Typing tool
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Typing tool
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Complete norovirus genomes
| MT372466 | GI.3 | |
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| GI.P13 |
ORF1: 95..5410
ORF2: 5394..7028
ORF3: 7028..7675
LOCUS MT372466 7773 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2015/GI.3[P13]/Callao0680, complete
genome.
ACCESSION MT372466
VERSION MT372466.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7773)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7773
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0680"
/isolate="Hu/US/2015/GI.3[P13]/Callao0680"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="06-Jan-2015"
/note="genotype: GI.3[P13]"
gene 95..5410
/gene="ORF1"
CDS 95..5410
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23067.1"
/translation="MAKIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPCRQINDS
APKAQRDRPPRTASEVKRALGWDAEPEHQESTARAWCDLSKEEKEEIIRNNERLFDAG
GVTPSTLPSTFERTDSSSVTDEQQPVTWSSNGGVDLGINELTTVRGPFWNMCPLPPLE
ARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAW
WRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCYEFCCKVMALDDTWLQRKLVTSG
KFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLS
NCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPDFHLQGPEDLARDLVPLILG
GIGLAIGFTRDKTTKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGI
EDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEEEKARKLSVRSADPHIVTSVNNL
ISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKV
GLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGM
QFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQTRRAHPGDTNAIKD
LFKKDFSHLKMELAPQGGFDSQGNTPFGKGVMKTTTLNRLLIQATALAMERQDEFQLQ
GAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLRSVKSMEGLRNALLGYKIGECDI
IWNTRVYSVKSDGSNVTIKEKQAPSSSQHQAISTATLALSRLRAARALAYASCLQSAV
LSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRVHRAEAAGHGPIGHDGII
ERYGLCESEQEGEDDQTVELPTADKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEE
YKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGM
RKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSR
VVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENISNIAIHRVGEFTQFRFSKKMRP
DLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTG
ANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEG
GDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPLPPGTYEPAYLGGKDPRVEGGPS
LQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYSDACMSLDKT
TSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDK
VYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEH
SKYKYHFDADYTAWDSTQSREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDY
VISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVS
TDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRL
DRNSIERQLWWTRGPNHGDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIASRVIQ
EVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 95..1225
/gene="ORF1"
/product="p48"
mat_peptide 1226..2314
/gene="ORF1"
/product="NTPase"
mat_peptide 2315..2914
/gene="ORF1"
/product="p22"
mat_peptide 2915..3334
/gene="ORF1"
/product="VPg"
mat_peptide 3335..3877
/gene="ORF1"
/product="Pro"
mat_peptide 3878..5407
/gene="ORF1"
