Typing tool
|
Complete norovirus genomes
MT372462 | GI.7 | ||
---|---|---|---|
GI.P7 |
ORF1: 95..5401 ORF2: 5385..7001 ORF3: 7001..7648LOCUS MT372462 7777 bp RNA linear VRL 28-APR-2020 DEFINITION Norovirus GI isolate Hu/US/2014/GI.7[P7]/Callao0462, complete genome. ACCESSION MT372462 VERSION MT372462.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7777) AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M., Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7777 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="Callao0462" /isolate="Hu/US/2014/GI.7[P7]/Callao0462" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122928" /country="USA" /collection_date="18-Jun-2014" /note="genotype: GI.7[P7]" gene 95..5401 /gene="ORF1" CDS 95..5401 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QJD23055.1" /translation="MAKLKERISSQRGEGTTKIKNTEMALDLIRRSQTPSPTRSDPPP KAQRDRPPRTVSEVKQVLGWDGPASKDYGARAWCDLTAEEKKEILDNNERLFDAGGVT PSTVPSTFERCDTPERVDGCHPVKWSESTGVDLGVDSLTTVTGPVWNMCPLPPIDSRN NGPASEPRIGDMIEFYEGHIFHYAIYLGQGKTIGVHSPQAAFSIARITIHPMAAWWRV CYEPTDQQRLSYDQLKELENEPWPYASVTNNCYEFCCRVMSLDDSWLQRKLVTSGRFN HPTQEWSKETPDFHQDSKLEIVRDAILSAINGLVSQPFKNILSKIKPLNLLSLLSNCD WTFMGVVELVVLLAELFDIFWTPPDISNFIASLLPDFHLQGPEDLARDLIPLILGGIG LAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENA VIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEERARKLSVRSADPHVVTTVNNLISR ISMARSALAKAQAEMTNRARPVVIMMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLV PRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIADTAPLTLNCDRIENKGMQFV SDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEIEQTRRTHPGDTNAIKNLFK PDFSHLKMEIAPQGGFDNQGNTPFGKGTMKSTTLSRLLIQAVALTMERQDEFQMQGAV YNFDEDRVTAFTSLARANGLGLLSMAALGKKLRSVNNMEGLRNALKGYKITPCDIVWN NRTYTIKADGSNVSVTEKQAAVTLQQQATSSVTLALSRLRAARALAYASCFQSAVTTI LQMAGSAVVISRAVKRMFGTHTNQPALEGKPREHNCRVHRAEREGRGPIGHDGIIERY GLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKK VREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQ RQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVK FGSGWGFWVSSTVFITTTHVIPPDAKEVFGEKLSDIAIHRVGEFTQFRFSKKMRPDLS GMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANA KGMDLGTIPGDCGAPYVHKRGNDWIVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQ NKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQ VLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLEQTMDTPVPWSFNDACMSLDKTTSS GYPHHKRKNDDWNGNAFVRELGEQAAHANNMYELGKSVKPVYTAALKDELVKPEKVYT KIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKY KYHFDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS VKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDV EFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRN SIERQLWWTRGPNHDDPFETLIPHQQRKIQLISLLGEAALHGEKFYRKIANRVIQEVK EGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLPDYVNDDGV" mat_peptide 95..1216 /gene="ORF1" /product="p48" mat_peptide 1217..2305 /gene="ORF1" /product="NTPase" mat_peptide 2306..2905 /gene="ORF1" /product="p22" mat_peptide 2906..3325 /gene="ORF1" /product="VPg" mat_peptide 3326..3868 /gene="ORF1" /product="Pro" mat_peptide 3869..5398 /gene="ORF1" /product="RdRp" gene 5385..7001 /gene="ORF2" CDS 5385..7001 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QJD23056.