Typing tool
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Typing tool
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Complete norovirus genomes
| MT372467 | GI.3 | |
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| GI.P13 |
ORF1: 95..5410
ORF2: 5394..7028
ORF3: 7028..7675
LOCUS MT372467 7773 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2015/GI.3[P13]/Callao0729, complete
genome.
ACCESSION MT372467
VERSION MT372467.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7773)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7773
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0729"
/isolate="Hu/US/2015/GI.3[P13]/Callao0729"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="27-Apr-2015"
/note="genotype: GI.3[P13]"
gene 95..5410
/gene="ORF1"
CDS 95..5410
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23070.1"
/translation="MAKIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPCRQINDS
APKAQRDRPPRTASEVKRALGWDAEPEHQESTARAWCDLSKEEKEEIMRNNERLFDAG
GVTPSTLPSTFERIDSSSVTDEQQPVTWSSNGGVDLGINELTTVRGPFWNMCPLPPLE
ARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAW
WRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCYEFCCKVMALDDTWLQRKLVTSG
KFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLS
NCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPDFHLQGPEDLARDLVPLILG
GIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGI
EDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEEERARKLSVRSADPHIVTSVNNL
ISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKV
GLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGM
QFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQTRRAHPGDTNAIKD
LFKKDFSHLKMELAPQGGFDSQGNTPFGKGVMKTTTLNRLLIQATALAMERQDEFQLQ
GAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLRSVKSMEGLRNALLGYKIGECDI
IWNTRVYSVKSDGSNVTIKEKQAPSSPQHQAISTATLALSRLRAARALAYASCLQSAV
LSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRVHRAEAAGHGPIGHDGII
ERYGLCESEQEGEDGQTVELPTADKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEE
YKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGM
RKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSR
VVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENISNIAIHRVGEFTQFRFSKKMRP
DLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTG
ANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEG
GDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPLPPGTYEPAYLGGRDPRVEGGPS
LQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYSDACMSLDKT
TSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYELGKPMKPVYTAALKDELVKPDK
VYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEH
SKYKYHFDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDY
VISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVS
TDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRL
DRNSIERQLWWTRGPNHDDPFETLVPHPQRKVQLISLLGEAALHGEKFYRKIASRVIQ
EVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1225
/gene="ORF1"
/product="p48"
mat_peptide 1226..2314
/gene="ORF1"
/product="NTPase"
mat_peptide 2315..2914
/gene="ORF1"
/product="p22"
mat_peptide 2915..3334
/gene="ORF1"
/product="VPg"
mat_peptide 3335..3877
/gene="ORF1"
/product="Pro"
mat_peptide 3878..5407
/gene="ORF1"
/product="RdRp"
gene 5394..7028
/gene="ORF2"
CDS 5394..7028