/product="RdRp"
gene 5394..7028
/gene="ORF2"
CDS 5394..7028
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23068.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSHNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGTGESVKRLDVEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7028..7675
/gene="ORF3"
CDS 7028..7675
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23069.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTVLLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QSSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgaaaaca taggatctcg ccttatggcg aagatccgtg ggcgtatagg
121 cccacaacgt ggtgaaacaa ccacaaagat caaagatgcc aacatggcgc tcgacctttt
181 acgccggtca caaacaccat ctccatgtcg gcaaattaat gacagcgccc ctaaggctca
241 aagggaccgt cccccacgta ccgcttcaga ggtaaaaagg gcgctggggt gggatgctga
301 accagaacac caagaaagca cggctagggc atggtgtgac ctctcaaagg aggagaagga
361 agagataata cgtaataatg agaggctttt tgatgctgga ggtgtcactc catcgaccct
421 gcccagcaca tttgagagga ctgattcaag cagtgtcact gacgagcaac aacctgtgac
481 atggtcttct aatggagggg ttgaccttgg catcaatgaa ttgaccacag ttcgtggccc
541 gttttggaat atgtgccccc tcccaccact agaagcccgc aatagtggcc ctgctaagga
601 accccttata ggggacatgg tcgagttcta tgaaggacac atattccatt atgccattta
661 catcggacag ggcaagacta ttggagtcca ctcaccacag gccgcttttt ccatacccag
721 aataaccatc cacccactgg tagcctggtg gcgtgtgtgt tacatcccca ctagccaaca
781 acgccttacc tacgaacagc ttaaggagtt ggagaatgaa ccatggccct atgcctcaat
841 caccaacaat tgttatgagt tttgctgtaa agtgatggca cttgatgata cctggctcca
901 aagaaaactg gttactagtg gaaaatttaa ccaccctacg caggactggt cacaggacac
961 cccagatttt catcaggatt cgaagcttga aatggtaagg gacgctgtcc tgtcggccat
1021 caacggtctt gtatcacaac cctttaagaa catcctgtct aaaattaaac cattaaatgt
1081 gcttaatctt ttatcaaact gtgattggac cttcatgggc gtcgtggaac tggtagtgct
1141 cctggcagaa ctgtttgatg tattctggac cccaccagac atttcaagct tcattgcatc
1201 tttactacct gattttcatc tacaaggccc agaagaccta gccagggact tagtccccct
1261 catattgggc ggcataggtt tagcaattgg ttttacaaga gacaaaacaa caaaagtgat
1321 gaagagcgcc gttgatgggc tgcggtcagc aacgcagctc ggacaatatg gactggagat
1381 attctcaatt atcaagaaat acttctttgg aggggaccaa acagaaaaga ccctgcgggg
1441 cattgaagat gcggtgatag acatggaagt gttgtccagt accaatgtta cacaactggt
1501 caaagataag aagttagcca aagcttacat gaatgtgcta gacaatgagg aggaaaaagc
1561 aaggaagctc tcagtccgca gtgctgaccc acatatagtg acctctgtca acaacttgat
1621 atcacgcatc tctatggcaa gatcagctct ggctaaggcc caagctgagt tgacgtcccg
1681 cccacgacca gtggttataa tgatgtgtgg tcctcctggt atcggaaaga ctaaggccgc
1741 tgagcaccta gccggccgac tagctgctga aatcagacct ggaggtaaag ttggccttgt
1801 gccccgggag tccatagacc attgggatgg atatcatggc gaggacgttt tgctctggga
1861 tgactatggc atgtcaaaga taacagagga ttgtaacaag ttacaggcta tagctgacac
1921 tgcaccactg tcacttaatt gtgacagaat agaaaacaaa ggcatgcaat tctcttctga
1981 tgcaataatt ataaccacca atgcccctgg cccagcccca gttgactttg tcaacttagg
2041 ccctgtgtgc agacgagtgg actttttagt ttactgttct gcacccgaga ttgaacaaac
2101 gcggagggct catccaggtg acaccaatgc catcaaggat ctgtttaaaa aggacttctc
2161 acacttgaaa atggaactgg ctccacaggg cggctttgat agtcagggca acacaccttt
2221 tgggaagggt gtcatgaaaa ccacgaccct caacaggcta ctgatacagg ccacagcatt
2281 agccatggag cgacaagatg aattccaact ccagggggcc gtctacaact ttgacgagga
