Typing tool
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Typing tool
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Complete norovirus genomes
| MT372462 | GI.7 | |
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| GI.P7 |
ORF1: 95..5401
ORF2: 5385..7001
ORF3: 7001..7648
LOCUS MT372462 7777 bp RNA linear VRL 28-APR-2020
DEFINITION Norovirus GI isolate Hu/US/2014/GI.7[P7]/Callao0462, complete
genome.
ACCESSION MT372462
VERSION MT372462.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7777)
AUTHORS Randazzo,W., Olortegui,M.P., Kosek,M.N., Montmayeur,A.M.,
Tatusov,R.L., Chhabra,P., Browne,H., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2020) Division of Viral Diseases, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 11.1.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7777
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Callao0462"
/isolate="Hu/US/2014/GI.7[P7]/Callao0462"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/geo_loc_name="USA"
/collection_date="18-Jun-2014"
/note="genotype: GI.7[P7]"
gene 95..5401
/gene="ORF1"
CDS 95..5401
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QJD23055.1"
/translation="MAKLKERISSQRGEGTTKIKNTEMALDLIRRSQTPSPTRSDPPP
KAQRDRPPRTVSEVKQVLGWDGPASKDYGARAWCDLTAEEKKEILDNNERLFDAGGVT
PSTVPSTFERCDTPERVDGCHPVKWSESTGVDLGVDSLTTVTGPVWNMCPLPPIDSRN
NGPASEPRIGDMIEFYEGHIFHYAIYLGQGKTIGVHSPQAAFSIARITIHPMAAWWRV
CYEPTDQQRLSYDQLKELENEPWPYASVTNNCYEFCCRVMSLDDSWLQRKLVTSGRFN
HPTQEWSKETPDFHQDSKLEIVRDAILSAINGLVSQPFKNILSKIKPLNLLSLLSNCD
WTFMGVVELVVLLAELFDIFWTPPDISNFIASLLPDFHLQGPEDLARDLIPLILGGIG
LAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEVFSIIKKYFFGGDQTEKTLKGIENA
VIDMEVLSSTNVTQLVRDKKLAKTYMNILDNEEERARKLSVRSADPHVVTTVNNLISR
ISMARSALAKAQAEMTNRARPVVIMMCGPPGIGKTKAAEHLANRLAGEIRPGGKVGLV
PRESIDHWDGYHGEEVLLWDDYGMSKITEDCNKLQAIADTAPLTLNCDRIENKGMQFV
SDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEIEQTRRTHPGDTNAIKNLFK
PDFSHLKMEIAPQGGFDNQGNTPFGKGTMKSTTLSRLLIQAVALTMERQDEFQMQGAV
YNFDEDRVTAFTSLARANGLGLLSMAALGKKLRSVNNMEGLRNALKGYKITPCDIVWN
NRTYTIKADGSNVSVTEKQAAVTLQQQATSSVTLALSRLRAARALAYASCFQSAVTTI
LQMAGSAVVISRAVKRMFGTHTNQPALEGKPREHNCRVHRAEREGRGPIGHDGIIERY
GLCETDQEEEEKIEMEVPTADKEGKNKGKNKKGRGRKNNYNAFSRRGLSDEEYEEYKK
VREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGMRKQ
RQEERRQLGLVTGTEIRKRKPIDWTPPKNDWSEDTRQVNYDEHISFEAPPSIWSRVVK
FGSGWGFWVSSTVFITTTHVIPPDAKEVFGEKLSDIAIHRVGEFTQFRFSKKMRPDLS
GMVLEEGCPEGTVCTIMVKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTGANA
KGMDLGTIPGDCGAPYVHKRGNDWIVCGVHAAATKSGNTVVCAIQSGEGEATLEGGGQ
NKGHYAGHPILRYGNGPSLSTKTKFWKSTPQPLPPGTYEPAYLGGRDPRVDGGPSLQQ
VLRDQLKPFAEPRGRLPEPSLLEAAVETVTNVLEQTMDTPVPWSFNDACMSLDKTTSS