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23071.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLSPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMIQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFSSGESVKRLDVEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7028..7675
/gene="ORF3"
CDS 7028..7675
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23072.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFRHDKEMLGLQVGASTALLQNSLSTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKVPTEIGLSNPNYGSSVSSRVADWVSS
QSSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRR"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacgatgc
61 taacaccaac aatgaaaaca taggatctcg ccttatggcg aagatccgtg ggcgtatagg
121 cccacaacgt ggtgaaacga ccacaaagat caaagatgcc aacatggcgc tcgacctttt
181 acgccggtca caaacaccat ctccatgtcg acaaattaat gacagcgccc ccaaggctca
241 aagggaccgt cccccgcgga ccgcttcaga ggtgaaaagg gcgctggggt gggatgctga
301 accagaacac caagaaagca cggccagggc atggtgtgac ctctcaaaag aggagaagga
361 agagataatg cgtaacaatg agaggctttt tgatgctgga ggtgtcaccc catcgaccct
421 acccagcaca tttgagagga ttgattcaag cagtgtcact gacgagcaac aacctgtgac
481 atggtcttct aatggagggg ttgaccttgg catcaatgaa ttgaccacag ttcgtggccc
541 gttttggaat atgtgccccc tcccaccact agaagcccgt aacagtggcc ctgctaagga
601 gccccttata ggggacatgg tcgagttcta tgaaggacac atattccatt atgccatcta
661 catcggacag ggcaagacta ttggagtcca ttcaccacag gccgcttttt ccatacccag
721 aataaccatc cacccactgg tagcctggtg gcgcgtgtgt tacatcccca ctagccaaca
781 acgccttacc tacgaacagc ttaaggagtt ggagaatgaa ccatggccct atgcctcaat
841 caccaacaat tgttatgagt tttgctgcaa agtgatggca ctcgatgata cctggctcca
901 aagaaaactg gttactagtg gaaaatttaa ccaccctacg caggactggt cacaggacac
961 cccagatttc catcaggact cgaagcttga aatggtaagg gacgctgtcc tgtcggccat
1021 caacggtctt gtatcacaac cctttaagaa catcctgtct aaaattaaac cattaaatgt
1081 gcttaacctt ctatcaaact gtgattggac cttcatgggc gtcgtggaac tggtagtgct
1141 cctggcggaa ctgtttgatg tgttctggac cccaccagac atttcaagct tcattgcatc
1201 tttactacct gattttcatc tacaaggccc agaagaccta gccagggact tagtccccct
1261 catattaggt ggcataggct tagcaattgg ttttacaaga gacaaaataa caaaagtgat
1321 gaagagcgcc gttgatgggc tgcggtcagc aacgcagctc ggacagtatg gactggagat
1381 attctcaatt atcaagaaat acttctttgg aggggaccaa acagaaaaga ccctgcgagg
1441 cattgaagat gcggtgatag acatggaagt gttgtccagt accaatgtta cacaattggt
1501 caaagataag aagttagcca aagcttacat gaatgtgctg gacaatgagg aggaaagagc
1561 aaggaagctc tcagtccgta gtgctgaccc acatatagtg acctctgtca acaacttgat
1621 atcacgcatc tctatggcga gatcagctct ggctaaagcc caagctgagt tgacgtcccg
1681 cccacgacca gtggttataa tgatgtgtgg tcctcctggt atcggaaaga ctaaggccgc
1741 tgagcaccta gccggccgac tagctgctga aatcagacct ggaggcaaag ttggtcttgt
1801 gccccgggag tccatagacc attgggatgg atatcatggc gaggacgtct tgctctggga
1861 tgactatggc atgtcaaaga taacagagga ttgcaataag ttacaggcta tagccgacac
1921 tgcaccactg tcacttaatt gtgacagaat agaaaacaaa ggcatgcaat tctcttctga
1981 tgcaataatt ataaccacca atgcccctgg cccagcccca gtcgacttcg tcaacttagg
2041 ccccgtgtgc agacgagtgg actttttagt ttactgttct gcacccgaga ttgaacaaac
2101 gcggagggcc catccaggtg acaccaatgc catcaaggat ctgtttaaaa aggacttctc
2161 acacttaaaa atggaactgg ctccacaggg cggctttgat agtcagggca acacgccctt
2221 tgggaagggt gtcatgaaaa ccacaaccct caataggtta ctgatacagg ccacagcatt