2341 cagagtggcc gccttcacca atctagctcg agctaatggc ctggggctta taagtatggc
2401 aacattaggc aagaagctaa gaagtgttaa gtccatggaa ggcttgcgca atgcgctact
2461 gggatacaag attggagagt gtgatataat ctggaacacc agggtgtatt cagttaagag
2521 tgacgggagc aatgtcacga ttaaagaaaa gcaggcaccg tcctcatccc aacatcaagc
2581 tatttccaca gccaccctag cgctctctag gctgcgggct gccagagccc ttgcgtacgc
2641 ctcctgttta caaagtgcag tgttgtcaat actccaggtt gccggctctg ccttagtggt
2701 gagcagggct gtaaaacgca tgtttggcac acgaaccgaa cagcccattc tggagggtaa
2761 gcataaagag cacaactgca gagtgcaccg tgcagaggcc gctggtcatg gccccattgg
2821 tcatgatgga atcattgaac gttatggtct gtgtgagagt gagcaggaag gagaagatga
2881 ccaaactgtg gagttgccca ctgctgacaa agaaggcaag aacaaaggca aaaccaaaaa
2941 gggccgtgga cggaaatcca atttcaacgc attctccagg cgtggactca gtgatgagga
3001 gtacgaggag tacaagaaag taagagaaga gaagggtggc aactacagca tacaagagta
3061 ccttgaggac cgccagcgct atgaagaaga actcgctgaa gtgcaagctg gtggagatgg
3121 tggaatcggc gaaactgaag ctgagatccg ccaccgtgtt ttctataaat caaagtctgg
3181 catgagaaaa cagcggcaag aggaacgccg ccagttaggc ctcgtgagcg gtaccgaaat
3241 ccgcaaacgt aagcccatag actggacccc ccccaaaaat gattggtcag aggacactag
3301 aactgttaat tatgatgaac acattagctt tgaagccccc ccttcaatct ggagtagagt
3361 agttaaattt ggcagtggct ggggtttttg ggtgagttca acagtgttca tcaccacaac
3421 acatgttata ccacctggtg ctaaagagat ctttggtgag aacattagca atattgccat
3481 ccacagagtt ggcgaattca ctcaattccg cttctccaag aaaatgaggc ctgacctctc
3541 tggcatggtc ctggaagagg gatgccctga gggcacggtg tgcaccataa tgataaaaag
3601 agactctgga gaattgttgc cgctggctgt tcgcatggga gcagtggcct caatgaagat
3661 ccaagggaag ctcatgcatg gacagtcagg gatgttgctc accggtgcta acgccaaagg
3721 catggaccta ggtaccatac ctggggattg tggagcgccc tatatccata agagagggaa
3781 tgactgggtg gtttgtgggg tgcatgcagc agccacgaaa tcaggcaata ccgtggtgtg
3841 cgccatacaa ggtggtgaag gtgaagccac gctagagggt ggcgatcaaa ataagggcca
3901 ttatgcagga cacccaatac taagatatgg tagtggccct tcattgtcaa ctaaaacaaa
3961 gttttggaaa tcaaaccccc aacctctacc ccctggtaca tatgaaccag cctacctcgg
4021 tggcaaagac cccagggttg aaggtggccc gtctctgcag caagtgttgc gagaccagct
4081 aaaaccattt gctgaacccc gtggcaggtt gcccgaagca ggattgctag aagccgcggt
4141 tgaaactgtc accaatgcaa ttgaacaggt catggacaca cctgtggcat ggagttacag
4201 cgacgcctgc atgtccttgg acaaaacaac cagttctggc taccctcatc acaaaagaaa
4261 gaatgacgac tggaacggga gttcatttgt gagagaattg ggagaccagg cagcgcatgc
4321 taatagcatg tatgagcttg gtaaatctat gaaaccagtg tatacagcag cactcaagga
4381 tgagcttgtt aagccagaca aggtgtacaa taaaattaag aaaaggctac tctggggagc
4441 ggacctcggc accgttatac gtgctgctag ggcttttggg ccattttgtg aagcaataaa
4501 gccccatgtg attaagttgc ccatcaaagt gggcatgaat gccatagagg atggaccctt
4561 aatttatgca gaacactcca aatataagta tcattttgat gctgattaca cagcatggga
4621 ctcgacgcaa agcagggaga ttatgatgga gtcctttaac atcatgtgta aactcactgc
4681 taatccctcc ctggccgcag tggtggcaca ggacctgctc tctccttctg agatggatgt
4741 cggtgattat gtgatcagtg tcaaagatgg tctaccatct ggctttccat gcacctcaca
4801 agtgaacagt atcaaccatt ggatctacac tttgtgcgcc ttatcagagg ttactggttt
4861 ggctcctgat gtaatacagt cacagtctta cttttcattt tatggtgatg atgaaatagt
4921 ttcaacagat attgaatttg actcaaacag actaacacag gtgctaaaag agtatggctt
4981 aaaacccaca agacctgata aaactgatgg tccaatcatt gtaaggcaac aggttgatgg