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQHPSGDQLGTLTWISPLNNSS RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV FIFSSWVSRYYQLKPVGTAGPARRLGVRRI" gene 7001..7648 /gene="ORF3" CDS 7001..7648 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QJD23057.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG VRIAAPTSTATTLRSGNFMSIPVTPKKEPQKLPARSVGLSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK" ORIGIN 1 gtgaatgatg atggcgtcta acgacgctgt tgccgctgct gatgtcagca aacaaaatgc 61 taacaccaac aacgaaaaga tcggttctcg ccttatggcg aaactgaaag agcgtataag 121 ctctcaacgt ggtgaaggaa ccacgaagat caagaacact gaaatggcac tggatctgat 181 acgtaggtcc caaacaccat cgccaacgcg ctcagacccc cctcctaagg cgcaacgcga 241 tcgccctcca aggacagtat cagaagtcaa acaagttttg ggttgggatg gccctgccag 301 taaggattat ggggcccgag catggtgcga cttaacagct gaagaaaaga aggaaatcct 361 ggacaacaac gagcgcctct ttgacgctgg cggcgtgact ccctcgacag taccaagcac 421 ttttgagagg tgtgatacac ctgaacgagt cgacggctgc caccctgtca aatggagcga 481 gtctacaggg gtggatttgg gagtggattc tctgaccact gttacaggtc cagtatggaa 541 tatgtgcccc cttccaccaa ttgattcacg caacaatggc ccagcaagtg aaccacgtat 601 tggagatatg atagaatttt atgaagggca catattccat tatgccatat atcttggtca 661 agggaagacc ataggggtcc actctcctca ggcagctttt tccatagctc gtataaccat 721 acaccctatg gcagcatggt ggcgtgtctg ttatgagcca acagatcaac aacgccttag 781 ctatgaccaa ttaaaggaac ttgagaatga accgtggccc tatgcatccg taacgaacaa 841 ttgttacgag ttttgctgcc gtgtcatgtc cttggacgac tcctggttac aacgaaaact 901 ggtgacatct ggcagattta atcatcccac ccaggaatgg tccaaggaaa cacctgattt 961 ccatcaagac tcaaaattgg aaatagtgag agacgcaata ctatccgcca taaacggcct 1021 ggtctctcaa ccttttaaga acatcctctc aaaaattaaa ccactaaatt tgttgtcttt 1081 gctgtcaaac tgtgactgga cttttatggg ggttgtcgag ctagtagtgc tactggctga 1141 attgtttgac atcttctgga ccccacctga tatctctaat ttcatagcat ctctcctacc 1201 tgacttccac ctgcaagggc cagaggattt ggcaagagac ctaatcccat taatactggg 1261 gggcatcggc ctggctattg gtttcactag agacaagatc acgaaggtca tgaagagtgc 1321 cgttgatggt ctgcgctcag ccacgcagct tggacaatat ggccttgagg tgttctcgat 1381 tataaagaag tacttctttg gtggggatca aactgagaaa actctcaagg gcatagagaa 1441 tgcagtcata gacatggaag ttctgtcgag taccaatgtc acacaattgg tgcgcgacaa 1501 gaaattggct aaaacataca tgaacatcct ggacaatgaa gaggaaaggg caagaaaact 1561 ttcagtgcgc agtgctgacc cacatgttgt gacaacagtc aacaatctca tttcgcgcat 1621 atctatggcg cgatcagctc ttgccaaggc tcaagctgag atgactaatc gggcacgccc 1681 cgtggtcata atgatgtgtg ggccaccagg tataggaaaa accaaagctg ctgaacacct 1741 agccaatcgc ctggctggtg agataaggcc aggaggaaaa gtgggtttag tgcctagaga 1801 atccattgac cattgggatg gctaccatgg ggaagaagtc ctgctgtggg atgactacgg 1861 catgtccaag ataacagagg attgcaataa actacaagcc atagctgaca ctgccccact 1921 cacactcaat tgtgacagaa tagagaacaa gggtatgcaa tttgtgtcag atgcaataat 1981 aataacaaca aatgcccccg ggccagcccc cgtcgacttt gttaaccttg gtccagtatg 2041 tcgacgtgta gacttcctgg tgtattgcac cgcccccgaa attgaacaga ccaggagaac 2101 ccaccctggg gacaccaatg ccatcaagaa tctgttcaaa ccagactttt cccatttaaa 2161 aatggagata gcaccacaag gggggtttga caatcaaggt aacaccccct ttgggaaggg 2221 tactatgaaa tcaaccacac tcagtaggtt actcatccag gcagttgctt tgacaatgga 2281 gagacaagat gaatttcaga tgcagggggc agtgtataac tttgatgagg accgggtcac 2341 agctttcact agcctagccc gggccaacgg