2281 agccatggag cgacaagatg aattccaact ccagggggcc gtctacaact ttgacgagga
2341 cagagtggcc gccttcacca atctagctcg agctaatggc ctggggctta taagtatggc
2401 aacattaggc aagaagctaa gaagtgttaa gtccatggaa ggcttgcgta atgcactact
2461 gggatacaag attggagagt gtgatataat ctggaacacc agggtgtatt cagttaagag
2521 tgacgggagc aatgtcacaa ttaaagaaaa gcaggcacca tcctcacccc aacatcaagc
2581 tatttccaca gccaccctag cgctctctag actgcgggct gccagagctc ttgcgtacgc
2641 ctcctgttta caaagtgcag tgttgtcaat actccaggtt gccggctctg ccttagtggt
2701 gagcagggct gtaaaacgta tgtttggcac acgcaccgaa cagcccattc tggagggtaa
2761 gcataaagaa cacaattgca gggtacaccg tgcagaggcc gccggtcatg gccccattgg
2821 tcatgatgga atcattgaac gttatggtct gtgtgagagt gagcaggaag gagaagatgg
2881 ccaaactgtg gagttgccca ctgctgacaa agaaggtaag aacaaaggca aaaccaaaaa
2941 gggccgcgga cggaaatcca atttcaacgc attctctagg cgtggactca gtgatgagga
3001 atacgaagag tacaagaaag tgagagaaga gaagggtggc aattacagca tacaagagta
3061 ccttgaggac cgccagcgtt atgaggaaga actcgctgag gtgcaagctg gtggagatgg
3121 tggaatcggc gaaactgaag ctgagatccg ccaccgtgtt ttctataaat caaagtctgg
3181 catgagaaaa cagcggcaag aggaacgccg ccagttaggc ctcgtgagcg gtactgaaat
3241 ccgcaaacgt aagcccatag actggacccc ccccaaaaat gattggtcag aggacactag
3301 aactgttaat tatgatgaac acatcagctt tgaagccccc ccttcaatct ggagtagagt
3361 agttaaattt ggcagtggct ggggtttttg ggtgagttca acagtgttca tcaccacaac
3421 acatgttata ccacctggtg ctaaagagat ctttggtgag aacatcagca atattgccat
3481 ccacagagtt ggcgaattca cccaattccg tttctccaag aaaatgaggc ctgacctctc
3541 tggcatggtt ctggaagagg gatgccctga gggcacagtg tgcaccataa tgataaaaag
3601 agactctgga gaactgttgc cgctggctgt tcgtatggga gcagtggcct caatgaagat
3661 ccaagggaag ctcatgcatg gacagtcagg gatgttgctc accggtgcta acgccaaggg
3721 catggacctt ggtaccatac ctggggattg tggagcgccc tatatccata agagagggaa
3781 tgactgggtg gtttgtgggg tgcatgcagc agccacgaaa tcaggcaata ccgtggtgtg
3841 tgccatacaa ggtggtgaag gtgaagccac gctagagggt ggcgatcaaa ataagggtca
3901 ctatgcagga catccaatac taagatatgg tagtggccct tcattgtcaa ctaaaacaaa
3961 gttctggaaa tcaaatcccc aacctctacc ccctggtaca tatgaaccag cctacctcgg
4021 tggcagagac cccagggttg aaggtggtcc atctttgcag caagtgttgc gggaccagct
4081 aaaaccattt gctgaacccc gtggcaggtt gcccgaagca ggattgctag aagccgcggt
4141 tgaaactgtc accaatgcaa ttgaacaggt catggacaca cctgtggcat ggagttacag
4201 cgacgcctgc atgtccttag acaaaacaac cagttctggc taccctcatc acaaaagaaa
4261 gaatgatgac tggaacggga gttcatttgt gagagaattg ggagatcagg cagcgcatgc
4321 taatagcatg tatgagcttg gtaagcctat gaaaccagtg tatacagcag cactcaagga
4381 tgaacttgtt aaaccagaca aggtgtacaa taaaattaag aaaaggctac tctggggggc
4441 ggacctcggc accgttatac gtgctgctag ggcttttggt ccattttgtg aagcaataaa
4501 gccccatgtg attaagttgc ccatcaaagt gggcatgaat gccatagagg atggaccctt
4561 aatttatgca gaacactcca aatataagta tcattttgac gctgattaca cagcatggga
4621 ctcaacacaa aacagggaga ttatgatgga gtcctttaac atcatgtgta aactcaccgc
4681 taatccctcc ctagccgcag tggtggcaca ggacctgctc tctccttctg agatggatgt
4741 cggtgattat gtgatcagtg tcaaagatgg tctaccatct ggctttccat gtacctcaca
4801 agtgaacagt atcaaccatt ggatctacac tttgtgcgcc ttatcagaag ttactggttt
4861 ggctcctgat gtaatacagt cacagtctta cttttcattt tatggtgatg atgaaatagt
4921 ttcaacagat attgaatttg actcaaacag actaacacag gtgctaaaag agtatggctt
4981 aaaacccaca agacctgata aaactgatgg tccgatcatt gtaaggcaac aggttgatgg