5041 cttggttttc cttcggcgca ccatctcgaa ggatgccatc gggtaccagg gtcggcttga
5101 ccgtaattcc attgaaagac agctctggtg gacccgaggg cccaatcatg gtgatccatt
5161 tgaaaccctg gtcccacaca cacagaggaa ggtccaatta atatccctgt taggtgaagc
5221 cgcacttcat ggtgagaaat tttatagaaa gatagccagt agggtgatcc aggaggtcaa
5281 agagggagga ttagaaattt acattcctgg gtggcaggcc atgttccgct ggatgcgatt
5341 ccatgatttg agtttgtgga caggagaccg cgatctcctg cccgattatg taaatgatga
5401 tggcgtctaa ggacgcccca acaaacatgg atggcaccag tggtgccggc cagctggtac
5461 cagaggcaaa tacagctgag cctatatcaa tggagccagt ggctggggca gcgacagctg
5521 ccgcaaccgc tggccaagtt aacatgattg acccctggat tatgaataat tatgtgcaag
5581 ccccacaagg tgagttcacc atatcgccaa acaacacacc aggtgacatt ctatttgatc
5641 tacaattagg ccctcacctt aatccctttc tatcccattt ggctcaaatg tacaatgggt
5701 gggtaggtaa catgaaagtg aaagttctat tggcaggtaa tgccttcacg gcaggaaaaa
5761 ttattattag ttgtataccc cctggttttg tctcacacaa tatatctata gctcaagcca
5821 caatgttccc ccacgttata gctgatgtca gggtcctgga gcccattgag gtcccattgg
5881 aggatgtgag gaatgtgttg ttccacaata atgataacac accaaccatg agactggtat
5941 gcatgctcta cacccccttg cgtgccagcg gaagctcatc tgggacagac ccctttgtga
6001 ttgctgggcg tgtgttgacc tgccctagtc ctgattttag tttcttattc ttggtgcccc
6061 ctaatgtaga acaaaagact aaacctttta gtgttccaga cctcccactc aatgttctat
6121 caaattcaag ggtgccatca ctgataaaat tcatgatggt gtcacaggac cacggacaga
6181 tggtacaatt tcagaatggc agggtcacac tggatggaca gctccagggc accacaccaa
6241 catcggccag ccagctctgc aagatgcggg ggacggttta ccatgcctcc ggtggtcaag
6301 ggctcaattt aactgagatt gatggcaccc cctatcatgc atttgaaagc ccagctccca
6361 ttggtttccc tgacataggg gacagcgatt ggcatatcaa cgcttcaccc gccaccgctt
6421 tcggcactgg cgaaagcgtt aaaagattag atgtggaaca gggctcttca tttgccccac
6481 atttgggtac tgtacactat actaatgcca gctatgaagc taacactgac ctgatctgct
6541 cattggagtg gctatccccg cctagcggag gcactccaaa caaagtcaac ccttgggcca
6601 tcccacggta tggttcaact ttaactgaag ctgctcaact ggccccacca atttaccccc
6661 ctggctttgg agaagctata gttttcttta tgtctgattt tcctatagca aatggtcaag
6721 atgggttaag agtgccctgc actatacccc aagaatttgt aacccatttt gttaatgaac
6781 aagcaccaac ccgtggggaa gctgcccttc ttcattatgt tgaccccgac acacaccgca
6841 atctgggtga gttcaagtta taccctgaag gatttatgac ttgtgtacca aattctagtg
6901 gtagtggtcc ccaaacgctg cctattaatg gagtcttcac ttttgtctct tgggtttccc
6961 gtttctatca attaaagcct gtgggaacga ccggaccggt tcgtaggcta ggaatcagga
7021 gatcataatg gcccaggcaa tatttggagc aatagctgcg acggctgctg gtagcgctgt
7081 gggtgcaggc attcaggctg gtactgaggc cgcactccaa catcagcggt tccagcagga
7141 tttaacgttg cagagcaaca ctttcaaaca tgacaaagaa atgctggggc tacaggttgg
7201 tgcttccact gttcttttgc aaaacagcct caacacccgc tacaacatgc tcacaaatgc
7261 tggcctctcg tcctcagatg cagcacgcgt ggtggttggc gcgccagcca cacgtgttgt
7321 tgactggaac ggcaccaggg tgtcagcacc acaatctaca gctaccacgt tgaggtctgg
7381 tgggtttatg acaatcccaa ctctgtacaa gggcaaacaa cagcagaaag ccccaactga
7441 aattggctta tctaacccaa attatggttc atctgtgtct tctagggttg ctgattgggt
7501 ttcctctcaa agctcttctc gctcttcctt gggcccgtat caccccagtg ctttgcagac
7561 aacgtgggtg accccacccg gttctagttc tacttctact atttcttctg tgtctactgc
7621 acctagatat ttcaatactg ataggttgcc tctattcgca aatatgagga aataattttt
7681 gtaatatgat atgtgggcat catattcaat tggatttgat taattattaa tttggtttaa
7741 ttattgattt ggtttaattt ggattttgat gtt
//