatcag aacccatcag gagatcaatt aggcacactt acttggatct 6541 cccctctcaa taattcctcc agggttgacc cctggaaaat cccatcatat ggttcaacat 6601 tgactgagtc cactaacctg gcaccgccca tctttccacc aggctttggt gaggccatag 6661 tctacttcat gtcagatttc cctattgtgt caggtaacac tgcccaaatc ccctgcaccc 6721 tgccccaaga gttcatctca tcctttgtgg aacaacaggc acccatccga ggtgaggctg 6781 ctctactgca ttatgtggac ccagacaccc atcgcaattt gggagaattc aaactgtatc 6841 ctgatgggtt catcacttgt gtgccaaaca cgggtggcgg tccccaaaac ctcccttcaa 6901 atggtgtctt tatcttttct tcttgggtct ctagatatta ccaattgaag cctgtgggaa 6961 cagccggtcc ggctaggcgg cttggtgtga gaaggatata atggctcaag ccattatagg 7021 agctattgcc gccaccgctg ctggcagcgc agtgggggca ggaatccaag ctggaactga 7081 ggcagccttg caataccaaa ggttccaaca agaccttact ctgcaggaga attcttttaa 7141 gcatgatgaa agaatgttgg gtttacaaat tgaggggtct aacgctttgc tacaaaagaa 7201 cctttccact cgctataatt ttttagttgg tgcaggtctt tcctcagctg atgccgcaag 7261 gtctattgct ggggccccag tgacaaaaat cgtggactgg aatggggtga gaattgctgc 7321 ccctacatcc actgccacca ctctccgttc tggcaacttc atgagcatac cagttacacc 7381 taaaagggag ccccaaaaat tgccagcacg ttctgtgggc ctctctaatc ctaattatga 7441 ttcatccact atgatttcta ggacaacaca atgggtggaa tcgcaaaatt caatcaggaa 7501 tttgtcacct tttcatagct ctgctttgag gactacttgg gtaacccctc ctggttctac 7561 ttctacttca accttttcta ctgtttcttc ggcgccacga tactttaata ccgagcgcct 7621 tcctttgttc gcaaacaata ggaaatagtt tttgtaatat aatgtgggca tcatattcat 7681 atttggttta ttaattggat taacttgatc aattggatat tttatatttg gtttattaat 7741 tggattaatt tgattaattg gatttgaatt ggatgtt //