gttaggactt ttgagtatgg ctgcactcgg 2401 taagaagctg cggagtgtca acaatatgga gggactccgc aacgccctca aagggtacaa 2461 gatcactcca tgtgacattg tgtggaacaa caggacctac accattaagg cagatggatc 2521 aaatgtgagc gtcacagaaa agcaggcagc tgtcactctc cagcaacaag ctaccagctc 2581 ggttactctg gcactttcta ggttacgcgc cgcgcgagcg ttggcgtatg catcatgttt 2641 ccagagcgca gtgaccacca tcttgcaaat ggctgggtct gcagtggtga tcagcagggc 2701 agtcaaacgc atgtttggga cccataccaa ccagccagcc ctagagggca aacccagaga 2761 acataactgc agggtccacc gagctgaaag agaaggtcgt ggccctattg gtcatgatgg 2821 catcatagaa cggtacggcc tgtgtgaaac tgaccaagaa gaagaagaga agatcgagat 2881 ggaagtgcca actgcagaca aagagggcaa gaataaaggc aagaacaaga aggggcgagg 2941 taggaaaaac aactacaacg ccttttctag gcgaggccta agtgatgagg agtatgaaga 3001 atacaagaag gtcagagaag agaagggtgg taattacagc atccaagaat acctcgagga 3061 ccgccaaaga tatgaagaag agttggctga ggtccaagca ggtggagatg gcgggatcgg 3121 tgaaacagag gcagagatcc gccatcgtgt tttctacaaa tccaagagtg gcatgcgaaa 3181 acaacgccaa gaggagcgcc ggcagcttgg gttagtcaca ggcaccgaaa tcagaaagcg 3241 caagcccata gattggacac cacccaagaa tgactggtca gaagacacca gacaggtcaa 3301 ttatgatgaa cacatcagct ttgaagcccc accttctatt tggagtagag tggtcaaatt 3361 tggcagtgga tggggctttt gggtaagttc aacagtcttc atcacaacca cacacgtcat 3421 accaccagat gctaaagaag tctttgggga aaaactttca gatatagcaa tacacagagt 3481 tggagagttc acacaattta gattctctaa gaaaatgaga cctgatctca gtggtatggt 3541 ccttgaggag ggttgcccgg agggtacggt gtgcaccata atggtgaaga gagattcagg 3601 tgagctgttg cctctggctg tgcgcatggg agctgttgcg tccatgaaga tacaaggcaa 3661 gctcatgcat ggtcagtctg gtatgttgct aaccggtgca aatgcaaagg gaatggacct 3721 gggcaccatc cctggtgact gtggagctcc atatgtgcat aagaggggaa atgactggat 3781 agtgtgtgga gtgcacgcag ccgcaaccaa gtcgggcaac accgtagtgt gcgcaataca 3841 gtcaggtgaa ggtgaagcta cccttgaagg gggtggacaa aacaaagggc attatgcagg 3901 ccacccaatc ttaaggtatg gcaatgggcc ctctctctct acaaaaacca aattctggaa 3961 atcaaccccc caaccgctcc cgcctggaac ctatgaacca gcttatctag gtgggcgtga 4021 ccccagagtg gacggtggtc catcacttca acaagtccta cgtgaccaac tcaagccttt 4081 tgctgagccc cgtggtaggc tgccagaacc gagcttgctc gaagcggccg tggagactgt 4141 tacaaatgtt ttagaacaaa ccatggacac acctgtgcct tggagcttca atgacgcctg 4201 tatgtctctt gacaagacca ccagctcagg ttatccgcac cataaacgca agaatgatga 4261 ttggaatggc aatgcgtttg tgcgtgaact tggggaacag gcggctcatg ccaataacat 4321 gtatgaattg ggtaagtcag tcaagccagt ttacacagca gcacttaaag atgaattggt 4381 gaaacctgaa aaagtgtata caaaaattaa aaagagactg ctttggggtg cggaccttgg 4441 cacagtcatt cgggccgctc gagccttcgg cccattctgt gaggcgataa aaccacatgt 4501 gataaaattg ccgatcaagg ttggcatgaa tgcaatcgaa gatggccccc tcatatacgc 4561 tgaacacgca aagtataaat atcactttga tgcagattac acagcctggg actcaactca 4621 gaatagagag atcatgctgg aatctttcaa catcatgtgt aagctcacag ccaatccatc 4681 actggctgct gttgtggcac aggacctact gtctccatca gagatggatg tgggggatta 4741 tgtgatcagt gttaaggatg gcctcccctc agggttccca tgcacctcac aagtgaacag 4801 cataaaccat tggatttata ccctatgtgc cctatcagag gtcacaggcc tggcccctga 4861 tgttctgcaa tcccagtctt acttttcttt ctatggggat gatgagatag tgtcaactga 4921 tgttgaattt gacccaataa agctcaccca agtgctcaga gagtatggtt tgaagcccac 4981 ccgacctgat aaatcagaag ggcccatcat agtgaaacaa cagatagatg ggctggtctt 5041 cctcaggcgc actatatcaa aagacgctgc