GYPHHKRKNDDWNGNAFVRELGEQAAHANNMYELGKSVKPVYTAALKDELVKPEKVYT
KIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEHAKY
KYHFDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
VKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQSQSYFSFYGDDEIVSTDV
EFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQQIDGLVFLRRTISKDAAGYQGRLDRN
SIERQLWWTRGPNHDDPFETLIPHQQRKIQLISLLGEAALHGEKFYRKIANRVIQEVK
EGGLELYIPGWQAMFRWMRFHDLSMWTGDRNLLPDYVNDDGV"
mat_peptide 95..1216
/gene="ORF1"
/product="p48"
mat_peptide 1217..2305
/gene="ORF1"
/product="NTPase"
mat_peptide 2306..2905
/gene="ORF1"
/product="p22"
mat_peptide 2906..3325
/gene="ORF1"
/product="VPg"
mat_peptide 3326..3868
/gene="ORF1"
/product="Pro"
mat_peptide 3869..5398
/gene="ORF1"
/product="RdRp"
gene 5385..7001
/gene="ORF2"
CDS 5385..7001
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QJD23056.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG
WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ
LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH
VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQHPSGDQLGTLTWISPLNNSS
RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF
ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FIFSSWVSRYYQLKPVGTAGPARRLGVRRI"
gene 7001..7648
/gene="ORF3"
CDS 7001..7648
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QJD23057.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG
VRIAAPTSTATTLRSGNFMSIPVTPKKEPQKLPARSVGLSNPNYDSSTMISRTTQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctgt tgccgctgct gatgtcagca aacaaaatgc
61 taacaccaac aacgaaaaga tcggttctcg ccttatggcg aaactgaaag agcgtataag
121 ctctcaacgt ggtgaaggaa ccacgaagat caagaacact gaaatggcac tggatctgat
181 acgtaggtcc caaacaccat cgccaacgcg ctcagacccc cctcctaagg cgcaacgcga
241 tcgccctcca aggacagtat cagaagtcaa acaagttttg ggttgggatg gccctgccag
301 taaggattat ggggcccgag catggtgcga cttaacagct gaagaaaaga aggaaatcct
361 ggacaacaac gagcgcctct ttgacgctgg cggcgtgact ccctcgacag taccaagcac
421 ttttgagagg tgtgatacac ctgaacgagt cgacggctgc caccctgtca aatggagcga
481 gtctacaggg gtggatttgg gagtggattc tctgaccact gttacaggtc cagtatggaa
541 tatgtgcccc cttccaccaa ttgattcacg caacaatggc ccagcaagtg aaccacgtat
601 tggagatatg atagaatttt atgaagggca catattccat tatgccatat atcttggtca
661 agggaagacc ataggggtcc actctcctca ggcagctttt tccatagctc gtataaccat
721 acaccctatg gcagcatggt ggcgtgtctg ttatgagcca acagatcaac aacgccttag
781 ctatgaccaa ttaaaggaac ttgagaatga accgtggccc tatgcatccg taacgaacaa
841 ttgttacgag ttttgctgcc gtgtcatgtc cttggacgac tcctggttac aacgaaaact
901 ggtgacatct ggcagattta atcatcccac ccaggaatgg tccaaggaaa cacctgattt
961 ccatcaagac tcaaaattgg aaatagtgag agacgcaata ctatccgcca taaacggcct
