Typing tool
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Typing tool
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Complete norovirus genomes
| MT372468 | GI.3 | |
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| GI.P3 |
ORF1: 95..5404
ORF2: 5388..7019
ORF3: 7019..7666
LOCUS MT372468 7763 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2015/GI.3[P3]/Callao0752, complete
genome.
ACCESSION MT372468
VERSION MT372468.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7763)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7763
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0752"
/isolate="Hu/US/2015/GI.3[P3]/Callao0752"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="06-Jul-2015"
/note="genotype: GI.3[P3]"
gene 95..5404
/gene="ORF1"
CDS 95..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23073.1"
/translation="MARIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPSRQESPP
KGQRDRPPRTASEVKKVMGWGVEPEHQESTAKAWCDLTQEEKEEIMRNNEKLFDAGGI
TPSTLPSTFERADPVDSPSEQQPVTWSASGGVDIGISELTTVRGPFWNMCPLPPLEAR
SNGPADEPLIGDMIEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAWWR
VCYVPTNQQRLTYDQLKELENEPWPYASITNNCYEFCCRVMALDDTWLERRLVSTGKF
NHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLSNC
DWTFMGVVELIVLLAELFDVFWTPPDISSFIASLLPEFHLQGPEDLAKDLVPLILGGI
GLAIGFTRDKVTRVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGIED
AVIDMEVLSSTNVTQLVKDKKLARTYMNVLDNEEEKARKLSVRSADPHIVTSVNNLIS
RISMARSALAKAQAEMTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLANEIRPGGKVGL
VPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGMQF
SSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQMRRTHPGDANAIKDLY
KRDYSHLKMELAPQGGFDSQGNTPFGKGTIKPTTLNRLLIQATALAMERQDEFQLQGA
VYNFDEDRVSAFTSLARANGLGLLSMATLGKRLRSVKSMEGLRNALVGYKIGECDIIW
NTRVYSIKSDGSTVTIKEKQAPTSPQYQAISTATLALSRLRAARALAYASCLQSAVLS
ILQVAGSALVVSRAVKRMFGTRTEQPMLEGKHKEHNCRVHRAEAAGHGPIGHDGIIER
YGLCESEQEEEGEQTVELPTANKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYK
KIREEKSGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRK
QRQEERRQLGLVSGSEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSRVV
KFGSGWGFWVSSTVFITTTHVIPPGAKEIFGEDLNNVAIHRVGEFTQFRFSKKMRPDL
TGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGAN
AKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAIQGGDGEATLEGGG
QNKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVEGGPSLQ
QVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYSDACMSLDKTTS
SGHPHHKKKNDDWNGNSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDKVY
TKIKKRLLWGADLGTVIRAARAFGPFCEAIKSHVIKLPIKVGMNAIEDGPLIYAEHSK
YKYHYDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVI
SVKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTD
IEFDPIRLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDR
NSIERQLWWTRGPNHEDPFETLVPHSQRKIQLISLLGEAALHGEKFYRKIAGRVIQEV
KEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7019
/gene="ORF2"
CDS 5388..7019
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23074.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEASTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVRVLLAGNAFTAGKIIISCVPPGFAAQNVSIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDSTPTMRLICMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFNFL
FLVPPNVEQKTKPFSVPNLPLNVLSNSRVPSLVRSMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGTVYHATGGQGLNLTEIDGTPYHAFESPAPIGFPDLGECDWH
INASPANAFTDGSIIHRIDVAQDSTFAPHLGTIHYTNASYDANVSLICSLEWLSPPSG
GAPKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGSDGLSVPCTI
PQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQTL
PINGVFTFISWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7019..7666
/gene="ORF3"
CDS 7019..7666
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23075.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARMVVGAPATRVIDWNG
TRVSAPRSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPNALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgataaca ttggatcccg ccttatggcg aggatccgtg ggcgtatagg
121 cccacaacgt ggtgaaacaa ccacaaaaat aaaagatgcc aatatggcac ttgacctgct
181 acgccggtca caaacacctt ccccatcccg gcaagagagc ccccccaagg gtcagagaga
241 ccgcccccct cggaccgctt ctgaggtgaa gaaagtgatg gggtggggtg tcgaaccaga
301 acatcaggaa agcacggcta aggcatggtg cgacctcacg caggaagaga aggaggagat
361 aatgcgcaat aatgaaaaac ttttcgacgc tggagggatc accccatcaa ccttgcctag
421 cacttttgag agggccgatc cggttgacag ccccagtgaa cagcaacctg taacatggtc
481 tgctagtggt ggggtcgata ttggtatcag tgaactgacc accgttcgtg gcccattttg
541 gaacatgtgc cccctcccac cactggaagc ccggagtaat ggccccgctg atgagcccct
601 cataggggac atgatagagt tctatgaagg ccatatattc cattatgcca tctacattgg
661 acaaggtaag accattgggg ttcactcacc acaagcggct ttctccatac caagaataac
721 cattcatcct ctagtagcct ggtggcgcgt ctgctatgtc ccaactaatc aacagcgcct
781 cacttatgac caacttaaag aattggagaa tgaaccatgg ccctacgctt ccatcacaaa
841 caattgttat gagttttgct gcagagtgat ggcacttgac gacacgtggc ttgagaggag
901 gttggtcagc actggaaaat tcaaccaccc aacacaagac tggtcacagg acaccccaga
961 tttccaccaa gattcgaagc ttgagatggt aagagatgct gtgctatcag ctattaatgg
1021 ccttgtgtca caacccttca agaacatcct gtcaaagatt aaaccattaa atgttctcaa
1081 tctcttgtca aattgtgatt ggactttcat gggggttgta gaattgatcg tgctcctagc
1141 ggagttgttc gatgtgttct ggaccccacc agacatctca agtttcattg cctcactact
1201 acctgaattt cacctgcagg gcccagaaga cctagctaaa gacctggtcc ctcttattct
1261 aggtggcata ggcctggcta ttggctttac aagagataaa gtgacaagag tgatgaagag
1321 cgccgtcgat gggctgcgat cggcaacaca gctcgggcag tacggactgg aaatattctc
1381 aatcatcaag aaatatttct ttggtgggga ccaaacggag aagaccttgc ggggtataga
1441 ggatgcagtg atagatatgg aggtattgtc cagcaccaat gtgacacaat tggttaaaga
1501 taagaagttg gccagaactt atatgaacgt gctggacaat gaggaggaaa aagcgaggaa
1561 actttcggtc cgtagtgccg acccgcacat agtgacctca gtcaacaacc tgatatcacg
1621 catatctatg gcaagatcag ccttggctaa ggcccaggct gaaatgactt ctcgcccacg
1681 cccagtggtc ataatgatgt gtggcccccc cggcatcggg aaaaccaagg ccgccgaaca
1741 cctggccggc cgattggcaa atgaaatcag accgggaggc aaggttgggc ttgtgccccg
1801 ggaatccata gatcactggg acggatacca tggcgaggat gtcctgctat gggatgacta
1861 tggcatgtca aagataacag aggactgtaa caagttacaa gccatagctg acactgcacc
1921 cctatcactt aattgtgaca ggatagagaa caaaggcatg caattctcct cagatgcaat
1981 aatcataacc actaacgccc ctggcccggc cccagtggac tttgtcaacc tgggccctgt
2041 gtgcaggcga gtggacttct tggtctattg ttctgcccct gaaattgaac aaatgagaag
2101 aacccaccct ggtgatgcca atgccatcaa ggacctatat aaaagggact attcacacct
2161 aaaaatggaa ttagccccgc aaggtggctt tgacagccag ggcaatacac catttggaaa
2221 gggcaccata aaacccacga ccctcaatag gctactcatc caggcaactg cattagctat