5041 cttggttttc cttcggcgca ccatttcgaa ggatgccatc gggtaccagg gtcggcttga
5101 ccgtaattcc attgaaagac agctctggtg gacccgaggg cccaatcatg atgatccatt
5161 tgaaaccttg gtcccacacc cacagaggaa ggtccaatta atatccctgt taggtgaggc
5221 cgcacttcat ggtgaaaaat tttatagaaa gatagccagt agggtgatcc aggaggttaa
5281 agaaggagga ttagaaattt acattcctgg gtggcaggcc atgttccgct ggatgcgatt
5341 ccatgatttg agtttgtgga caggagaccg cgatctcctg cccgattatg taaatgatga
5401 tggcgtctaa ggacgcccca acaaacatgg atggcaccag tggtgccggc cagctggtac
5461 cagaggcaaa cacagctgag cctatatcaa tggagccagt ggctggggca gcgacagctg
5521 ccgcaaccgc tggccaagtt aacatgattg acccctggat tatgaataat tatgtgcaag
5581 ccccacaagg tgagttcacc atatcaccaa acaacacacc aggtgatatt ctatttgatc
5641 tacaattaag ccctcacctc aacccctttc tatcccattt ggctcaaatg tacaatgggt
5701 gggtaggtaa catgaaagtg aaagttctat tggcaggtaa tgctttcacg gcaggaaaaa
5761 ttattattag ttgtataccc cctggttttg tctcacagaa tatatctata gcccaagcca
5821 caatgttccc ccacgttata gctgatgtca gggtcctgga gcccattgag gtcccattgg
5881 aggatgtgag gaatgtgctg ttccacaata atgataacac accaaccatg agactggtat
5941 gcatgctcta tacccctttg cgcgccagcg gaagctcatc tgggacagac ccctttgtga
6001 ttgctgggcg tgtgttgacc tgccctagtc ctgattttag cttcttattc ttggtgcccc
6061 ccaatgtaga acaaaagact aaacctttta gtgttccaga cctcccactc aatgttctat
6121 caaattcaag ggtgccatca ctgataaaat tcatgatggt gtcacaggac cacggacaga
6181 tgatacaatt tcagaatggc agggtcacac tggatggaca gctccagggc accacaccaa
6241 catcggccag ccagctctgc aagatgcggg ggacggttta ccatgcctcc ggtggtcaag
6301 ggctcaattt aactgagatt gatggcaccc cctatcatgc atttgaaagc ccagctccca
6361 ttggtttccc tgacataggg gacagcgatt ggcatatcaa cgcttcaccc gccaccgcct
6421 ttagcagtgg tgaaagcgtc aaaagactag atgtggaaca gggctcttca tttgccccac
6481 atttgggtac tgtacactat actaatgcca gttatgaagc taacactgac ctgatctgct
6541 cattggagtg gctgtccccg cctagcggag gcactccaaa caaagtcaac ccttgggcca
6601 tcccgcggta tggttcaact ttaactgaag ctgctcaact ggccccacca atttaccccc
6661 ctggctttgg agaagctata gttttcttta tgtctgattt tcctatagca aatggtcaag
6721 atgggttaag agtgccttgc actatacccc aagaatttgt aacccatttt gtcaatgaac
6781 aagcaccaac ccgtggggaa gctgcccttc ttcattatgt tgaccctgac acacaccgca
6841 atctgggtga gttcaagtta taccctgaag gatttatgac ttgtgtacca aattctagtg
6901 gtagtggtcc ccaaacgctg cctatcaatg gagtctttac ttttgtctct tgggtttccc
6961 gtttctatca attaaagcct gtgggaacga ccggaccggt tcgtaggcta ggaatcagga
7021 gatcataatg gcccaggcaa tacttggagc aatagctgcg acggctgctg gtagcgctgt
7081 gggtgcaggc attcaggctg gtactgaggc cgcactccaa catcagcggt tccagcagga
7141 tttaacgttg cagagcaaca ctttcagaca tgacaaagag atgctagggc tacaggttgg
7201 cgcttctact gcccttttgc aaaacagcct cagcacccgc tacaacatgc tcacaaatgc
7261 tggtctctca tcctcagatg cagcacgcgt ggtggttggc gcgccagcca cacgtgttgt
7321 tgactggaac ggcaccaggg tgtcagcacc acaatctaca gctaccacat tgaggtctgg
7381 tgggtttatg acaatcccaa ccctgtataa gggcaaacaa caacagaagg tcccaactga
7441 aattggcttg tctaacccaa attatggttc atctgtgtct tctagggttg ctgattgggt
7501 ttcctctcaa agttcttctc gctcttcctt gggcccgtat caccccagtg ctttgcagac
7561 aacgtgggtg accccacccg gttctagttc tacctctact atttcttctg tgtctactgc
7621 acctagatat tttaatactg ataggttgcc tctattcgca aatatgagga gataattttt
7681 gtaatatgat atgtgggcat catattcaat tggatttgat taattattaa tttggtttaa
7741 ttattgattt ggtttaattt ggattttgat gtt
//