1021 ggtctctcaa ccttttaaga acatcctctc aaaaattaaa ccactaaatt tgttgtcttt
1081 gctgtcaaac tgtgactgga cttttatggg ggttgtcgag ctagtagtgc tactggctga
1141 attgtttgac atcttctgga ccccacctga tatctctaat ttcatagcat ctctcctacc
1201 tgacttccac ctgcaagggc cagaggattt ggcaagagac ctaatcccat taatactggg
1261 gggcatcggc ctggctattg gtttcactag agacaagatc acgaaggtca tgaagagtgc
1321 cgttgatggt ctgcgctcag ccacgcagct tggacaatat ggccttgagg tgttctcgat
1381 tataaagaag tacttctttg gtggggatca aactgagaaa actctcaagg gcatagagaa
1441 tgcagtcata gacatggaag ttctgtcgag taccaatgtc acacaattgg tgcgcgacaa
1501 gaaattggct aaaacataca tgaacatcct ggacaatgaa gaggaaaggg caagaaaact
1561 ttcagtgcgc agtgctgacc cacatgttgt gacaacagtc aacaatctca tttcgcgcat
1621 atctatggcg cgatcagctc ttgccaaggc tcaagctgag atgactaatc gggcacgccc
1681 cgtggtcata atgatgtgtg ggccaccagg tataggaaaa accaaagctg ctgaacacct
1741 agccaatcgc ctggctggtg agataaggcc aggaggaaaa gtgggtttag tgcctagaga
1801 atccattgac cattgggatg gctaccatgg ggaagaagtc ctgctgtggg atgactacgg
1861 catgtccaag ataacagagg attgcaataa actacaagcc atagctgaca ctgccccact
1921 cacactcaat tgtgacagaa tagagaacaa gggtatgcaa tttgtgtcag atgcaataat
1981 aataacaaca aatgcccccg ggccagcccc cgtcgacttt gttaaccttg gtccagtatg
2041 tcgacgtgta gacttcctgg tgtattgcac cgcccccgaa attgaacaga ccaggagaac
2101 ccaccctggg gacaccaatg ccatcaagaa tctgttcaaa ccagactttt cccatttaaa
2161 aatggagata gcaccacaag gggggtttga caatcaaggt aacaccccct ttgggaaggg
2221 tactatgaaa tcaaccacac tcagtaggtt actcatccag gcagttgctt tgacaatgga
2281 gagacaagat gaatttcaga tgcagggggc agtgtataac tttgatgagg accgggtcac
2341 agctttcact agcctagccc gggccaacgg gttaggactt ttgagtatgg ctgcactcgg
2401 taagaagctg cggagtgtca acaatatgga gggactccgc aacgccctca aagggtacaa
2461 gatcactcca tgtgacattg tgtggaacaa caggacctac accattaagg cagatggatc
2521 aaatgtgagc gtcacagaaa agcaggcagc tgtcactctc cagcaacaag ctaccagctc
2581 ggttactctg gcactttcta ggttacgcgc cgcgcgagcg ttggcgtatg catcatgttt
2641 ccagagcgca gtgaccacca tcttgcaaat ggctgggtct gcagtggtga tcagcagggc
2701 agtcaaacgc atgtttggga cccataccaa ccagccagcc ctagagggca aacccagaga
2761 acataactgc agggtccacc gagctgaaag agaaggtcgt ggccctattg gtcatgatgg
2821 catcatagaa cggtacggcc tgtgtgaaac tgaccaagaa gaagaagaga agatcgagat
2881 ggaagtgcca actgcagaca aagagggcaa gaataaaggc aagaacaaga aggggcgagg
2941 taggaaaaac aactacaacg ccttttctag gcgaggccta agtgatgagg agtatgaaga
3001 atacaagaag gtcagagaag agaagggtgg taattacagc atccaagaat acctcgagga
3061 ccgccaaaga tatgaagaag agttggctga ggtccaagca ggtggagatg gcgggatcgg
3121 tgaaacagag gcagagatcc gccatcgtgt tttctacaaa tccaagagtg gcatgcgaaa
3181 acaacgccaa gaggagcgcc ggcagcttgg gttagtcaca ggcaccgaaa tcagaaagcg
3241 caagcccata gattggacac cacccaagaa tgactggtca gaagacacca gacaggtcaa