2281 ggaacggcaa gatgagttcc aactccaagg ggctgtttat aactttgatg aagacagggt
2341 gtccgccttc acaagcctgg cccgtgctaa tggcttgggg ctcttgagca tggctacatt
2401 aggtaaaagg ctcagaagcg tcaaatctat ggagggcctg cgcaatgcat tggtgggcta
2461 caaaatagga gagtgtgata taatctggaa caccagagtg tattcaatta aaagtgatgg
2521 tagtactgtc acaatcaagg aaaaacaagc cccaacctca cctcaatacc aggccattag
2581 cacagccact cttgcactct ccaggctgcg ggctgctaga gctcttgcct acgcctcctg
2641 cctacagagt gcagtgctgt caatacttca agttgctggc tctgccctgg tagtgagcag
2701 ggccgtgaaa cgcatgtttg gcacgcgcac tgaacaacct atgttagaag gcaagcacaa
2761 agaacacaac tgcagggtgc accgcgcaga ggcagctggc catggcccta ttggacatga
2821 tggaatcatt gaacgttacg gcctttgtga gagtgagcaa gaagaagaag gtgagcaaac
2881 agttgagtta cccactgcca ataaggaagg taaaaacaag ggcaaaacca aaaagggccg
2941 tgggcgcaag tccaatttta atgctttctc aagacgcggc ctcagtgatg aagagtatga
3001 agaatacaaa aagattagag aagaaaagag tggcaactac agcatccagg agtacctcga
3061 ggatcgccaa cgctatgagg aagaactcgc tgaagtacag gctggtgggg atggtgggat
3121 tggtgagact gaggcagaga ttcgtcatcg ggttttctat aaatcaaaat ccggcatgag
3181 aaaacaacgc caagaagaac ggcgccagct aggtctcgtc agcggttctg agatccgcaa
3241 acgcaagccc atagactgga cccctcctaa gaatgattgg tcagaagaca ccagaactgt
3301 caactacgat gaacacatta gctttgaagc ccctccctca atttggagta gggtggtgaa
3361 atttgggagt ggctggggct tttgggtgag ctcaacagtg ttcataacta caacccatgt
3421 cataccacct ggggccaaag aaatcttcgg tgaagacctc aacaatgtgg ccatccacag
3481 ggttggtgag ttcactcagt tccgtttctc caaaaagatg agacctgacc tcaccggtat
3541 ggtcttagaa gaaggttgcc cagagggaac agtgtgtacc ataatgatca agagagactc
3601 tggtgagctg ctgccgctcg ccgttcggat gggggcagtg gcatcaatga agatccaagg
3661 taagcttatg catggacaat caggaatgtt actcaccggt gctaatgcca aaggcatgga
3721 tcttggaacc atacctggtg attgtggggc accctatgtt cacaagaggg gaaacgattg
3781 ggtagtctgt ggagtgcatg cagccgctac aaaatcaggc aacactgtag tgtgcgccat
3841 acagggtggt gatggtgaag ccacgctaga aggcggcggt caaaacaagg gccactatgc
3901 agggcacccg atactaaggt atgggaatgg cccttcgctg tcaaccaaga caaaattctg
3961 gaaatcaacc ccccagcctt tgccccctgg tacatacgag ccagcttacc ttggtggtag
4021 agaccccaga gttgaagggg gcccatcctt gcaacaagtg ttaagggacc agctgaaacc
4081 atttgccgag ccccgtggca gattgcccga agcgggcttg ttggaagctg cagttgaaac
4141 ggtcaccaat gcaattgagc aggtcatgga cacaccagtg gcatggagct atagtgatgc
4201 ttgcatgtcc ttggacaaga caaccagttc tggccacccc caccataaga agaaaaatga
4261 tgattggaat gggaattcat ttgtgaggga actaggcgac caggcagcgc atgctaacag
4321 catgtatgag cttggtaagt ccatgaaacc tgtgtacaca gcagccctaa aggatgagct
4381 agtcaaacca gacaaggtgt atacaaaaat caagaagagg ttgctttggg gcgcggacct
4441 tggcaccgtc attcgcgccg ctagagcatt tgggccgttc tgtgaggcca taaagtccca
4501 tgtgatcaaa ttgcctatca aagtgggtat gaatgccata gaggatggtc ctttgattta
4561 tgcagagcat tccaaatata agtaccatta tgatgctgac tatacagctt gggattcaac
4621 acaaaacagg gagatcatga tggaatcctt taatattatg tgcaagctca cagctaaccc
4681 ctccttggct gcagtagtgg cacaagatct gctctcccca tctgaaatgg atgttggcga
4741 ctatgtgatc agtgtcaaag atggactgcc atctggtttt ccatgcactt cgcaggtgaa
4801 cagcattaac cactggatcc taaccctatg tgcattgtca gaagtcactg gcttgtcccc
4861 agatgtgata caatcacaat cctacttctc attttatggt gatgatgaaa tagtctcaac
4921 agatatagaa tttgacccaa taagattgac acaaatactg aaggaatatg gtttaaagcc