tggttaccag gggcgtttag atcgcaactc 5101 cattgaaagg caactgtggt ggactcgggg accaaaccat gacgacccct ttgagactct 5161 tataccccat caacagagga agattcagtt gatatccctg cttggtgaag ctgcactcca 5221 tggagagaaa ttttacagga agatagccaa tagggtgata caggaagtta aggagggagg 5281 gcttgagctc tacataccag gttggcaggc catgtttcgc tggatgcgat ttcatgactt 5341 gagcatgtgg acaggagatc gcaatctact gcctgattat gtaaatgatg atggcgtcta 5401 aggacgcccc ctcaaacatg gatggcacca gtggtgccgg tcagctggtt ccagaggtta 5461 atacagctga acctctaccc cttgaaccgg tggtgggcgc cgcaactgcg gcggccactg 5521 ctgggcaggt taatttaata gacccctgga tcatgaataa ttttgtccaa gcccctgaag 5581 gcgagtttac tatctcaccc aacaataccc ccggagatat tttatttgat ttgcgtctgg 5641 ggccacacct taaccccttc ctcctacatt tgtcccagat gtataatggt tgggttggga 5701 acatgagagt tagggtcatg cttgcaggga acgcgttctc tgctggtaag atcataattt 5761 gttgtgtccc acctggcttt gaatcccaga acatatcaat tggacaggcc actatgttcc 5821 cccatgtcat agctgatgta agagtcctgg agcccataga gatcccactt gatgatgtgc 5881 gcaacgtcct gtaccacaca aatgagaacc gcccaaccat gcgattgctc tgcatgttat 5941 acacacctct ccgtgccgga ggggcttcat caggcacaga tcctttcgtc attgctggcc 6001 gtgtgttgac ttgccctgcc cctgacttta attttctgtt tcttgtgccc cccagtgtag 6061 aacagaaaac caggcaactg actataccca atataccctt gaataatttg gctaactcca 6121 gagtgcctgc aatgataaat aagatgacag tctctgctga tcagaatcag gtggtccagt 6181 ttcaaaatgg ccgttgcaca cttgaaggac aactcttagg tacaactcct gtttcagcca 6241 accaagttgc ccgcatacgt ggtaaagtct tctctaccaa ctccggaacg ggacttaatt 6301 taactgaaac agatggaacc ccctaccatg catttgagag cccggcccct ctcggttttc 6361 ctgacatagg tgattgtgat tggcatgtgt atgcttttaa ggtgaatcaa aatacagggg 6421 atcccatgta cagattggat ataacacaag gaaactcatt tgcgccgcat cttggctcca 6481 ttgagttcac ttctgatcag cacccatcag gagatcaatt aggcacactt acttggatct 6541 cccctctcaa caattcctcc agggttgacc cctggaaaat cccatcatat ggttcaacat 6601 tgactgagtc cactaacctg gcaccgccca tctttccacc aggctttggt gaggccatag 6661 tctacttcat gtcagatttc cctattgtgt caggtaacac tgcccaaatc ccctgcaccc 6721 tgccccaaga gttcatctca tcctttgtgg aacaacaggc acccatccga ggtgaggctg 6781 ctctactgca ttatgtggac ccagacaccc atcgcaattt gggagaattc aaactgtacc 6841 ctgatgggtt catcacttgt gtgccaaaca cgggtggcgg tccccagaac ctcccttcaa 6901 atggtgtttt tatcttttct tcttgggtct ctagatatta ccaattgaag cctgtgggaa 6961 cagccggtcc ggctaggcgg cttggtgtga gaaggatata atggctcaag ccattatagg 7021 agctattgcc gccaccgctg ctggcagcgc agtgggggca ggaatccagg ctggaactga 7081 ggcagccttg caataccaaa ggttccaaca agacctcacc ctgcaggaga attcttttaa 7141 acatgatgaa aggatgttgg gtttacaaat tgaggggtct aatgctttgc tacaaaagaa 7201 tctttctact cgctataatc ttttagttgg tgcaggtctt tcctcagctg atgccgcaag 7261 gtctattgct ggagccccag tgacaaaaat cgtggactgg aatggggtga gaattgctgc 7321 ccctacatcc actgccacca ctctccgttc tggcaacttc atgagcatac cagttacacc 7381 taaaaaggag ccccaaaaat tgccagcacg ttctgtgggc ctctccaatc ctaattatga 7441 ttcatccact atgatttcca ggacaactca atgggtggaa tcgcaaaatt caatcaggaa 7501 tttgtcacct ttccatagct ctgctttgag gactacttgg gtaacccctc ctggttctac 7561 ttctacttca accttttcta ctgtttcttc ggcgccacga tattttaaca ccgagcgcct 7621 tcctttgttc gcaaacaata ggaaatagtt tttgtaatat aatgtgggca tcatattcat 7681 atttggttta ttaattggat taatttgatt aattggacat ttcatatttg gtttattgat 7741 tggattaatt tgattaattg gatttgaatt ggatgtt //