3301 ttatgatgaa cacatcagct ttgaagcccc accttctatt tggagtagag tggtcaaatt
3361 tggcagtgga tggggctttt gggtaagttc aacagtcttc atcacaacca cacacgtcat
3421 accaccagat gctaaagaag tctttgggga aaaactttca gatatagcaa tacacagagt
3481 tggagagttc acacaattta gattctctaa gaaaatgaga cctgatctca gtggtatggt
3541 ccttgaggag ggttgcccgg agggtacggt gtgcaccata atggtgaaga gagattcagg
3601 tgagctgttg cctctggctg tgcgcatggg agctgttgcg tccatgaaga tacaaggcaa
3661 gctcatgcat ggtcagtctg gtatgttgct aaccggtgca aatgcaaagg gaatggacct
3721 gggcaccatc cctggtgact gtggagctcc atatgtgcat aagaggggaa atgactggat
3781 agtgtgtgga gtgcacgcag ccgcaaccaa gtcgggcaac accgtagtgt gcgcaataca
3841 gtcaggtgaa ggtgaagcta cccttgaagg gggtggacaa aacaaagggc attatgcagg
3901 ccacccaatc ttaaggtatg gcaatgggcc ctctctctct acaaaaacca aattctggaa
3961 atcaaccccc caaccgctcc cgcctggaac ctatgaacca gcttatctag gtgggcgtga
4021 ccccagagtg gacggtggtc catcacttca acaagtccta cgtgaccaac tcaagccttt
4081 tgctgagccc cgtggtaggc tgccagaacc gagcttgctc gaagcggccg tggagactgt
4141 tacaaatgtt ttagaacaaa ccatggacac acctgtgcct tggagcttca atgacgcctg
4201 tatgtctctt gacaagacca ccagctcagg ttatccgcac cataaacgca agaatgatga
4261 ttggaatggc aatgcgtttg tgcgtgaact tggggaacag gcggctcatg ccaataacat
4321 gtatgaattg ggtaagtcag tcaagccagt ttacacagca gcacttaaag atgaattggt
4381 gaaacctgaa aaagtgtata caaaaattaa aaagagactg ctttggggtg cggaccttgg
4441 cacagtcatt cgggccgctc gagccttcgg cccattctgt gaggcgataa aaccacatgt
4501 gataaaattg ccgatcaagg ttggcatgaa tgcaatcgaa gatggccccc tcatatacgc
4561 tgaacacgca aagtataaat atcactttga tgcagattac acagcctggg actcaactca
4621 gaatagagag atcatgctgg aatctttcaa catcatgtgt aagctcacag ccaatccatc
4681 actggctgct gttgtggcac aggacctact gtctccatca gagatggatg tgggggatta
4741 tgtgatcagt gttaaggatg gcctcccctc agggttccca tgcacctcac aagtgaacag
4801 cataaaccat tggatttata ccctatgtgc cctatcagag gtcacaggcc tggcccctga
4861 tgttctgcaa tcccagtctt acttttcttt ctatggggat gatgagatag tgtcaactga
4921 tgttgaattt gacccaataa agctcaccca agtgctcaga gagtatggtt tgaagcccac
4981 ccgacctgat aaatcagaag ggcccatcat agtgaaacaa cagatagatg ggctggtctt
5041 cctcaggcgc actatatcaa aagacgctgc tggttaccag gggcgtttag atcgcaactc
5101 cattgaaagg caactgtggt ggactcgggg accaaaccat gacgacccct ttgagactct
5161 tataccccat caacagagga agattcagtt gatatccctg cttggtgaag ctgcactcca
5221 tggagagaaa ttttacagga agatagccaa tagggtgata caggaagtta aggagggagg
5281 gcttgagctc tacataccag gttggcaggc catgtttcgc tggatgcgat ttcatgactt
5341 gagcatgtgg acaggagatc gcaatctact gcctgattat gtaaatgatg atggcgtcta
5401 aggacgcccc ctcaaacatg gatggcacca gtggtgccgg tcagctggtt ccagaggtta
5461 atacagctga acctctaccc cttgaaccgg tggtgggcgc cgcaactgcg gcggccactg