4981 cacaagacct gacaaaactg atggcccgat tattgtcaga caacaggtcg atggcctggt
5041 cttcctccgg cgtaccatct ctaaggatgc cattggatac caagggcggc tcgaccgcaa
5101 ctccattgaa agacagcttt ggtggactcg cgggccaaac cacgaggacc catttgagac
5161 actagtccca cattcacaga gaaagatcca gttaatatcc ctgctgggtg aagcagcact
5221 ccatggtgaa aagttctaca ggaagatagc tggtagggtc attcaagaag tcaaagaggg
5281 ggggcttgaa atctatattc ctggctggca ggccatgttc cgctggatgc gattccatga
5341 tctaagtttg tggacagggg accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gttccagagg
5461 ccagtacagc tgaacctata tcaatggaac ctgtggctgg tgctgccaca gcagcagcaa
5521 ccgcaggtca agttaatatg attgacccct ggattatgag taattatgtt caagcccctc
5581 aaggagagtt cacaatttcc cctaataata cccccgggga catattgttt gatttacaat
5641 taggccccca tttaaatcca ttcctatcac acctagccca gatgtacaat ggttgggttg
5701 gtaatatgaa agttagggtg ttgctcgctg gtaacgcctt tacagcgggc aaaataataa
5761 tcagttgtgt ccccccaggt tttgcagccc agaatgtctc aatagcccaa gctactatgt
5821 tccctcacgt tattgcagat gtgcgggtgc ttgaaccaat tgaagtccca ctagaggacg
5881 ttaggaatgt gcttttccac aataatgatt ctactccaac tatgaggttg atttgcatgc
5941 tttacacccc tcttcgtgct agtggtagtt cctctggcac agatccattt gtcatagctg
6001 gtcgggtcct cacctgtccc agtcctgact tcaacttttt gttccttgtg ccccccaatg
6061 ttgaacagaa aaccaaacca ttcagtgtgc ctaatctacc tctcaatgtt ctctcaaatt
6121 ctagagtccc ctccttggta aggtccatga tggtctccca agaccatgga cagatggtac
6181 agttccaaaa tggtagggtc acattagacg gacagctcca aggcaccacc cccacttcag
6241 ctagtcagct ctgtaagatt cgagggacgg tttatcatgc gactggtggt caagggctta
6301 atttaactga gattgatggc accccctacc acgcatttga gagccctgcc ccaattggct
6361 tccccgattt aggagagtgt gattggcaca ttaatgcatc tcctgccaat gcctttacag
6421 atggtagcat tatacataga attgatgtgg cccaggattc cacttttgcc ccccatttag
6481 gcactatcca ttacaccaat gctagttatg atgcaaatgt tagcctgatt tgttcacttg
6541 aatggctttc tcctccaagt ggtggtgctc caaaggtaaa cccatgggcc attcctcggt
6601 atggttcaac tttaactgag gctgcccaat tggccccacc aatatatccc cctggttttg
6661 gtgaggcaat tgttttcttc atgtctgatt ttcccatagc caatggttca gatggcctga
6721 gtgtcccttg caccatacca caagagtttg tgacccattt tgttaatgaa caagctccaa
6781 cccgtgggga agctgccctt cttcattatg ttgaccctga cacacaccgc aatttaggtg
6841 agttcaaatt atatcctgaa ggattcatga cttgtgtacc aaattctagt ggcagtggcc
6901 cccaaacatt acccatcaat ggggtcttca ccttcatctc ttgggtctcc cgtttttacc
6961 aactaaagcc tgtgggaacg accggaccgg ttcgtaggct cgggatcagg agatcataat
7021 ggcccaagca ataattggag caatagctgc gacggctgct ggcagtgctg taggtgcggg
7081 cattcaggct ggcactgagg ctgcgcttca acaccagcgc ttccagcagg acttgacgtt
7141 gcagagtaac actttcaaac acgacaagga aatgttagga ttgcaggttg gtgcttccac
7201 tgccctttta caaaatagcc tcaatacccg ctataacatg ctcactaatg ctggcctctc
7261 atcttcggat gcggctcgca tggtggttgg cgcgcctgct acgcgtgtta tagactggaa
7321 tggtaccagg gtatcagcac cgcggtccac tgccaccaca ctgaggtctg gcggattcat
7381 gacaatccca actctataca agggcaagca acaacagaag gctccaaccg aaattggttt
7441 gtctaatcca aattatgggt catctgtatc ctcaagggtt gctgattggg tttcttctca
7501 aaattcttct cgctcgtcct tgggcccgta ccaccccaat gctttacaaa caacatgggt
7561 aacaccaccc ggttcaagct ctacttctac tatttcttct gtgtctactg cacctagata
7621 tttcaatact gataggttgc ctctattcgc gaatatgagg aaataatttt gtaatatgaa
7681 atgtgggcat catattcaat tggatttggt taattattaa tttggtctaa ttatcaattt
7741 ggtttgattt ggaatttgat gtt
//