5521 ctgggcaggt taatttaata gacccctgga tcatgaataa ttttgtccaa gcccctgaag
5581 gcgagtttac tatctcaccc aacaataccc ccggagatat tttatttgat ttgcgtctgg
5641 ggccacacct taaccccttc ctcctacatt tgtcccagat gtataatggt tgggttggga
5701 acatgagagt tagggtcatg cttgcaggga acgcgttctc tgctggtaag atcataattt
5761 gttgtgtccc acctggcttt gaatcccaga acatatcaat tggacaggcc actatgttcc
5821 cccatgtcat agctgatgta agagtcctgg agcccataga gatcccactt gatgatgtgc
5881 gcaacgtcct gtaccacaca aatgagaacc gcccaaccat gcgattgctc tgcatgttat
5941 acacacctct ccgtgccgga ggggcttcat caggcacaga tcctttcgtc attgctggcc
6001 gtgtgttgac ttgccctgcc cctgacttta attttctgtt tcttgtgccc cccagtgtag
6061 aacagaaaac caggcaactg actataccca atataccctt gaataatttg gctaactcca
6121 gagtgcctgc aatgataaat aagatgacag tctctgctga tcagaatcag gtggtccagt
6181 ttcaaaatgg ccgttgcaca cttgaaggac aactcttagg tacaactcct gtttcagcca
6241 accaagttgc ccgcatacgt ggtaaagtct tctctaccaa ctccggaacg ggacttaatt
6301 taactgaaac agatggaacc ccctaccatg catttgagag cccggcccct ctcggttttc
6361 ctgacatagg tgattgtgat tggcatgtgt atgcttttaa ggtgaatcaa aatacagggg
6421 atcccatgta cagattggat ataacacaag gaaactcatt tgcgccgcat cttggctcca
6481 ttgagttcac ttctgatcag cacccatcag gagatcaatt aggcacactt acttggatct
6541 cccctctcaa caattcctcc agggttgacc cctggaaaat cccatcatat ggttcaacat
6601 tgactgagtc cactaacctg gcaccgccca tctttccacc aggctttggt gaggccatag
6661 tctacttcat gtcagatttc cctattgtgt caggtaacac tgcccaaatc ccctgcaccc
6721 tgccccaaga gttcatctca tcctttgtgg aacaacaggc acccatccga ggtgaggctg
6781 ctctactgca ttatgtggac ccagacaccc atcgcaattt gggagaattc aaactgtacc
6841 ctgatgggtt catcacttgt gtgccaaaca cgggtggcgg tccccagaac ctcccttcaa
6901 atggtgtttt tatcttttct tcttgggtct ctagatatta ccaattgaag cctgtgggaa
6961 cagccggtcc ggctaggcgg cttggtgtga gaaggatata atggctcaag ccattatagg
7021 agctattgcc gccaccgctg ctggcagcgc agtgggggca ggaatccagg ctggaactga
7081 ggcagccttg caataccaaa ggttccaaca agacctcacc ctgcaggaga attcttttaa
7141 acatgatgaa aggatgttgg gtttacaaat tgaggggtct aatgctttgc tacaaaagaa
7201 tctttctact cgctataatc ttttagttgg tgcaggtctt tcctcagctg atgccgcaag
7261 gtctattgct ggagccccag tgacaaaaat cgtggactgg aatggggtga gaattgctgc
7321 ccctacatcc actgccacca ctctccgttc tggcaacttc atgagcatac cagttacacc
7381 taaaaaggag ccccaaaaat tgccagcacg ttctgtgggc ctctccaatc ctaattatga
7441 ttcatccact atgatttcca ggacaactca atgggtggaa tcgcaaaatt caatcaggaa
7501 tttgtcacct ttccatagct ctgctttgag gactacttgg gtaacccctc ctggttctac
7561 ttctacttca accttttcta ctgtttcttc ggcgccacga tattttaaca ccgagcgcct
7621 tcctttgttc gcaaacaata ggaaatagtt tttgtaatat aatgtgggca tcatattcat
7681 atttggttta ttaattggat taatttgatt aattggacat ttcatatttg gtttattgat
7741 tggattaatt tgattaattg gatttgaatt ggatgtt
//